Wall clock time and date at job start Sat Apr 11 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28710 * 126.03525 * 2 1 4 4 N 1.28513 * 110.63865 * 180.26011 * 3 2 1 5 5 C 1.33323 * 109.43871 * 359.75745 * 4 3 2 6 6 C 1.37010 * 106.36888 * 359.97438 * 5 4 3 7 7 C 1.47238 * 127.18806 * 179.97438 * 6 5 4 8 8 O 1.21611 * 119.99821 * 184.97956 * 7 6 5 9 9 N 1.34777 * 119.99648 * 4.97176 * 7 6 5 10 10 C 1.46500 * 119.99745 * 185.32774 * 9 7 6 11 11 C 1.53004 * 109.47052 * 179.17564 * 10 9 7 12 12 H 1.09000 * 109.43370 * 301.25843 * 11 10 9 13 13 C 1.50813 * 109.43339 * 181.34481 * 11 10 9 14 14 C 1.38829 * 117.80749 * 48.69494 * 13 11 10 15 15 C 1.37959 * 120.50804 * 179.37672 * 14 13 11 16 16 C 1.38259 * 119.71402 * 359.82009 * 15 14 13 17 17 C 1.37910 * 119.83119 * 0.26149 * 16 15 14 18 18 C 1.37673 * 122.34459 * 228.56737 * 13 11 10 19 19 C 1.50592 * 122.85271 * 1.18935 * 18 13 11 20 20 C 1.52784 * 110.91716 * 340.08380 * 19 18 13 21 21 N 1.46676 * 109.39918 * 61.15090 * 11 10 9 22 22 C 1.36937 * 121.32898 * 344.40112 * 21 11 10 23 23 H 1.08002 * 120.00000 * 36.64971 * 22 21 11 24 24 C 1.38816 * 120.00260 * 216.64539 * 22 21 11 25 25 N 1.31620 * 119.99787 * 11.14390 * 24 22 21 26 26 Si 1.86803 * 119.99925 * 191.14353 * 24 22 21 27 27 H 1.48504 * 109.47236 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46899 * 120.00147 * 26 24 22 29 29 H 1.48495 * 109.46889 * 240.00181 * 26 24 22 30 30 H 1.08998 * 109.47169 * 273.06178 * 1 2 3 31 31 H 1.09007 * 109.46739 * 33.05931 * 1 2 3 32 32 H 1.08992 * 109.47236 * 153.05653 * 1 2 3 33 33 H 1.07994 * 126.81858 * 179.97438 * 5 4 3 34 34 H 0.97004 * 120.00351 * 5.33534 * 9 7 6 35 35 H 1.08997 * 109.47076 * 59.17666 * 10 9 7 36 36 H 1.09003 * 109.47144 * 299.17407 * 10 9 7 37 37 H 1.08000 * 119.74837 * 359.35934 * 14 13 11 38 38 H 1.08004 * 120.14407 * 179.83961 * 15 14 13 39 39 H 1.08003 * 120.08739 * 180.23667 * 16 15 14 40 40 H 1.07993 * 119.71163 * 180.02562 * 17 16 15 41 41 H 1.08995 * 109.31897 * 219.60789 * 19 18 13 42 42 H 1.09009 * 108.98047 * 100.33584 * 19 18 13 43 43 H 1.09003 * 109.77522 * 287.74640 * 20 19 18 44 44 H 1.08997 * 109.82075 * 166.97592 * 20 19 18 45 45 H 0.97000 * 119.99343 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6996 -0.0055 5 6 3.5552 -0.6303 -0.0040 6 6 2.2712 -1.1081 0.0034 7 6 1.8462 -2.5178 0.0071 8 8 0.6657 -2.7972 -0.0776 9 7 2.7656 -3.4985 0.1043 10 6 2.3559 -4.9005 -0.0092 11 6 3.5853 -5.8027 0.1154 12 1 4.3016 -5.5496 -0.6662 13 6 3.1672 -7.2440 -0.0345 14 6 2.3512 -7.5732 -1.1084 15 6 1.9460 -8.8771 -1.3061 16 6 2.3590 -9.8635 -0.4298 17 6 3.1682 -9.5373 0.6383 18 6 3.5679 -8.2227 0.8469 19 6 4.4326 -7.9375 2.0464 20 6 5.1763 -6.6133 1.8803 21 7 4.2055 -5.6024 1.4294 22 6 3.8945 -4.5180 2.2057 23 1 2.8835 -4.1383 2.2228 24 6 4.8785 -3.9067 2.9706 25 7 6.1436 -4.2212 2.7887 26 14 4.4072 -2.6379 4.2580 27 1 2.9323 -2.4649 4.2658 28 1 4.8581 -3.0989 5.5956 29 1 5.0563 -1.3417 3.9362 30 1 -0.3633 0.0549 1.0262 31 1 -0.3633 0.8614 -0.5606 32 1 -0.3633 -0.9160 -0.4656 33 1 4.4632 -1.2149 -0.0080 34 1 3.6986 -3.2761 0.2495 35 1 1.8823 -5.0633 -0.9773 36 1 1.6489 -5.1379 0.7858 37 1 2.0310 -6.8028 -1.7941 38 1 1.3091 -9.1262 -2.1420 39 1 2.0485 -10.8868 -0.5810 40 1 3.4901 -10.3094 1.3214 41 1 5.1570 -8.7427 2.1683 42 1 3.8018 -7.8856 2.9339 43 1 5.9654 -6.7242 1.1365 44 1 5.6086 -6.3100 2.8338 45 1 6.8311 -3.7943 3.3235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948916458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:59 Heat of formation + Delta-G solvation = 120.538874 kcal Electronic energy + Delta-G solvation = -30321.145631 eV Core-core repulsion = 26341.752995 eV Total energy + Delta-G solvation = -3979.392636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.10318 -39.80244 -38.92939 -36.46288 -34.76357 -34.10505 -32.56630 -32.39180 -31.06790 -29.97582 -28.85647 -27.96841 -26.64903 -25.11222 -23.43937 -22.64894 -22.27292 -21.96219 -20.83514 -20.20251 -19.10376 -17.98369 -16.76270 -16.65153 -16.24432 -16.06087 -15.78474 -15.47467 -14.75619 -14.49096 -14.36758 -14.22734 -13.93193 -13.73610 -13.44206 -13.26774 -13.15516 -12.92236 -12.73989 -12.48976 -12.11139 -11.98948 -11.89431 -11.49168 -11.30171 -11.04228 -10.97320 -10.93392 -10.82847 -10.60379 -10.24152 -10.08776 -9.98021 -9.80563 -9.67082 -9.32846 -8.80429 -8.44193 -8.43301 -8.12203 -6.78165 -6.01921 -3.56660 1.13134 1.70711 1.75512 2.24429 2.48977 3.23036 3.34413 3.35851 3.37118 3.50582 4.11278 4.27725 4.50561 4.71362 4.93320 5.04698 5.08235 5.13563 5.17474 5.24385 5.26237 5.31375 5.38912 5.44358 5.56054 5.72284 5.74083 5.89255 5.92067 6.07886 6.14422 6.16463 6.21330 6.32682 6.40978 6.50153 6.59896 6.62221 6.76076 6.80464 6.86085 7.06973 7.22465 7.34365 7.50552 7.63312 7.88687 8.26104 8.42824 8.51477 8.96225 9.55583 10.19781 11.03665 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.004430 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.871285 B = 6319.108342 C = 8169.948478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.261 5.261 3 N -0.071 5.071 4 N -0.276 5.276 5 C 0.007 3.993 6 C -0.060 4.060 7 C 0.587 3.413 8 O -0.559 6.559 9 N -0.673 5.673 10 C 0.139 3.861 11 C 0.195 3.805 12 H 0.048 0.952 13 C -0.078 4.078 14 C -0.120 4.120 15 C -0.134 4.134 16 C -0.129 4.129 17 C -0.131 4.131 18 C -0.047 4.047 19 C -0.109 4.109 20 C 0.164 3.836 21 N -0.583 5.583 22 C -0.263 4.263 23 H 0.071 0.929 24 C 0.020 3.980 25 N -0.888 5.888 26 Si 0.888 3.112 27 H -0.278 1.278 28 H -0.286 1.286 29 H -0.284 1.284 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.201 0.799 34 H 0.421 0.579 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.024 0.976 44 H 0.096 0.904 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 -3.486 -6.845 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.057 5.057 3 N -0.052 5.052 4 N -0.139 5.139 5 C -0.154 4.154 6 C -0.194 4.194 7 C 0.370 3.630 8 O -0.439 6.439 9 N -0.325 5.325 10 C 0.016 3.984 11 C 0.088 3.912 12 H 0.065 0.935 13 C -0.080 4.080 14 C -0.139 4.139 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.047 4.047 19 C -0.147 4.147 20 C 0.039 3.961 21 N -0.307 5.307 22 C -0.392 4.392 23 H 0.088 0.912 24 C -0.181 4.181 25 N -0.530 5.530 26 Si 0.717 3.283 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.210 1.210 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.218 0.782 34 H 0.261 0.739 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.114 0.886 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.557 -2.058 -6.819 10.385 hybrid contribution 0.084 -0.550 0.954 1.104 sum -7.473 -2.608 -5.865 9.852 Atomic orbital electron populations 1.22530 0.71822 1.06722 1.05369 1.47553 1.09660 1.03580 1.44931 1.78194 0.96874 1.11745 1.18396 1.74861 1.08974 1.12822 1.17204 1.24014 0.97130 0.91706 1.02508 1.22067 0.91394 0.91104 1.14884 1.16648 0.85867 0.82592 0.77870 1.90719 1.16729 1.83697 1.52779 1.45890 1.12100 1.05409 1.69059 1.21418 0.97142 0.78974 1.00892 1.19551 0.92593 0.88269 0.90789 0.93513 1.20135 0.96994 0.96523 0.94321 1.21137 0.98518 0.96372 0.97845 1.20929 1.01240 0.93286 0.99733 1.20938 0.99117 0.98790 0.95825 1.21211 0.99336 0.96141 0.98242 1.19703 0.97008 0.92010 0.95973 1.21193 0.97884 1.00899 0.94763 1.20858 0.89859 0.84301 1.01104 1.43939 1.48892 1.24301 1.13530 1.19178 0.93365 1.05522 1.21159 0.91185 1.25200 0.95001 0.97692 1.00204 1.69947 0.98835 1.43851 1.40394 0.86442 0.78305 0.81559 0.81962 1.20268 1.21212 1.20987 0.89018 0.88386 0.86257 0.78188 0.73880 0.91788 0.90922 0.86397 0.86759 0.86913 0.86812 0.92262 0.91202 0.95778 0.88563 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 11.05 59.85 0.66 1.51 16 2 N -0.26 -4.02 3.79 -64.11 -0.24 -4.26 16 3 N -0.07 -1.21 13.14 60.35 0.79 -0.41 16 4 N -0.28 -4.92 12.35 30.47 0.38 -4.55 16 5 C 0.01 0.11 11.54 -17.35 -0.20 -0.09 16 6 C -0.06 -1.00 6.98 -82.33 -0.57 -1.58 16 7 C 0.59 10.19 7.80 -12.60 -0.10 10.10 16 8 O -0.56 -10.38 14.78 5.27 0.08 -10.30 16 9 N -0.67 -11.62 3.70 -61.44 -0.23 -11.85 16 10 C 0.14 2.39 4.14 -4.04 -0.02 2.37 16 11 C 0.20 3.53 3.05 -68.93 -0.21 3.32 16 12 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 13 C -0.08 -1.31 5.43 -104.55 -0.57 -1.88 16 14 C -0.12 -1.76 9.05 -39.46 -0.36 -2.11 16 15 C -0.13 -1.77 10.05 -39.68 -0.40 -2.17 16 16 C -0.13 -1.70 10.04 -39.69 -0.40 -2.10 16 17 C -0.13 -1.92 9.59 -39.43 -0.38 -2.30 16 18 C -0.05 -0.79 5.76 -104.60 -0.60 -1.39 16 19 C -0.11 -1.92 5.86 -28.05 -0.16 -2.08 16 20 C 0.16 3.43 5.57 -3.75 -0.02 3.41 16 21 N -0.58 -12.35 2.90 -166.33 -0.48 -12.83 16 22 C -0.26 -6.07 6.85 -15.06 -0.10 -6.17 16 23 H 0.07 1.68 5.95 -52.49 -0.31 1.36 16 24 C 0.02 0.49 5.06 -17.43 -0.09 0.41 16 25 N -0.89 -22.45 11.31 55.49 0.63 -21.82 16 26 Si 0.89 20.24 29.57 -169.99 -5.03 15.21 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.12 1.38 6.21 -51.93 -0.32 1.05 16 33 H 0.20 2.94 7.59 -52.49 -0.40 2.54 16 34 H 0.42 7.52 6.16 -40.82 -0.25 7.27 16 35 H 0.06 0.98 6.58 -51.93 -0.34 0.64 16 36 H 0.07 1.40 7.76 -51.93 -0.40 1.00 16 37 H 0.12 1.52 6.68 -52.49 -0.35 1.17 16 38 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.11 1.45 8.05 -52.49 -0.42 1.03 16 41 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 42 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.10 2.26 6.08 -51.93 -0.32 1.94 16 45 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -28.39 365.03 -7.76 -36.14 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.63 Total: 9.95 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.52 Total: -0.77 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.84 Total: -55.73 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.39 -7.76 -36.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948916458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.683 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds