Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28720 * 126.03470 * 2 1 4 4 N 1.28519 * 110.63545 * 180.26333 * 3 2 1 5 5 C 1.33319 * 109.44058 * 359.75507 * 4 3 2 6 6 C 1.37012 * 106.37125 * 359.97438 * 5 4 3 7 7 C 1.47232 * 127.18372 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99519 * 185.08270 * 7 6 5 9 9 N 1.34777 * 120.00599 * 5.08036 * 7 6 5 10 10 C 1.46500 * 120.00049 * 184.73733 * 9 7 6 11 11 C 1.53002 * 109.46764 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.40319 * 64.89105 * 11 10 9 13 13 C 1.50814 * 109.43883 * 184.78579 * 11 10 9 14 14 C 1.38836 * 117.80284 * 289.22976 * 13 11 10 15 15 C 1.37952 * 120.50300 * 178.85082 * 14 13 11 16 16 C 1.38264 * 119.72183 * 0.04039 * 15 14 13 17 17 C 1.37903 * 119.82459 * 0.23014 * 16 15 14 18 18 C 1.37675 * 122.34411 * 108.52932 * 13 11 10 19 19 C 1.50604 * 122.85639 * 1.44885 * 18 13 11 20 20 C 1.52784 * 110.85586 * 339.82491 * 19 18 13 21 21 N 1.46688 * 109.43398 * 304.99545 * 11 10 9 22 22 C 1.36935 * 121.33240 * 104.61005 * 21 11 10 23 23 H 1.08004 * 119.99997 * 322.75651 * 22 21 11 24 24 C 1.38812 * 120.00116 * 142.76426 * 22 21 11 25 25 N 1.31614 * 119.99966 * 348.84015 * 24 22 21 26 26 Si 1.86808 * 119.99969 * 168.83914 * 24 22 21 27 27 H 1.48504 * 109.47002 * 90.00124 * 26 24 22 28 28 H 1.48501 * 109.47223 * 209.99862 * 26 24 22 29 29 H 1.48502 * 109.47288 * 329.99997 * 26 24 22 30 30 H 1.09000 * 109.46815 * 264.86954 * 1 2 3 31 31 H 1.08997 * 109.47434 * 24.87492 * 1 2 3 32 32 H 1.09007 * 109.46704 * 144.87321 * 1 2 3 33 33 H 1.07992 * 126.81421 * 179.97438 * 5 4 3 34 34 H 0.96995 * 119.99720 * 4.73451 * 9 7 6 35 35 H 1.08997 * 109.47220 * 60.00045 * 10 9 7 36 36 H 1.08993 * 109.46982 * 299.99632 * 10 9 7 37 37 H 1.07997 * 119.74523 * 358.85051 * 14 13 11 38 38 H 1.08007 * 120.13780 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.08810 * 180.24887 * 16 15 14 40 40 H 1.08004 * 119.71199 * 179.97438 * 17 16 15 41 41 H 1.09004 * 109.19747 * 219.47284 * 19 18 13 42 42 H 1.08997 * 109.16558 * 100.16133 * 19 18 13 43 43 H 1.08999 * 109.77540 * 287.89634 * 20 19 18 44 44 H 1.09005 * 109.81767 * 167.12356 * 20 19 18 45 45 H 0.97001 * 120.00098 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4613 0.6996 -0.0055 5 6 3.5552 -0.6302 -0.0041 6 6 2.2712 -1.1081 0.0034 7 6 1.8464 -2.5178 0.0072 8 8 0.6659 -2.7973 -0.0794 9 7 2.7655 -3.4985 0.1065 10 6 2.3542 -4.9009 0.0060 11 6 3.5808 -5.8038 0.1516 12 1 3.9947 -5.6935 1.1539 13 6 3.1760 -7.2398 -0.0689 14 6 2.4025 -7.8519 0.9082 15 6 1.9812 -9.1562 0.7525 16 6 2.3328 -9.8590 -0.3851 17 6 3.1057 -9.2539 -1.3537 18 6 3.5344 -7.9410 -1.1981 19 6 4.3842 -7.3495 -2.2919 20 6 4.3584 -5.8230 -2.2353 21 7 4.5913 -5.4178 -0.8391 22 6 5.7092 -4.7139 -0.4789 23 1 5.6437 -3.9471 0.2789 24 6 6.9267 -4.9857 -1.0877 25 7 7.0603 -6.0547 -1.8437 26 14 8.3756 -3.8340 -0.8341 27 1 9.1537 -4.2714 0.3527 28 1 9.2475 -3.8633 -2.0359 29 1 7.8774 -2.4519 -0.6176 30 1 -0.3633 -0.0919 1.0236 31 1 -0.3634 0.9323 -0.4323 32 1 -0.3633 -0.8406 -0.5914 33 1 4.4633 -1.2148 -0.0081 34 1 3.6994 -3.2757 0.2445 35 1 1.8880 -5.0742 -0.9639 36 1 1.6405 -5.1278 0.7979 37 1 2.1287 -7.3027 1.7968 38 1 1.3793 -9.6265 1.5161 39 1 2.0028 -10.8792 -0.5149 40 1 3.3797 -9.8047 -2.2414 41 1 4.0040 -7.6789 -3.2589 42 1 5.4110 -7.6954 -2.1739 43 1 3.3868 -5.4579 -2.5680 44 1 5.1432 -5.4162 -2.8731 45 1 7.9110 -6.2444 -2.2695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948916457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = 112.989324 kcal Electronic energy + Delta-G solvation = -30052.935359 eV Core-core repulsion = 26073.215350 eV Total energy + Delta-G solvation = -3979.720009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.23769 -39.71488 -38.98047 -36.38168 -34.85851 -34.13597 -32.44312 -32.27189 -31.16522 -29.97333 -28.71231 -28.09525 -27.03168 -24.69172 -23.43177 -22.71428 -22.31365 -21.88049 -21.18941 -20.33138 -18.81294 -18.03065 -16.89583 -16.78757 -16.49249 -15.97563 -15.51135 -15.47409 -14.77072 -14.56293 -14.44915 -14.20098 -14.02194 -13.78870 -13.41407 -13.36337 -13.05571 -12.76750 -12.62270 -12.47995 -12.29097 -12.03325 -11.73829 -11.33774 -11.18091 -11.15862 -11.09921 -10.89732 -10.77830 -10.48558 -10.21805 -10.19807 -10.05951 -9.95413 -9.55412 -9.47468 -8.77093 -8.66651 -8.29185 -7.95207 -6.77209 -6.00885 -3.58228 0.98474 1.83159 1.91203 2.11654 2.35639 3.20351 3.26434 3.34016 3.34976 3.35936 4.25409 4.29275 4.38491 4.56931 4.79084 4.93062 5.09318 5.14387 5.20727 5.27475 5.32486 5.37959 5.40258 5.52909 5.57468 5.73474 5.80011 5.91720 6.00654 6.03732 6.13494 6.32463 6.36531 6.38969 6.48712 6.53918 6.62046 6.68875 6.72517 6.92910 6.97191 7.27333 7.30740 7.47244 7.55102 7.63870 7.71006 8.23247 8.26951 8.37630 8.97446 9.55459 10.20311 11.05456 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.004514 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.546141 B = 6200.859449 C = 8698.957451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.260 5.260 3 N -0.068 5.068 4 N -0.275 5.275 5 C 0.008 3.992 6 C -0.065 4.065 7 C 0.589 3.411 8 O -0.553 6.553 9 N -0.684 5.684 10 C 0.115 3.885 11 C 0.191 3.809 12 H 0.080 0.920 13 C -0.080 4.080 14 C -0.119 4.119 15 C -0.140 4.140 16 C -0.127 4.127 17 C -0.135 4.135 18 C -0.036 4.036 19 C -0.100 4.100 20 C 0.171 3.829 21 N -0.577 5.577 22 C -0.271 4.271 23 H 0.063 0.937 24 C 0.024 3.976 25 N -0.886 5.886 26 Si 0.900 3.100 27 H -0.285 1.285 28 H -0.289 1.289 29 H -0.274 1.274 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.203 0.797 34 H 0.414 0.586 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.046 0.954 42 H 0.109 0.891 43 H 0.007 0.993 44 H 0.083 0.917 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.678 0.963 2.862 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.056 5.056 3 N -0.049 5.049 4 N -0.138 5.138 5 C -0.153 4.153 6 C -0.199 4.199 7 C 0.373 3.627 8 O -0.432 6.432 9 N -0.335 5.335 10 C -0.011 4.011 11 C 0.083 3.917 12 H 0.097 0.903 13 C -0.082 4.082 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.146 4.146 17 C -0.153 4.153 18 C -0.036 4.036 19 C -0.139 4.139 20 C 0.046 3.954 21 N -0.298 5.298 22 C -0.400 4.400 23 H 0.081 0.919 24 C -0.178 4.178 25 N -0.527 5.527 26 Si 0.729 3.271 27 H -0.212 1.212 28 H -0.215 1.215 29 H -0.199 1.199 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.132 0.868 33 H 0.220 0.780 34 H 0.253 0.747 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.065 0.935 42 H 0.127 0.873 43 H 0.025 0.975 44 H 0.101 0.899 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.300 2.251 2.667 11.827 hybrid contribution 1.160 -0.848 0.169 1.447 sum -10.140 1.403 2.836 10.622 Atomic orbital electron populations 1.22477 0.71716 1.06301 1.05589 1.47583 1.09704 1.03561 1.44800 1.78235 0.96878 1.11659 1.18155 1.74889 1.08930 1.12787 1.17144 1.24080 0.97133 0.91745 1.02335 1.22062 0.91450 0.91034 1.15397 1.16677 0.85863 0.82570 0.77613 1.90755 1.16729 1.83773 1.51979 1.45650 1.11483 1.05913 1.70412 1.22035 0.98308 0.79182 1.01528 1.19659 0.89207 0.87377 0.95484 0.90256 1.20043 0.97278 0.96846 0.94016 1.21096 0.98544 0.95202 0.98890 1.20875 1.01888 0.95038 0.98014 1.20916 0.99578 0.99271 0.94786 1.21196 0.99576 0.95173 0.99364 1.19844 0.95136 0.93078 0.95540 1.21064 1.00504 0.99226 0.93077 1.20655 0.96949 0.91100 0.86708 1.44015 1.21039 1.63443 1.01316 1.18881 0.85482 1.12387 1.23279 0.91947 1.25291 0.97290 0.95859 0.99337 1.69873 1.24693 1.24554 1.33557 0.86356 0.82508 0.80748 0.77469 1.21196 1.21511 1.19917 0.88906 0.88140 0.86774 0.78029 0.74731 0.91696 0.91873 0.86775 0.86990 0.87089 0.86929 0.93526 0.87330 0.97529 0.89877 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.83 59.85 0.65 1.41 16 2 N -0.26 -3.57 3.79 -64.12 -0.24 -3.81 16 3 N -0.07 -1.05 13.14 60.35 0.79 -0.26 16 4 N -0.27 -4.49 12.35 30.47 0.38 -4.11 16 5 C 0.01 0.11 11.54 -17.35 -0.20 -0.09 16 6 C -0.07 -0.97 6.98 -82.33 -0.57 -1.55 16 7 C 0.59 9.28 7.80 -12.61 -0.10 9.19 16 8 O -0.55 -9.52 14.97 5.26 0.08 -9.44 16 9 N -0.68 -10.74 5.37 -61.45 -0.33 -11.07 16 10 C 0.12 1.88 5.01 -4.04 -0.02 1.86 16 11 C 0.19 3.46 2.50 -68.92 -0.17 3.29 16 12 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 13 C -0.08 -1.43 5.17 -104.55 -0.54 -1.97 16 14 C -0.12 -1.85 9.33 -39.46 -0.37 -2.21 16 15 C -0.14 -2.01 10.05 -39.68 -0.40 -2.41 16 16 C -0.13 -1.86 10.04 -39.69 -0.40 -2.26 16 17 C -0.13 -2.20 9.59 -39.43 -0.38 -2.58 16 18 C -0.04 -0.66 5.76 -104.60 -0.60 -1.27 16 19 C -0.10 -1.98 5.75 -28.04 -0.16 -2.14 16 20 C 0.17 3.57 5.44 -3.76 -0.02 3.55 16 21 N -0.58 -12.00 2.24 -166.32 -0.37 -12.38 16 22 C -0.27 -6.14 8.82 -15.06 -0.13 -6.27 16 23 H 0.06 1.33 6.96 -52.48 -0.37 0.97 16 24 C 0.02 0.58 5.04 -17.43 -0.09 0.49 16 25 N -0.89 -22.27 10.06 55.49 0.56 -21.71 16 26 Si 0.90 19.32 29.57 -169.99 -5.03 14.29 16 27 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 1.16 6.66 -51.92 -0.35 0.81 16 33 H 0.20 2.67 7.59 -52.49 -0.40 2.27 16 34 H 0.41 6.50 5.61 -40.82 -0.23 6.27 16 35 H 0.06 1.16 7.54 -51.93 -0.39 0.76 16 36 H 0.06 0.97 8.02 -51.93 -0.42 0.55 16 37 H 0.11 1.54 8.05 -52.49 -0.42 1.11 16 38 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.11 1.65 8.05 -52.48 -0.42 1.23 16 41 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.11 2.47 6.68 -51.93 -0.35 2.12 16 43 H 0.01 0.14 7.48 -51.93 -0.39 -0.25 16 44 H 0.08 1.93 6.53 -51.93 -0.34 1.60 16 45 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -27.93 368.43 -7.85 -35.78 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.73 Total: 10.11 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.51 Total: -2.96 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.78 Total: -53.33 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.93 -7.85 -35.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948916457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.765 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds