Wall clock time and date at job start Sat Apr 11 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34980 * 125.91665 * 2 1 4 4 C 1.36385 * 107.60053 * 180.02562 * 3 2 1 5 5 C 1.48518 * 126.21058 * 180.02562 * 4 3 2 6 6 C 1.35603 * 126.95894 * 309.66805 * 5 4 3 7 7 N 1.36454 * 108.67301 * 179.84292 * 6 5 4 8 8 H 0.96996 * 124.74990 * 180.15964 * 7 6 5 9 9 C 1.34647 * 110.49866 * 0.44067 * 7 6 5 10 10 C 1.36692 * 108.66443 * 359.73505 * 9 7 6 11 11 C 1.47108 * 126.96177 * 179.97438 * 10 9 7 12 12 O 1.21638 * 120.00339 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99660 * 0.02562 * 11 10 9 14 14 C 1.46497 * 119.99973 * 180.02562 * 13 11 10 15 15 H 1.09002 * 115.51652 * 350.58423 * 14 13 11 16 16 C 1.53005 * 117.44484 * 205.16887 * 14 13 11 17 17 H 1.08996 * 119.53894 * 5.71530 * 16 14 13 18 18 C 1.54386 * 118.12169 * 160.80670 * 16 14 13 19 19 N 1.48149 * 104.61724 * 87.19686 * 18 16 14 20 20 C 1.36931 * 127.84072 * 140.41206 * 19 18 16 21 21 H 1.07998 * 120.00200 * 195.56669 * 20 19 18 22 22 C 1.38816 * 120.00167 * 15.57510 * 20 19 18 23 23 N 1.31620 * 119.99876 * 9.08984 * 22 20 19 24 24 Si 1.86805 * 120.00007 * 189.09727 * 22 20 19 25 25 H 1.48502 * 109.46897 * 89.99559 * 24 22 20 26 26 H 1.48500 * 109.46986 * 209.99482 * 24 22 20 27 27 H 1.48495 * 109.46982 * 329.99514 * 24 22 20 28 28 C 1.48145 * 104.32141 * 320.41090 * 19 18 16 29 29 C 1.53005 * 117.44584 * 136.00171 * 14 13 11 30 30 H 1.09005 * 119.53667 * 355.87869 * 29 14 13 31 31 C 1.40813 * 107.57955 * 359.97438 * 4 3 2 32 32 N 1.30708 * 108.12892 * 0.24352 * 31 4 3 33 33 H 1.09000 * 109.47284 * 89.99517 * 1 2 3 34 34 H 1.08996 * 109.47407 * 209.99774 * 1 2 3 35 35 H 1.09001 * 109.46647 * 330.00079 * 1 2 3 36 36 H 1.08001 * 126.19626 * 0.02562 * 3 2 1 37 37 H 1.07994 * 125.66106 * 359.97438 * 6 5 4 38 38 H 1.08000 * 125.66377 * 179.77578 * 9 7 6 39 39 H 0.97004 * 120.00199 * 0.02562 * 13 11 10 40 40 H 1.09001 * 110.40381 * 205.97355 * 18 16 14 41 41 H 1.08999 * 110.41319 * 328.40554 * 18 16 14 42 42 H 0.96993 * 120.00125 * 180.02562 * 23 22 20 43 43 H 1.09000 * 110.40909 * 158.37361 * 28 19 18 44 44 H 1.09010 * 110.40598 * 280.80538 * 28 19 18 45 45 H 1.08002 * 125.93802 * 179.97438 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2568 1.0932 0.0000 4 6 3.5515 0.6646 -0.0006 5 6 4.7611 1.5264 -0.0003 6 6 5.0234 2.5634 -0.8337 7 7 6.2357 3.0948 -0.5018 8 1 6.6493 3.8499 -0.9484 9 6 6.7800 2.4202 0.5286 10 6 5.9216 1.4239 0.9014 11 6 6.1172 0.4466 1.9835 12 8 5.2651 -0.3921 2.2070 13 7 7.2408 0.4806 2.7271 14 6 7.4359 -0.4929 3.8043 15 1 6.5674 -1.1052 4.0468 16 6 8.3615 -0.0945 4.9557 17 1 8.7677 0.9162 4.9935 18 6 8.2419 -0.8680 6.2864 19 7 9.1384 -2.0359 6.1219 20 6 9.9721 -2.5929 7.0545 21 1 10.7501 -3.2748 6.7446 22 6 9.8171 -2.2813 8.3983 23 7 8.7660 -1.5974 8.7983 24 14 11.1003 -2.8325 9.6390 25 1 12.1431 -1.7836 9.7716 26 1 10.4517 -3.0551 10.9562 27 1 11.7260 -4.0969 9.1753 28 6 8.9283 -2.4644 4.7194 29 6 8.8145 -1.1459 3.9235 30 1 9.5792 -0.9266 3.1782 31 6 3.5334 -0.7434 -0.0003 32 7 2.2861 -1.1342 -0.0049 33 1 -0.3634 0.0001 -1.0277 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3633 0.8900 0.5138 36 1 1.9251 2.1210 0.0004 37 1 4.3789 2.9123 -1.6269 38 1 7.7356 2.6317 0.9851 39 1 7.9202 1.1497 2.5490 40 1 8.5753 -0.2472 7.1181 41 1 7.2146 -1.1966 6.4442 42 1 8.6579 -1.3793 9.7372 43 1 9.7794 -3.0482 4.3688 44 1 8.0081 -3.0424 4.6324 45 1 4.3997 -1.3885 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959866247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:13 Heat of formation + Delta-G solvation = 160.461297 kcal Electronic energy + Delta-G solvation = -28304.713144 eV Core-core repulsion = 24327.051674 eV Total energy + Delta-G solvation = -3977.661469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45613 -40.69759 -39.31745 -37.90044 -34.32227 -33.50083 -32.59964 -31.78618 -30.61327 -29.62121 -28.55428 -27.06456 -26.53641 -25.62091 -23.37740 -21.99794 -21.45951 -20.91118 -20.31088 -19.64765 -19.22159 -19.01952 -18.62296 -16.80667 -16.57419 -16.16198 -15.92696 -15.43820 -14.86443 -14.65926 -14.39996 -14.11266 -13.88547 -13.83379 -13.63785 -13.32481 -13.08603 -12.96416 -12.80755 -12.66967 -12.60389 -12.09576 -12.06043 -11.42367 -11.40560 -10.93493 -10.79924 -10.69754 -10.30338 -10.13098 -10.05464 -9.70674 -9.65215 -9.36005 -9.21733 -9.09618 -8.69492 -8.63784 -8.14035 -7.88689 -6.81148 -5.74868 -3.08897 1.65669 1.77713 2.22722 2.51852 2.96670 3.10753 3.37850 3.42880 3.46703 3.48701 3.68015 4.44943 4.46305 4.52592 4.68603 4.78025 4.88049 4.93885 4.96594 5.15855 5.22912 5.27640 5.37656 5.45095 5.49398 5.59283 5.66312 5.73158 5.77731 5.92491 5.99510 6.09908 6.26073 6.39839 6.52941 6.61893 6.66272 6.78040 6.79877 6.97395 6.98912 7.00862 7.19774 7.42436 7.59208 7.76287 7.78897 7.85217 8.25853 8.60894 9.15929 9.78610 10.56465 11.39540 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.002215 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.580346 B =12639.006269 C =13702.589985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.382 5.382 3 C 0.057 3.943 4 C -0.158 4.158 5 C -0.029 4.029 6 C -0.019 4.019 7 N -0.549 5.549 8 H 0.417 0.583 9 C 0.043 3.957 10 C -0.211 4.211 11 C 0.586 3.414 12 O -0.531 6.531 13 N -0.699 5.699 14 C 0.102 3.898 15 H 0.131 0.869 16 C -0.182 4.182 17 H 0.101 0.899 18 C 0.185 3.815 19 N -0.594 5.594 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.155 3.845 29 C -0.183 4.183 30 H 0.101 0.899 31 C 0.100 3.900 32 N -0.305 5.305 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.393 0.607 40 H 0.090 0.910 41 H 0.025 0.975 42 H 0.254 0.746 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.585 14.217 -23.544 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.164 5.164 3 C -0.090 4.090 4 C -0.171 4.171 5 C -0.037 4.037 6 C -0.148 4.148 7 N -0.143 5.143 8 H 0.254 0.746 9 C -0.093 4.093 10 C -0.222 4.222 11 C 0.374 3.626 12 O -0.408 6.408 13 N -0.348 5.348 14 C -0.004 4.004 15 H 0.149 0.851 16 C -0.203 4.203 17 H 0.119 0.881 18 C 0.059 3.941 19 N -0.317 5.317 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.029 3.971 29 C -0.205 4.205 30 H 0.119 0.881 31 C -0.087 4.087 32 N -0.125 5.125 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.187 0.813 37 H 0.186 0.814 38 H 0.189 0.811 39 H 0.226 0.774 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.108 12.653 -23.173 29.046 hybrid contribution 1.863 1.385 0.450 2.364 sum -10.246 14.038 -22.723 28.607 Atomic orbital electron populations 1.21778 0.74558 1.04392 1.02922 1.48313 1.06424 1.03885 1.57772 1.22392 0.90607 0.93031 1.02935 1.17993 0.90441 0.92564 1.16053 1.18246 0.92960 0.96258 0.96206 1.21738 0.89471 0.99697 1.03868 1.41393 1.16946 1.28070 1.27869 0.74612 1.21867 0.99494 0.95222 0.92670 1.20461 0.97718 1.01510 1.02470 1.17318 0.81275 0.83431 0.80529 1.90799 1.42631 1.37970 1.69356 1.45229 1.20882 1.34315 1.34325 1.21773 0.95179 0.94196 0.89209 0.85136 1.24604 1.03010 0.98694 0.94011 0.88097 1.21053 0.93348 0.88269 0.91421 1.45181 1.48228 1.31056 1.07260 1.19000 1.07155 1.23273 0.85894 0.90541 1.24906 0.97646 1.01071 0.96770 1.69902 1.27323 1.43832 1.15101 0.86106 0.80586 0.78210 0.80784 1.21579 1.21684 1.20549 1.21131 0.98335 0.91761 0.85892 1.24338 0.97121 0.97720 1.01296 0.88099 1.23854 0.94542 0.94164 0.96172 1.77297 1.01937 1.07776 1.25519 0.91099 0.89381 0.89768 0.81257 0.81374 0.81136 0.77353 0.89178 0.95660 0.93578 0.93098 0.95426 0.80242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.71 11.46 59.85 0.69 1.39 16 2 N -0.38 -4.43 4.01 -67.87 -0.27 -4.70 16 3 C 0.06 0.60 11.45 -16.84 -0.19 0.41 16 4 C -0.16 -2.04 5.48 -105.35 -0.58 -2.62 16 5 C -0.03 -0.33 6.18 -102.91 -0.64 -0.97 16 6 C -0.02 -0.15 11.87 -16.44 -0.20 -0.34 16 7 N -0.55 -3.16 5.89 -12.61 -0.07 -3.24 16 8 H 0.42 0.88 8.96 -40.82 -0.37 0.51 16 9 C 0.04 0.34 11.38 -16.88 -0.19 0.15 16 10 C -0.21 -2.55 6.30 -103.16 -0.65 -3.20 16 11 C 0.59 9.08 7.80 -12.66 -0.10 8.98 16 12 O -0.53 -10.28 14.13 5.24 0.07 -10.21 16 13 N -0.70 -9.90 5.55 -54.98 -0.31 -10.21 16 14 C 0.10 1.81 5.98 -67.93 -0.41 1.40 16 15 H 0.13 2.66 7.40 -51.93 -0.38 2.27 16 16 C -0.18 -3.51 7.05 -89.29 -0.63 -4.14 16 17 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 18 C 0.19 4.57 5.70 -2.41 -0.01 4.55 16 19 N -0.59 -15.57 3.38 -168.83 -0.57 -16.14 16 20 C -0.23 -6.36 10.35 -15.06 -0.16 -6.52 16 21 H 0.08 2.09 7.84 -52.49 -0.41 1.67 16 22 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 23 N -0.92 -27.23 10.86 55.49 0.60 -26.63 16 24 Si 0.91 22.19 29.56 -169.99 -5.03 17.16 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.16 3.40 7.04 -2.38 -0.02 3.38 16 29 C -0.18 -3.36 7.05 -89.27 -0.63 -3.99 16 30 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 31 C 0.10 1.48 10.38 -17.06 -0.18 1.30 16 32 N -0.30 -4.58 12.54 30.80 0.39 -4.19 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.17 0.83 7.44 -52.49 -0.39 0.44 16 39 H 0.39 4.26 7.76 -40.82 -0.32 3.95 16 40 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 45 H 0.18 2.68 7.82 -52.49 -0.41 2.27 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -38.04 381.45 -9.40 -47.44 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.98 Total: 5.48 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.98 Total: -0.50 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.23 Total: -65.11 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.04 -9.40 -47.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959866247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.900 kcal (2) G-P(sol) polarization free energy of solvation -38.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds