Wall clock time and date at job start Sat Apr 11 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34576 * 125.75011 * 2 1 4 4 N 1.30869 * 107.62809 * 180.02562 * 3 2 1 5 5 C 1.34545 * 107.26453 * 359.97438 * 4 3 2 6 6 C 1.47873 * 126.04598 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00365 * 180.02562 * 6 5 4 8 8 N 1.34783 * 120.00065 * 0.02948 * 6 5 4 9 9 C 1.46501 * 120.00048 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47114 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.40510 * 65.09610 * 10 9 8 12 12 C 1.50802 * 109.43783 * 184.99805 * 10 9 8 13 13 C 1.38840 * 117.80837 * 288.58715 * 12 10 9 14 14 C 1.37960 * 120.50631 * 179.34827 * 13 12 10 15 15 C 1.38257 * 119.71790 * 359.97438 * 14 13 12 16 16 C 1.37914 * 119.83063 * 0.21858 * 15 14 13 17 17 C 1.37673 * 122.34898 * 108.36902 * 12 10 9 18 18 C 1.50601 * 122.85476 * 1.61043 * 17 12 10 19 19 C 1.52786 * 110.86349 * 339.77276 * 18 17 12 20 20 N 1.46687 * 109.43651 * 305.20303 * 10 9 8 21 21 C 1.36933 * 121.33727 * 104.41453 * 20 10 9 22 22 H 1.07996 * 120.00280 * 333.17542 * 21 20 10 23 23 C 1.38813 * 119.99771 * 153.17961 * 21 20 10 24 24 N 1.31621 * 120.00274 * 341.49530 * 23 21 20 25 25 Si 1.86801 * 120.00053 * 161.50065 * 23 21 20 26 26 H 1.48499 * 109.47102 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47060 * 119.99892 * 25 23 21 28 28 H 1.48497 * 109.47011 * 239.99837 * 25 23 21 29 29 N 1.28854 * 125.74400 * 180.30582 * 2 1 3 30 30 H 1.09002 * 109.47063 * 90.00427 * 1 2 3 31 31 H 1.09001 * 109.47360 * 210.00477 * 1 2 3 32 32 H 1.08999 * 109.47424 * 330.00629 * 1 2 3 33 33 H 1.08001 * 126.18599 * 0.02562 * 3 2 1 34 34 H 0.96993 * 119.99820 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.47286 * 59.99357 * 9 8 6 36 36 H 1.08998 * 109.46673 * 299.99421 * 9 8 6 37 37 H 1.08004 * 119.74268 * 359.35208 * 13 12 10 38 38 H 1.07998 * 120.14109 * 180.02562 * 14 13 12 39 39 H 1.08001 * 120.08653 * 180.48470 * 15 14 13 40 40 H 1.07999 * 119.71053 * 180.02562 * 16 15 14 41 41 H 1.09001 * 109.19730 * 100.13010 * 18 17 12 42 42 H 1.08997 * 109.19966 * 219.41913 * 18 17 12 43 43 H 1.08998 * 109.77404 * 287.85596 * 19 18 17 44 44 H 1.08994 * 109.81816 * 167.08467 * 19 18 17 45 45 H 0.96996 * 120.00311 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6851 -0.0006 5 6 3.4749 -0.6602 -0.0003 6 6 4.6574 -1.5481 -0.0002 7 8 4.5114 -2.7548 -0.0005 8 7 5.8972 -1.0194 0.0002 9 6 7.0687 -1.8991 -0.0003 10 6 8.3426 -1.0518 -0.0003 11 1 8.4046 -0.4911 0.9324 12 6 9.5450 -1.9535 -0.1247 13 6 9.8823 -2.7380 0.9701 14 6 10.9636 -3.5929 0.9125 15 6 11.7163 -3.6689 -0.2447 16 6 11.3847 -2.8872 -1.3314 17 6 10.2994 -2.0210 -1.2743 18 6 10.0133 -1.1792 -2.4898 19 6 8.5742 -0.6663 -2.4701 20 7 8.3073 -0.1172 -1.1303 21 6 8.0373 1.2126 -0.9464 22 1 7.4422 1.5313 -0.1034 23 6 8.5284 2.1510 -1.8437 24 7 9.5283 1.8392 -2.6408 25 14 7.7703 3.8566 -1.9197 26 1 6.6691 3.9535 -0.9283 27 1 8.8072 4.8734 -1.6095 28 1 7.2318 4.0986 -3.2823 29 7 2.2177 -1.0458 -0.0056 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.9164 2.1190 0.0004 34 1 6.0137 -0.0565 0.0001 35 1 7.0507 -2.5276 -0.8906 36 1 7.0506 -2.5286 0.8894 37 1 9.2936 -2.6786 1.8736 38 1 11.2204 -4.2008 1.7674 39 1 12.5593 -4.3418 -0.2990 40 1 11.9738 -2.9484 -2.2345 41 1 10.6964 -0.3299 -2.5065 42 1 10.1675 -1.7798 -3.3862 43 1 7.8873 -1.4872 -2.6756 44 1 8.4500 0.1149 -3.2200 45 1 9.8717 2.4950 -3.2675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948913419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:50 Heat of formation + Delta-G solvation = 113.662627 kcal Electronic energy + Delta-G solvation = -29766.250389 eV Core-core repulsion = 25786.559577 eV Total energy + Delta-G solvation = -3979.690812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.36877 -39.55602 -38.73630 -36.23362 -34.61520 -34.07747 -32.26161 -31.93356 -31.69105 -29.82771 -28.82023 -28.04024 -26.73730 -24.56047 -23.36952 -22.57714 -22.19365 -21.81988 -21.11767 -20.07898 -18.67597 -17.96611 -16.79847 -16.76089 -16.20272 -15.98141 -15.54224 -15.33951 -14.75235 -14.56833 -14.45414 -14.12444 -13.85084 -13.67142 -13.42224 -13.31919 -13.19094 -12.59529 -12.52403 -12.31944 -12.15290 -11.90681 -11.65364 -11.19892 -11.05994 -11.03914 -10.78752 -10.65905 -10.39336 -10.36488 -10.35993 -10.04271 -9.87727 -9.77313 -9.51834 -9.47827 -8.54530 -8.47374 -8.20689 -7.87313 -6.77652 -5.85697 -3.28932 1.49608 1.91371 1.98825 2.17489 2.23458 3.35898 3.43826 3.44739 3.48090 3.70795 4.21649 4.30474 4.36483 4.44049 4.71267 4.81232 4.98058 5.11548 5.29462 5.30558 5.41923 5.47208 5.50197 5.62682 5.85220 5.94340 6.01836 6.02757 6.12959 6.26495 6.35919 6.42069 6.47798 6.48907 6.59732 6.64479 6.76090 6.81768 6.94421 7.00709 7.06944 7.39500 7.42731 7.59738 7.66418 7.76530 7.89859 8.22486 8.34385 8.63924 9.11576 9.73482 10.31645 11.21740 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009781 B = 0.004142 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.105172 B = 6757.819374 C = 9074.203397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.311 5.311 3 C 0.187 3.813 4 N -0.473 5.473 5 C 0.152 3.848 6 C 0.607 3.393 7 O -0.537 6.537 8 N -0.681 5.681 9 C 0.114 3.886 10 C 0.193 3.807 11 H 0.079 0.921 12 C -0.079 4.079 13 C -0.118 4.118 14 C -0.139 4.139 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.039 4.039 18 C -0.096 4.096 19 C 0.164 3.836 20 N -0.579 5.579 21 C -0.253 4.253 22 H 0.071 0.929 23 C 0.010 3.990 24 N -0.893 5.893 25 Si 0.901 3.099 26 H -0.273 1.273 27 H -0.292 1.292 28 H -0.290 1.290 29 N -0.260 5.260 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.225 0.775 34 H 0.421 0.579 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.048 0.952 43 H 0.007 0.993 44 H 0.095 0.905 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.810 -3.172 4.808 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.107 5.107 3 C -0.109 4.109 4 N -0.197 5.197 5 C -0.129 4.129 6 C 0.388 3.612 7 O -0.412 6.412 8 N -0.334 5.334 9 C -0.012 4.012 10 C 0.084 3.916 11 H 0.097 0.903 12 C -0.081 4.081 13 C -0.137 4.137 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.039 4.039 18 C -0.134 4.134 19 C 0.039 3.961 20 N -0.300 5.300 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.189 4.189 24 N -0.537 5.537 25 Si 0.730 3.270 26 H -0.198 1.198 27 H -0.220 1.220 28 H -0.217 1.217 29 N -0.099 5.099 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.241 0.759 34 H 0.260 0.740 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.025 0.975 44 H 0.113 0.887 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.714 -4.346 4.670 12.469 hybrid contribution -0.391 1.656 -0.149 1.708 sum -11.105 -2.690 4.522 12.288 Atomic orbital electron populations 1.22184 0.72631 1.05697 1.04798 1.47395 1.09124 1.04010 1.50161 1.26531 0.85946 0.95897 1.02537 1.71399 1.20053 1.09441 1.18849 1.23895 0.92153 0.89531 1.07276 1.16310 0.81325 0.85678 0.77868 1.90780 1.85866 1.13576 1.51025 1.45667 1.03704 1.12582 1.71436 1.22007 0.85071 0.92860 1.01264 1.19604 0.88277 0.89801 0.93894 0.90324 1.20068 0.97709 0.97078 0.93215 1.21105 0.97585 0.96773 0.98224 1.20872 0.96784 1.00235 0.97870 1.20909 0.99812 1.00009 0.93901 1.21191 0.97799 0.97737 0.98518 1.19876 0.93455 0.94658 0.95928 1.20993 1.02491 0.98041 0.91906 1.20798 0.90536 0.95999 0.88763 1.44149 1.81696 1.04028 1.00077 1.19107 1.25973 0.81402 1.11709 0.91178 1.24974 0.96009 0.97654 1.00301 1.69981 1.23813 1.34496 1.25365 0.86242 0.78850 0.84209 0.77650 1.19787 1.21954 1.21707 1.74322 1.02994 1.13138 1.19411 0.89336 0.88380 0.88149 0.75886 0.73970 0.91773 0.92024 0.86706 0.86979 0.87101 0.86923 0.88038 0.93387 0.97548 0.88700 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.38 59.85 0.68 1.13 16 2 N -0.31 -3.53 3.72 -69.39 -0.26 -3.79 16 3 C 0.19 2.15 12.62 -90.49 -1.14 1.01 16 4 N -0.47 -7.83 11.09 -12.37 -0.14 -7.96 16 5 C 0.15 2.76 7.96 -156.36 -1.24 1.52 16 6 C 0.61 12.22 7.83 -12.31 -0.10 12.12 16 7 O -0.54 -11.99 17.09 5.32 0.09 -11.89 16 8 N -0.68 -13.31 5.38 -61.24 -0.33 -13.64 16 9 C 0.11 2.18 5.01 -4.04 -0.02 2.16 16 10 C 0.19 3.89 2.50 -68.93 -0.17 3.72 16 11 H 0.08 1.59 7.98 -51.93 -0.41 1.17 16 12 C -0.08 -1.52 5.16 -104.56 -0.54 -2.06 16 13 C -0.12 -1.99 9.36 -39.46 -0.37 -2.36 16 14 C -0.14 -2.14 10.05 -39.68 -0.40 -2.54 16 15 C -0.13 -1.98 10.04 -39.69 -0.40 -2.38 16 16 C -0.13 -2.32 9.59 -39.43 -0.38 -2.70 16 17 C -0.04 -0.77 5.76 -104.60 -0.60 -1.37 16 18 C -0.10 -2.03 5.77 -28.04 -0.16 -2.19 16 19 C 0.16 3.76 5.46 -3.75 -0.02 3.74 16 20 N -0.58 -13.34 2.30 -166.33 -0.38 -13.72 16 21 C -0.25 -6.32 8.72 -15.06 -0.13 -6.46 16 22 H 0.07 1.72 7.31 -52.49 -0.38 1.34 16 23 C 0.01 0.26 4.93 -17.43 -0.09 0.18 16 24 N -0.89 -23.83 10.14 55.49 0.56 -23.27 16 25 Si 0.90 20.67 29.59 -169.99 -5.03 15.64 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 29 N -0.26 -4.24 12.08 32.07 0.39 -3.85 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.22 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.42 8.51 6.40 -40.82 -0.26 8.25 16 35 H 0.06 1.32 7.54 -51.93 -0.39 0.92 16 36 H 0.06 1.09 8.05 -51.93 -0.42 0.68 16 37 H 0.11 1.69 8.05 -52.48 -0.42 1.27 16 38 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.75 8.05 -52.49 -0.42 1.32 16 41 H 0.10 2.43 7.13 -51.93 -0.37 2.06 16 42 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.01 0.15 7.48 -51.93 -0.39 -0.24 16 44 H 0.09 2.41 5.94 -51.93 -0.31 2.10 16 45 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -33.22 373.80 -10.42 -43.64 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.87 Total: 9.70 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -5.08 Total: 3.50 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.16 Total: -66.22 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.22 -10.42 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948913419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.299 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds