Wall clock time and date at job start Sat Apr 11 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28512 * 124.44931 * 2 1 4 4 C 1.31136 * 109.06067 * 179.73641 * 3 2 1 5 5 C 1.40920 * 105.77288 * 0.43413 * 4 3 2 6 6 C 1.47800 * 127.23477 * 179.84095 * 5 4 3 7 7 O 1.21566 * 119.99832 * 359.70570 * 6 5 4 8 8 N 1.34773 * 120.00065 * 179.43563 * 6 5 4 9 9 C 1.46498 * 120.00070 * 180.27529 * 8 6 5 10 10 C 1.52996 * 109.47336 * 185.60696 * 9 8 6 11 11 H 1.09000 * 109.44233 * 299.79653 * 10 9 8 12 12 C 1.50813 * 109.43967 * 179.91750 * 10 9 8 13 13 C 1.38845 * 117.79684 * 49.01808 * 12 10 9 14 14 C 1.37952 * 120.50504 * 179.55746 * 13 12 10 15 15 C 1.38265 * 119.72110 * 359.96727 * 14 13 12 16 16 C 1.37899 * 119.82439 * 0.21605 * 15 14 13 17 17 C 1.37673 * 122.35859 * 228.90362 * 12 10 9 18 18 C 1.50601 * 122.87247 * 0.73156 * 17 12 10 19 19 C 1.52792 * 110.85168 * 340.28526 * 18 17 12 20 20 N 1.46696 * 109.43674 * 59.71396 * 10 9 8 21 21 C 1.36936 * 121.34461 * 344.34151 * 20 10 9 22 22 H 1.08002 * 120.00296 * 36.55838 * 21 20 10 23 23 C 1.38811 * 119.99774 * 216.55796 * 21 20 10 24 24 N 1.31617 * 119.99864 * 15.26721 * 23 21 20 25 25 Si 1.86800 * 120.00001 * 195.26927 * 23 21 20 26 26 H 1.48502 * 109.47103 * 90.00041 * 25 23 21 27 27 H 1.48498 * 109.47236 * 210.00264 * 25 23 21 28 28 H 1.48503 * 109.47115 * 330.00040 * 25 23 21 29 29 N 1.28594 * 124.43716 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47292 * 269.97820 * 1 2 3 31 31 H 1.09001 * 109.46601 * 29.97536 * 1 2 3 32 32 H 1.09004 * 109.47607 * 149.96970 * 1 2 3 33 33 H 1.08001 * 127.11070 * 180.29655 * 4 3 2 34 34 H 0.96999 * 120.00284 * 0.26519 * 8 6 5 35 35 H 1.09003 * 109.47306 * 305.61053 * 9 8 6 36 36 H 1.09009 * 109.47414 * 65.60945 * 9 8 6 37 37 H 1.07998 * 119.74354 * 359.57670 * 13 12 10 38 38 H 1.08004 * 120.13586 * 179.97438 * 14 13 12 39 39 H 1.08002 * 120.08554 * 180.23895 * 15 14 13 40 40 H 1.08001 * 119.70661 * 179.97438 * 16 15 14 41 41 H 1.08991 * 109.20400 * 219.93296 * 18 17 12 42 42 H 1.08994 * 109.16570 * 100.61064 * 18 17 12 43 43 H 1.08999 * 109.78211 * 287.84008 * 19 18 17 44 44 H 1.09001 * 109.82831 * 167.06241 * 19 18 17 45 45 H 0.97000 * 119.99914 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1920 1.0597 0.0000 4 6 3.4563 0.7118 0.0057 5 6 3.4658 -0.6974 -0.0009 6 6 4.6485 -1.5838 -0.0014 7 8 5.7663 -1.1058 -0.0012 8 7 4.4878 -2.9219 0.0033 9 6 5.6601 -3.8004 0.0088 10 6 5.2076 -5.2556 -0.1275 11 1 4.5594 -5.5139 0.7099 12 6 6.4151 -6.1591 -0.1237 13 6 7.3590 -5.9744 0.8777 14 6 8.4803 -6.7755 0.9395 15 6 8.6648 -7.7703 -0.0028 16 6 7.7300 -7.9523 -1.0001 17 6 6.6011 -7.1443 -1.0672 18 6 5.6289 -7.3952 -2.1897 19 6 4.2604 -6.7967 -1.8678 20 7 4.4704 -5.4218 -1.3848 21 6 3.9964 -4.3419 -2.0807 22 1 4.5716 -3.4286 -2.1179 23 6 2.7766 -4.4211 -2.7384 24 7 1.9404 -5.3983 -2.4587 25 14 2.3218 -3.1410 -4.0205 26 1 2.7896 -3.5904 -5.3564 27 1 0.8473 -2.9670 -4.0451 28 1 2.9672 -1.8477 -3.6793 29 7 2.1922 -1.0606 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5143 33 1 4.3131 1.3692 0.0117 34 1 3.5960 -3.3033 0.0032 35 1 6.3113 -3.5426 -0.8264 36 1 6.2037 -3.6752 0.9454 37 1 7.2139 -5.1977 1.6140 38 1 9.2109 -6.6263 1.7208 39 1 9.5387 -8.4034 0.0423 40 1 7.8762 -8.7297 -1.7354 41 1 5.5239 -8.4697 -2.3396 42 1 6.0125 -6.9416 -3.1035 43 1 3.7715 -7.3888 -1.0942 44 1 3.6429 -6.7817 -2.7660 45 1 1.0878 -5.4535 -2.9180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948969414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:08 Heat of formation + Delta-G solvation = 134.344556 kcal Electronic energy + Delta-G solvation = -30219.054296 eV Core-core repulsion = 26240.260320 eV Total energy + Delta-G solvation = -3978.793976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -43.40153 -39.68473 -38.71702 -36.31072 -34.17216 -33.63091 -32.60211 -32.45509 -31.79571 -29.89511 -28.89210 -27.94779 -26.50357 -24.99461 -23.38606 -22.52359 -22.06177 -21.85558 -20.84992 -19.86771 -19.01484 -17.63334 -16.84637 -16.78134 -16.14875 -16.02877 -15.66509 -15.26878 -14.65496 -14.55974 -14.37503 -14.29004 -13.82432 -13.60530 -13.38243 -13.10735 -12.94079 -12.85708 -12.67081 -12.37724 -12.02930 -11.83875 -11.65286 -11.43701 -11.22309 -10.95737 -10.87378 -10.77512 -10.74057 -10.52419 -10.22031 -10.17901 -9.90267 -9.70687 -9.57729 -9.23041 -8.67395 -8.36306 -8.19851 -8.05195 -6.67346 -5.92023 -3.42964 1.65122 1.77853 1.82363 2.17093 2.34227 3.27974 3.34830 3.40042 3.64750 3.81280 4.16611 4.20778 4.37338 4.95062 4.99115 5.15782 5.18872 5.22989 5.24873 5.25805 5.33739 5.38465 5.41469 5.56378 5.68462 5.82061 5.91599 5.98266 6.03519 6.15745 6.20709 6.22416 6.28289 6.40014 6.48195 6.66088 6.69118 6.73561 6.86660 6.87287 7.07293 7.12921 7.29227 7.39316 7.53452 7.76016 8.13134 8.35893 8.40320 8.77702 9.06485 9.66575 10.30728 11.14588 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.004220 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.996051 B = 6633.998932 C = 8224.550128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.150 5.150 3 N -0.300 5.300 4 C 0.028 3.972 5 C -0.036 4.036 6 C 0.600 3.400 7 O -0.552 6.552 8 N -0.674 5.674 9 C 0.137 3.863 10 C 0.195 3.805 11 H 0.046 0.954 12 C -0.076 4.076 13 C -0.120 4.120 14 C -0.134 4.134 15 C -0.130 4.130 16 C -0.131 4.131 17 C -0.048 4.048 18 C -0.108 4.108 19 C 0.166 3.834 20 N -0.582 5.582 21 C -0.255 4.255 22 H 0.070 0.930 23 C 0.022 3.978 24 N -0.890 5.890 25 Si 0.891 3.109 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.279 1.279 29 N -0.235 5.235 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.205 0.795 34 H 0.422 0.578 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.024 0.976 44 H 0.091 0.909 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 2.110 6.166 6.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.053 5.053 3 N -0.140 5.140 4 C -0.156 4.156 5 C -0.199 4.199 6 C 0.383 3.617 7 O -0.430 6.430 8 N -0.325 5.325 9 C 0.013 3.987 10 C 0.088 3.912 11 H 0.063 0.937 12 C -0.078 4.078 13 C -0.138 4.138 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.149 4.149 17 C -0.048 4.048 18 C -0.147 4.147 19 C 0.041 3.959 20 N -0.305 5.305 21 C -0.385 4.385 22 H 0.088 0.912 23 C -0.179 4.179 24 N -0.532 5.532 25 Si 0.721 3.279 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.204 1.204 29 N -0.082 5.082 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.222 0.778 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.109 0.891 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.900 2.396 6.088 6.604 hybrid contribution 0.180 0.377 -0.855 0.952 sum 1.080 2.774 5.233 6.020 Atomic orbital electron populations 1.22194 0.70084 1.06175 1.05008 1.48009 1.09117 0.99379 1.48771 1.73915 1.03896 1.15825 1.20317 1.24766 0.94111 0.93872 1.02853 1.23193 0.91560 0.94659 1.10507 1.16581 0.85637 0.81992 0.77532 1.90749 1.23746 1.75798 1.52719 1.45934 1.11960 1.04288 1.70329 1.21383 0.87582 0.88728 1.00998 1.19551 0.89898 0.90376 0.91424 0.93726 1.20168 0.96527 0.96740 0.94370 1.21148 0.94507 0.99601 0.98571 1.20926 0.98037 0.96759 0.99452 1.20925 0.99103 0.98799 0.95941 1.21195 0.94737 1.00125 0.98879 1.19691 0.95152 0.94154 0.95802 1.21180 0.98004 0.99699 0.95779 1.20796 0.91213 0.84142 0.99780 1.43939 1.63720 1.02701 1.20143 1.19123 0.99421 0.93658 1.26254 0.91229 1.25112 0.95149 0.97407 1.00238 1.69996 1.08320 1.33115 1.41770 0.86469 0.77242 0.81876 0.82344 1.21282 1.21757 1.20438 1.74577 1.03127 1.14922 1.15615 0.89059 0.87938 0.87490 0.77806 0.73822 0.90943 0.92114 0.86344 0.86765 0.86947 0.86860 0.92316 0.91164 0.95804 0.89106 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.03 11.55 59.85 0.69 1.72 16 2 N -0.15 -2.31 4.34 -16.63 -0.07 -2.38 16 3 N -0.30 -4.68 12.01 30.90 0.37 -4.31 16 4 C 0.03 0.45 12.04 -16.83 -0.20 0.25 16 5 C -0.04 -0.66 7.21 -82.68 -0.60 -1.26 16 6 C 0.60 12.03 7.82 -12.35 -0.10 11.94 16 7 O -0.55 -11.88 16.94 5.31 0.09 -11.79 16 8 N -0.67 -13.42 3.46 -61.26 -0.21 -13.63 16 9 C 0.14 2.61 4.13 -4.04 -0.02 2.60 16 10 C 0.19 3.83 3.05 -68.92 -0.21 3.62 16 11 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.08 -1.37 5.43 -104.55 -0.57 -1.94 16 13 C -0.12 -1.87 9.06 -39.46 -0.36 -2.23 16 14 C -0.13 -1.87 10.05 -39.68 -0.40 -2.27 16 15 C -0.13 -1.81 10.04 -39.70 -0.40 -2.20 16 16 C -0.13 -2.02 9.59 -39.43 -0.38 -2.40 16 17 C -0.05 -0.85 5.76 -104.60 -0.60 -1.46 16 18 C -0.11 -1.99 5.87 -28.04 -0.16 -2.16 16 19 C 0.17 3.64 5.59 -3.75 -0.02 3.62 16 20 N -0.58 -13.19 2.89 -166.31 -0.48 -13.67 16 21 C -0.26 -6.32 6.90 -15.06 -0.10 -6.42 16 22 H 0.07 1.81 5.94 -52.49 -0.31 1.49 16 23 C 0.02 0.56 4.96 -17.43 -0.09 0.47 16 24 N -0.89 -23.57 11.56 55.49 0.64 -22.93 16 25 Si 0.89 21.22 29.58 -169.99 -5.03 16.19 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 N -0.23 -4.27 11.84 33.42 0.40 -3.87 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.21 2.70 8.06 -52.49 -0.42 2.27 16 34 H 0.42 8.92 7.06 -40.82 -0.29 8.63 16 35 H 0.07 1.52 7.83 -51.93 -0.41 1.12 16 36 H 0.06 1.03 6.66 -51.92 -0.35 0.69 16 37 H 0.12 1.65 6.72 -52.49 -0.35 1.30 16 38 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.11 1.52 8.05 -52.49 -0.42 1.09 16 41 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 2.21 6.21 -51.93 -0.32 1.89 16 45 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -30.62 370.93 -8.03 -38.65 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.81 Total: 10.28 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.51 Total: 1.87 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.64 Total: -60.80 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.62 -8.03 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948969414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.991 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds