Wall clock time and date at job start Sat Apr 11 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28520 * 124.44455 * 2 1 4 4 C 1.31127 * 109.06245 * 179.97438 * 3 2 1 5 5 C 1.40929 * 105.77634 * 0.02562 * 4 3 2 6 6 C 1.47796 * 127.23999 * 180.02562 * 5 4 3 7 7 O 1.21568 * 119.99651 * 0.02562 * 6 5 4 8 8 N 1.34767 * 120.00340 * 180.27349 * 6 5 4 9 9 C 1.46498 * 120.00315 * 179.72445 * 8 6 5 10 10 C 1.53000 * 109.47378 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.43754 * 64.99548 * 10 9 8 12 12 C 1.50807 * 109.43979 * 184.91550 * 10 9 8 13 13 C 1.38922 * 117.74668 * 289.10022 * 12 10 9 14 14 C 1.37958 * 120.49499 * 179.57050 * 13 12 10 15 15 C 1.38266 * 119.71428 * 359.97438 * 14 13 12 16 16 C 1.37903 * 119.82422 * 0.21457 * 15 14 13 17 17 C 1.37596 * 122.41502 * 109.03162 * 12 10 9 18 18 C 1.50600 * 122.84682 * 0.70451 * 17 12 10 19 19 C 1.52788 * 110.85673 * 340.29532 * 18 17 12 20 20 N 1.46690 * 109.43478 * 305.08402 * 10 9 8 21 21 C 1.36932 * 121.35162 * 104.26189 * 20 10 9 22 22 H 1.08003 * 119.99601 * 333.23373 * 21 20 10 23 23 C 1.38809 * 120.00246 * 153.23931 * 21 20 10 24 24 N 1.31623 * 120.00055 * 341.49965 * 23 21 20 25 25 Si 1.86796 * 120.00151 * 161.50650 * 23 21 20 26 26 H 1.48495 * 109.47577 * 89.99512 * 25 23 21 27 27 H 1.48502 * 109.47033 * 209.99827 * 25 23 21 28 28 H 1.48503 * 109.46923 * 329.99141 * 25 23 21 29 29 N 1.28587 * 124.44766 * 180.27551 * 2 1 3 30 30 H 1.08996 * 109.47225 * 90.02778 * 1 2 3 31 31 H 1.08998 * 109.47047 * 210.02573 * 1 2 3 32 32 H 1.09006 * 109.47447 * 330.02082 * 1 2 3 33 33 H 1.08005 * 127.11299 * 180.02562 * 4 3 2 34 34 H 0.97001 * 120.00225 * 359.72338 * 8 6 5 35 35 H 1.09005 * 109.47175 * 299.99779 * 9 8 6 36 36 H 1.09000 * 109.47220 * 60.00003 * 9 8 6 37 37 H 1.08004 * 119.76112 * 359.56989 * 13 12 10 38 38 H 1.08006 * 120.14022 * 180.02562 * 14 13 12 39 39 H 1.07993 * 120.08463 * 180.19272 * 15 14 13 40 40 H 1.08004 * 119.70584 * 179.97438 * 16 15 14 41 41 H 1.09003 * 109.19662 * 219.94046 * 18 17 12 42 42 H 1.09005 * 109.16544 * 100.62986 * 18 17 12 43 43 H 1.09002 * 109.77699 * 287.84842 * 19 18 17 44 44 H 1.08998 * 109.82685 * 167.06622 * 19 18 17 45 45 H 0.97001 * 120.00172 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7120 0.0006 5 6 3.4659 -0.6972 0.0003 6 6 4.6486 -1.5835 0.0013 7 8 5.7663 -1.1054 0.0029 8 7 4.4881 -2.9215 -0.0047 9 6 5.6604 -3.8000 -0.0099 10 6 5.2036 -5.2602 -0.0168 11 1 4.6800 -5.4721 -0.9490 12 6 6.4061 -6.1628 0.0998 13 6 7.2566 -6.2518 -0.9950 14 6 8.3782 -7.0537 -0.9470 15 6 8.6574 -7.7735 0.2000 16 6 7.8115 -7.6888 1.2859 17 6 6.6787 -6.8849 1.2389 18 6 5.7963 -6.8501 2.4588 19 6 4.9068 -5.6079 2.4515 20 7 4.2999 -5.4942 1.1147 21 6 2.9468 -5.6031 0.9351 22 1 2.4724 -5.1147 0.0967 23 6 2.1849 -6.3412 1.8304 24 7 2.7651 -7.2200 2.6201 25 14 0.3362 -6.0874 1.9145 26 1 -0.3342 -7.0120 0.9655 27 1 -0.1391 -6.3636 3.2940 28 1 0.0121 -4.6844 1.5511 29 7 2.1923 -1.0604 -0.0051 30 1 -0.3633 -0.0005 -1.0276 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 4.3130 1.3696 0.0011 34 1 3.5962 -3.3031 -0.0056 35 1 6.2585 -3.6026 -0.8996 36 1 6.2602 -3.6108 0.8804 37 1 7.0383 -5.6890 -1.8906 38 1 9.0357 -7.1182 -1.8014 39 1 9.5354 -8.4007 0.2453 40 1 8.0312 -8.2522 2.1807 41 1 6.4205 -6.8389 3.3524 42 1 5.1682 -7.7409 2.4717 43 1 5.5076 -4.7228 2.6602 44 1 4.1248 -5.7087 3.2041 45 1 2.2326 -7.7360 3.2455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948969411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:02 Heat of formation + Delta-G solvation = 128.016756 kcal Electronic energy + Delta-G solvation = -29888.483119 eV Core-core repulsion = 25909.414749 eV Total energy + Delta-G solvation = -3979.068370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.57875 -39.60594 -38.81019 -36.28431 -34.18409 -33.78991 -32.71731 -32.30288 -31.81919 -29.87802 -28.77164 -28.10702 -26.87724 -24.66197 -23.36859 -22.56090 -22.04605 -21.96038 -21.20372 -20.01758 -18.70076 -17.72117 -16.98366 -16.95775 -16.48383 -15.90792 -15.39828 -15.29883 -14.77165 -14.68342 -14.50200 -14.18156 -13.90171 -13.68096 -13.31060 -13.18949 -13.02877 -12.65387 -12.57596 -12.37004 -12.21081 -11.83514 -11.69571 -11.24761 -11.12690 -11.08928 -10.94593 -10.83000 -10.69856 -10.46459 -10.38602 -10.11980 -9.92170 -9.82697 -9.52710 -9.40350 -8.60547 -8.52969 -8.24058 -7.91015 -6.83491 -5.92454 -3.35625 1.45687 1.87944 1.95761 2.00775 2.18111 3.28857 3.36720 3.37738 3.49709 3.58028 4.02467 4.30597 4.36487 4.83298 4.85846 5.01125 5.12887 5.22130 5.24039 5.27864 5.38208 5.43374 5.46376 5.58664 5.73401 5.82354 5.89948 5.98253 6.00429 6.10244 6.23161 6.38278 6.45108 6.52433 6.55712 6.60234 6.71809 6.77387 6.89631 6.97378 7.03082 7.35137 7.37963 7.54370 7.62120 7.69551 7.93828 8.21723 8.27952 8.56553 9.04847 9.66914 10.25604 11.14964 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009750 B = 0.004354 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.244855 B = 6429.989868 C = 8747.997751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.148 5.148 3 N -0.297 5.297 4 C 0.030 3.970 5 C -0.040 4.040 6 C 0.601 3.399 7 O -0.545 6.545 8 N -0.687 5.687 9 C 0.113 3.887 10 C 0.193 3.807 11 H 0.078 0.922 12 C -0.079 4.079 13 C -0.118 4.118 14 C -0.139 4.139 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.039 4.039 18 C -0.096 4.096 19 C 0.165 3.835 20 N -0.579 5.579 21 C -0.256 4.256 22 H 0.068 0.932 23 C 0.011 3.989 24 N -0.892 5.892 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.278 1.278 29 N -0.239 5.239 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.206 0.794 34 H 0.418 0.582 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.101 0.899 43 H 0.007 0.993 44 H 0.094 0.906 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 7.774 -4.587 9.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.050 5.050 3 N -0.137 5.137 4 C -0.153 4.153 5 C -0.203 4.203 6 C 0.384 3.616 7 O -0.422 6.422 8 N -0.338 5.338 9 C -0.014 4.014 10 C 0.084 3.916 11 H 0.096 0.904 12 C -0.081 4.081 13 C -0.137 4.137 14 C -0.157 4.157 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.039 4.039 18 C -0.135 4.135 19 C 0.039 3.961 20 N -0.299 5.299 21 C -0.385 4.385 22 H 0.086 0.914 23 C -0.189 4.189 24 N -0.535 5.535 25 Si 0.730 3.270 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.203 1.203 29 N -0.088 5.088 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.223 0.777 34 H 0.256 0.744 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.025 0.975 44 H 0.113 0.887 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.473 7.958 -4.444 9.126 hybrid contribution -0.436 -0.351 0.086 0.566 sum 0.037 7.606 -4.358 8.767 Atomic orbital electron populations 1.22231 0.69872 1.06258 1.05194 1.48034 1.09190 0.99296 1.48494 1.73953 1.03890 1.15714 1.20149 1.24796 0.94156 0.93775 1.02599 1.23205 0.91486 0.94766 1.10887 1.16643 0.85717 0.81949 0.77315 1.90771 1.23742 1.75708 1.51974 1.45812 1.12123 1.04454 1.71427 1.21996 0.87098 0.90992 1.01265 1.19613 0.88938 0.89268 0.93792 0.90428 1.20062 0.96472 0.98275 0.93305 1.21125 0.94990 0.99401 0.98190 1.20879 0.98007 0.98907 0.97951 1.20912 0.99502 1.00229 0.93968 1.21192 0.95502 0.99982 0.98550 1.19845 0.94067 0.94025 0.95953 1.20998 0.96479 1.04111 0.91891 1.20798 0.95074 0.91412 0.88781 1.44133 1.02173 1.83424 1.00220 1.19020 0.81408 1.25976 1.12080 0.91413 1.24974 0.97929 0.95647 1.00344 1.69968 1.34721 1.23200 1.25577 0.86331 0.85588 0.78055 0.76997 1.21465 1.21658 1.20290 1.74544 1.03115 1.15215 1.15889 0.88979 0.87418 0.87760 0.77683 0.74379 0.92031 0.91746 0.86720 0.86961 0.87078 0.86915 0.93348 0.88054 0.97498 0.88746 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 11.55 59.85 0.69 1.53 16 2 N -0.15 -1.99 4.35 -16.64 -0.07 -2.06 16 3 N -0.30 -4.11 12.01 30.90 0.37 -3.74 16 4 C 0.03 0.43 12.04 -16.84 -0.20 0.23 16 5 C -0.04 -0.66 7.21 -82.68 -0.60 -1.26 16 6 C 0.60 10.98 7.83 -12.36 -0.10 10.88 16 7 O -0.55 -10.88 16.95 5.31 0.09 -10.79 16 8 N -0.69 -12.62 5.38 -61.27 -0.33 -12.95 16 9 C 0.11 2.05 5.01 -4.04 -0.02 2.03 16 10 C 0.19 3.76 2.50 -68.93 -0.17 3.59 16 11 H 0.08 1.53 7.98 -51.93 -0.41 1.11 16 12 C -0.08 -1.49 5.17 -104.55 -0.54 -2.03 16 13 C -0.12 -1.94 9.34 -39.43 -0.37 -2.30 16 14 C -0.14 -2.08 10.05 -39.67 -0.40 -2.48 16 15 C -0.13 -1.94 10.04 -39.69 -0.40 -2.33 16 16 C -0.13 -2.27 9.59 -39.43 -0.38 -2.65 16 17 C -0.04 -0.75 5.76 -104.63 -0.60 -1.35 16 18 C -0.10 -1.99 5.77 -28.04 -0.16 -2.16 16 19 C 0.16 3.68 5.46 -3.74 -0.02 3.66 16 20 N -0.58 -12.98 2.30 -166.31 -0.38 -13.36 16 21 C -0.26 -6.24 8.72 -15.06 -0.13 -6.37 16 22 H 0.07 1.61 7.29 -52.48 -0.38 1.23 16 23 C 0.01 0.27 4.93 -17.43 -0.09 0.19 16 24 N -0.89 -23.36 10.13 55.49 0.56 -22.80 16 25 Si 0.90 20.11 29.59 -169.99 -5.03 15.08 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 29 N -0.24 -3.87 11.84 33.42 0.40 -3.47 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.21 2.35 8.06 -52.48 -0.42 1.93 16 34 H 0.42 7.99 6.45 -40.82 -0.26 7.73 16 35 H 0.06 1.04 8.03 -51.93 -0.42 0.63 16 36 H 0.06 1.27 7.54 -51.93 -0.39 0.88 16 37 H 0.11 1.64 8.05 -52.48 -0.42 1.22 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.71 8.05 -52.48 -0.42 1.29 16 41 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 42 H 0.10 2.38 7.11 -51.93 -0.37 2.02 16 43 H 0.01 0.15 7.48 -51.93 -0.39 -0.24 16 44 H 0.09 2.34 5.95 -51.93 -0.31 2.04 16 45 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -30.01 373.81 -8.12 -38.13 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.87 Total: 11.16 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.48 Total: -0.83 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.54 Total: -58.38 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.01 -8.12 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948969411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.147 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds