Wall clock time and date at job start Sat Apr 11 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34582 * 125.75018 * 2 1 4 4 N 1.30870 * 107.62780 * 179.97438 * 3 2 1 5 5 C 1.34549 * 107.26883 * 0.02562 * 4 3 2 6 6 C 1.47870 * 126.04821 * 180.02562 * 5 4 3 7 7 O 1.21557 * 119.99850 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99811 * 0.02562 * 6 5 4 9 9 C 1.46497 * 119.99933 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47378 * 185.51414 * 9 8 6 11 11 H 1.08997 * 109.43597 * 300.59739 * 10 9 8 12 12 C 1.50810 * 109.43771 * 180.68329 * 10 9 8 13 13 C 1.38831 * 117.80791 * 48.69444 * 12 10 9 14 14 C 1.37962 * 120.50692 * 179.38208 * 13 12 10 15 15 C 1.38254 * 119.71559 * 359.81777 * 14 13 12 16 16 C 1.37902 * 119.83093 * 0.26241 * 15 14 13 17 17 C 1.37671 * 122.34605 * 228.57030 * 12 10 9 18 18 C 1.50591 * 122.85688 * 1.18515 * 17 12 10 19 19 C 1.52798 * 110.91138 * 340.08638 * 18 17 12 20 20 N 1.46684 * 109.40036 * 60.48565 * 10 9 8 21 21 C 1.36936 * 121.32573 * 344.40582 * 20 10 9 22 22 H 1.08008 * 119.99664 * 33.53016 * 21 20 10 23 23 C 1.38807 * 119.99875 * 213.52296 * 21 20 10 24 24 N 1.31618 * 120.00491 * 12.54940 * 23 21 20 25 25 Si 1.86801 * 119.99967 * 192.54625 * 23 21 20 26 26 H 1.48506 * 109.47125 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47523 * 120.00146 * 25 23 21 28 28 H 1.48503 * 109.47155 * 240.00560 * 25 23 21 29 29 N 1.28850 * 125.74873 * 180.31373 * 2 1 3 30 30 H 1.08991 * 109.47114 * 90.00166 * 1 2 3 31 31 H 1.09000 * 109.46863 * 210.00113 * 1 2 3 32 32 H 1.08998 * 109.47095 * 329.99454 * 1 2 3 33 33 H 1.08008 * 126.18423 * 0.02562 * 3 2 1 34 34 H 0.97002 * 120.00138 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.47233 * 65.51231 * 9 8 6 36 36 H 1.09008 * 109.47405 * 305.51320 * 9 8 6 37 37 H 1.08004 * 119.75040 * 359.35986 * 13 12 10 38 38 H 1.07999 * 120.13946 * 179.83703 * 14 13 12 39 39 H 1.08008 * 120.08497 * 180.23705 * 15 14 13 40 40 H 1.07999 * 119.71280 * 180.02562 * 16 15 14 41 41 H 1.08991 * 109.32409 * 219.61628 * 18 17 12 42 42 H 1.09002 * 108.98148 * 100.32897 * 18 17 12 43 43 H 1.09005 * 109.77081 * 287.74199 * 19 18 17 44 44 H 1.08998 * 109.81933 * 166.97743 * 19 18 17 45 45 H 0.96994 * 120.00676 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6852 0.0006 5 6 3.4751 -0.6602 0.0003 6 6 4.6575 -1.5481 0.0013 7 8 4.5114 -2.7548 0.0005 8 7 5.8972 -1.0193 0.0031 9 6 7.0687 -1.8989 0.0035 10 6 8.3385 -1.0571 0.1442 11 1 8.4013 -0.3538 -0.6861 12 6 9.5449 -1.9620 0.1277 13 6 9.6264 -2.9143 -0.8793 14 6 10.7119 -3.7625 -0.9548 15 6 11.7276 -3.6604 -0.0224 16 6 11.6469 -2.7160 0.9793 17 6 10.5487 -1.8684 1.0651 18 6 10.5184 -0.8773 2.1985 19 6 9.5548 0.2690 1.8950 20 7 8.2941 -0.3160 1.4093 21 6 7.1264 -0.1735 2.1102 22 1 6.3911 -0.9645 2.1011 23 6 6.8879 0.9876 2.8327 24 7 7.6530 2.0434 2.6531 25 14 5.4810 1.0516 4.0599 26 1 4.7775 -0.2561 4.0751 27 1 6.0180 1.3401 5.4140 28 1 4.5293 2.1216 3.6664 29 7 2.2178 -1.0457 -0.0057 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.9164 2.1191 0.0004 34 1 6.0137 -0.0563 0.0041 35 1 7.1045 -2.4568 -0.9322 36 1 7.0000 -2.5953 0.8393 37 1 8.8340 -2.9919 -1.6090 38 1 10.7680 -4.5029 -1.7390 39 1 12.5819 -4.3189 -0.0781 40 1 12.4416 -2.6377 1.7064 41 1 11.5191 -0.4735 2.3514 42 1 10.1949 -1.3867 3.1063 43 1 9.9810 0.9156 1.1279 44 1 9.3689 0.8453 2.8012 45 1 7.4862 2.8548 3.1576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948913420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:53 Heat of formation + Delta-G solvation = 121.783288 kcal Electronic energy + Delta-G solvation = -30085.325360 eV Core-core repulsion = 26105.986687 eV Total energy + Delta-G solvation = -3979.338674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.21430 -39.64464 -38.66528 -36.26634 -34.47182 -34.10790 -32.39184 -31.97639 -31.54123 -29.81996 -28.92641 -27.88799 -26.39223 -24.91778 -23.37951 -22.50089 -22.12518 -21.87219 -20.73483 -19.95099 -18.96249 -17.91821 -16.67176 -16.58076 -16.06488 -15.94044 -15.62927 -15.50745 -14.75570 -14.41157 -14.33579 -14.20925 -13.77380 -13.60640 -13.35358 -13.34734 -13.09614 -12.86517 -12.62031 -12.32272 -11.96276 -11.78276 -11.75975 -11.35480 -11.18485 -10.89259 -10.79142 -10.69242 -10.46435 -10.25688 -10.18267 -10.09253 -9.83333 -9.67253 -9.53702 -9.36462 -8.62056 -8.32360 -8.15486 -8.01028 -6.63815 -5.82981 -3.32872 1.64437 1.81532 1.86244 2.30705 2.40131 3.34286 3.42215 3.47632 3.57878 3.89488 4.21918 4.35532 4.43873 4.46990 4.80502 4.94794 5.07354 5.20230 5.24690 5.29671 5.33374 5.38457 5.44504 5.58328 5.71862 5.86011 6.00847 6.07716 6.17905 6.25390 6.26075 6.33276 6.44889 6.51121 6.52744 6.62309 6.72255 6.77242 6.90477 6.91578 7.09563 7.19916 7.35281 7.46301 7.65861 7.82422 8.05385 8.38889 8.42454 8.81710 9.14889 9.75121 10.36024 11.23791 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.004090 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.178632 B = 6844.817715 C = 8580.755153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.313 5.313 3 C 0.184 3.816 4 N -0.468 5.468 5 C 0.156 3.844 6 C 0.606 3.394 7 O -0.543 6.543 8 N -0.670 5.670 9 C 0.138 3.862 10 C 0.195 3.805 11 H 0.047 0.953 12 C -0.076 4.076 13 C -0.120 4.120 14 C -0.134 4.134 15 C -0.130 4.130 16 C -0.132 4.132 17 C -0.047 4.047 18 C -0.108 4.108 19 C 0.162 3.838 20 N -0.583 5.583 21 C -0.251 4.251 22 H 0.073 0.927 23 C 0.018 3.982 24 N -0.895 5.895 25 Si 0.894 3.106 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.288 1.288 29 N -0.262 5.262 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.223 0.777 34 H 0.425 0.575 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.102 0.898 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 -1.921 -6.522 8.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.109 5.109 3 C -0.112 4.112 4 N -0.192 5.192 5 C -0.125 4.125 6 C 0.387 3.613 7 O -0.419 6.419 8 N -0.323 5.323 9 C 0.014 3.986 10 C 0.088 3.912 11 H 0.064 0.936 12 C -0.078 4.078 13 C -0.138 4.138 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.047 4.047 18 C -0.147 4.147 19 C 0.036 3.964 20 N -0.306 5.306 21 C -0.380 4.380 22 H 0.090 0.910 23 C -0.182 4.182 24 N -0.538 5.538 25 Si 0.724 3.276 26 H -0.205 1.205 27 H -0.216 1.216 28 H -0.215 1.215 29 N -0.101 5.101 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.240 0.760 34 H 0.265 0.735 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.120 0.880 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.450 -3.067 -6.433 8.972 hybrid contribution -0.941 0.860 0.789 1.499 sum -6.391 -2.207 -5.644 8.807 Atomic orbital electron populations 1.22154 0.72813 1.05688 1.04572 1.47377 1.09030 1.04052 1.50409 1.26524 0.86045 0.95847 1.02778 1.71409 1.19851 1.09472 1.18491 1.23891 0.92107 0.89531 1.06926 1.16242 0.81347 0.85605 0.78062 1.90764 1.85898 1.13590 1.51638 1.45788 1.03458 1.12535 1.70477 1.21415 0.83566 0.92553 1.01087 1.19536 0.88995 0.91298 0.91390 0.93619 1.20164 0.96768 0.96539 0.94368 1.21152 0.98164 0.95998 0.98521 1.20919 0.94833 0.99953 0.99530 1.20921 0.98830 0.99016 0.96008 1.21198 0.98323 0.96609 0.98840 1.19718 0.92852 0.96367 0.95803 1.21196 1.00383 0.97559 0.95551 1.20913 0.83579 0.91299 1.00569 1.43988 1.05590 1.61757 1.19285 1.19232 0.95898 0.98706 1.24168 0.90990 1.25044 0.97668 0.94831 1.00616 1.69941 1.39956 1.01891 1.42032 0.86339 0.82452 0.77652 0.81176 1.20452 1.21648 1.21484 1.74303 1.03060 1.13102 1.19663 0.89447 0.88453 0.88257 0.76032 0.73545 0.92050 0.90871 0.86346 0.86792 0.86974 0.86864 0.92334 0.91229 0.95985 0.88027 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.38 59.85 0.68 1.26 16 2 N -0.31 -4.08 3.72 -69.39 -0.26 -4.34 16 3 C 0.18 2.46 12.62 -90.48 -1.14 1.31 16 4 N -0.47 -8.63 11.09 -12.36 -0.14 -8.77 16 5 C 0.16 3.12 7.96 -156.35 -1.24 1.88 16 6 C 0.61 13.17 7.80 -12.32 -0.10 13.07 16 7 O -0.54 -12.87 17.08 5.32 0.09 -12.78 16 8 N -0.67 -14.01 3.44 -61.24 -0.21 -14.22 16 9 C 0.14 2.73 4.13 -4.04 -0.02 2.72 16 10 C 0.20 3.96 3.05 -68.93 -0.21 3.75 16 11 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 12 C -0.08 -1.42 5.43 -104.56 -0.57 -1.99 16 13 C -0.12 -1.93 9.06 -39.46 -0.36 -2.29 16 14 C -0.13 -1.94 10.05 -39.68 -0.40 -2.34 16 15 C -0.13 -1.86 10.04 -39.70 -0.40 -2.26 16 16 C -0.13 -2.08 9.59 -39.43 -0.38 -2.46 16 17 C -0.05 -0.87 5.76 -104.60 -0.60 -1.47 16 18 C -0.11 -2.06 5.86 -28.04 -0.16 -2.23 16 19 C 0.16 3.65 5.59 -3.75 -0.02 3.63 16 20 N -0.58 -13.63 2.92 -166.32 -0.49 -14.12 16 21 C -0.25 -6.41 7.11 -15.06 -0.11 -6.52 16 22 H 0.07 1.93 5.74 -52.48 -0.30 1.63 16 23 C 0.02 0.48 5.06 -17.43 -0.09 0.39 16 24 N -0.89 -24.34 11.15 55.49 0.62 -23.72 16 25 Si 0.89 21.83 29.57 -169.99 -5.03 16.80 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 N -0.26 -4.73 12.08 32.07 0.39 -4.34 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.22 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.42 9.31 7.07 -40.82 -0.29 9.02 16 35 H 0.06 1.09 6.61 -51.93 -0.34 0.75 16 36 H 0.07 1.60 7.80 -51.92 -0.41 1.20 16 37 H 0.12 1.72 6.69 -52.48 -0.35 1.37 16 38 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.11 1.56 8.05 -52.49 -0.42 1.14 16 41 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 2.56 5.86 -51.93 -0.30 2.25 16 45 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -33.94 370.14 -10.33 -44.28 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.78 Total: 9.18 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -5.11 Total: 6.46 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -0.09 Total: -69.51 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.94 -10.33 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948913420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.059 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds