Wall clock time and date at job start Sat Apr 11 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39893 * 125.74809 * 2 1 4 4 C 1.30289 * 109.23875 * 180.02562 * 3 2 1 5 5 C 1.41482 * 108.18491 * 359.97438 * 4 3 2 6 6 C 1.46774 * 126.51980 * 179.97438 * 5 4 3 7 7 O 1.21689 * 120.00262 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99697 * 0.02562 * 6 5 4 9 9 C 1.46497 * 119.99827 * 180.02562 * 8 6 5 10 10 H 1.08994 * 110.88501 * 31.48302 * 9 8 6 11 11 C 1.54352 * 110.81949 * 267.96900 * 9 8 6 12 12 C 1.51369 * 105.16766 * 215.43131 * 11 9 8 13 13 C 1.38495 * 130.38924 * 197.17074 * 12 11 9 14 14 C 1.38108 * 120.21969 * 180.02562 * 13 12 11 15 15 C 1.38251 * 119.92883 * 0.02562 * 14 13 12 16 16 C 1.38100 * 119.93750 * 359.97438 * 15 14 13 17 17 C 1.38216 * 109.76366 * 17.18829 * 12 11 9 18 18 C 1.51371 * 109.75693 * 0.02562 * 17 12 11 19 19 H 1.08996 * 110.30405 * 101.83487 * 18 17 12 20 20 N 1.46499 * 110.30327 * 223.89039 * 18 17 12 21 21 C 1.36931 * 120.00122 * 273.54472 * 20 18 17 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48497 * 109.47173 * 179.72427 * 25 23 21 27 27 H 1.48506 * 109.46866 * 299.71963 * 25 23 21 28 28 H 1.48501 * 109.47438 * 59.72083 * 25 23 21 29 29 C 1.34848 * 125.74884 * 180.29678 * 2 1 3 30 30 N 1.38008 * 126.44848 * 359.97438 * 29 2 1 31 31 H 1.08996 * 109.46992 * 89.98114 * 1 2 3 32 32 H 1.09006 * 109.46902 * 209.97909 * 1 2 3 33 33 H 1.08996 * 109.47261 * 329.97693 * 1 2 3 34 34 H 1.07988 * 125.90719 * 179.97438 * 4 3 2 35 35 H 0.97005 * 119.99645 * 0.02562 * 8 6 5 36 36 H 1.08999 * 110.30413 * 96.50629 * 11 9 8 37 37 H 1.09002 * 110.30413 * 334.34807 * 11 9 8 38 38 H 1.08005 * 119.89056 * 0.02562 * 13 12 11 39 39 H 1.08002 * 120.03413 * 179.97438 * 14 13 12 40 40 H 1.08006 * 120.02887 * 180.02562 * 15 14 13 41 41 H 1.08000 * 119.88916 * 180.02562 * 16 15 14 42 42 H 0.97001 * 119.99790 * 93.53989 * 20 18 17 43 43 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 44 44 H 0.96993 * 120.00465 * 180.16770 * 30 29 2 45 45 H 0.97002 * 119.99765 * 0.16741 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1354 0.0000 4 6 3.5314 0.7651 -0.0006 5 6 3.5728 -0.6491 -0.0003 6 6 4.7774 -1.4877 -0.0013 7 8 4.6747 -2.7002 -0.0015 8 7 5.9973 -0.9147 -0.0020 9 6 7.1997 -1.7517 -0.0036 10 1 7.0219 -2.6861 -0.5358 11 6 7.6804 -2.0240 1.4377 12 6 9.1915 -2.0469 1.3534 13 6 10.1322 -2.5470 2.2384 14 6 11.4790 -2.4547 1.9469 15 6 11.8905 -1.8608 0.7682 16 6 10.9540 -1.3616 -0.1155 17 6 9.6030 -1.4538 0.1748 18 6 8.3965 -0.9911 -0.6136 19 1 8.2609 0.0845 -0.5009 20 7 8.5503 -1.3378 -2.0286 21 6 9.2155 -0.4895 -2.8730 22 1 9.6272 0.4349 -2.4957 23 6 9.3609 -0.8178 -4.2139 24 7 8.8596 -1.9447 -4.6736 25 14 10.2751 0.3357 -5.3640 26 1 10.2968 -0.2432 -6.7313 27 1 9.5876 1.6517 -5.3946 28 1 11.6676 0.5158 -4.8806 29 6 2.2528 -1.0944 -0.0057 30 7 1.8308 -2.4084 -0.0120 31 1 -0.3633 0.0003 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 4.3872 1.4238 -0.0011 35 1 6.0791 0.0519 -0.0015 36 1 7.3063 -2.9868 1.7856 37 1 7.3508 -1.2263 2.1034 38 1 9.8115 -3.0107 3.1596 39 1 12.2100 -2.8453 2.6394 40 1 12.9433 -1.7881 0.5384 41 1 11.2763 -0.8981 -1.0363 42 1 8.1810 -2.1683 -2.3674 43 1 8.9615 -2.1742 -5.6106 44 1 2.4823 -3.1270 -0.0133 45 1 0.8827 -2.6133 -0.0151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960257311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:17 Heat of formation + Delta-G solvation = 85.194879 kcal Electronic energy + Delta-G solvation = -29123.804152 eV Core-core repulsion = 25142.878886 eV Total energy + Delta-G solvation = -3980.925266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.36143 -39.91109 -38.48879 -35.99773 -35.03710 -33.83402 -33.22239 -32.48112 -31.12445 -29.63728 -28.96600 -27.76334 -26.81609 -25.93377 -23.25073 -22.80438 -21.77646 -20.85202 -20.42731 -20.19137 -19.73397 -18.07075 -17.22691 -16.89072 -16.18132 -15.92289 -15.87465 -15.43591 -15.09435 -14.72024 -14.48585 -14.33642 -13.98210 -13.77454 -13.35793 -13.21959 -13.06635 -12.99020 -12.89847 -12.76078 -12.42622 -12.32423 -11.96924 -11.60525 -11.35516 -11.01300 -10.91982 -10.85843 -10.76523 -10.51437 -10.33345 -10.11534 -9.71532 -9.55727 -9.12638 -8.99091 -8.65460 -8.24925 -8.01277 -7.86662 -7.01548 -5.77777 -3.07640 1.82449 1.87242 1.96141 2.11381 2.28626 3.43118 3.47818 3.49008 3.54717 3.61156 3.79700 4.29179 4.29878 4.58314 4.78970 4.84865 4.91013 5.06691 5.16997 5.19804 5.36958 5.42790 5.46731 5.53652 5.57619 5.62055 5.68947 5.81634 5.94913 6.03870 6.18744 6.22273 6.26698 6.32622 6.49801 6.51615 6.56395 6.71819 6.88897 7.00627 7.09358 7.19937 7.30171 7.32006 7.56214 7.67465 7.72707 7.98122 8.38576 8.68414 9.50428 10.04599 10.40213 11.43906 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009086 B = 0.003563 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.795009 B = 7857.113158 C =10082.408817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.404 5.404 3 N -0.309 5.309 4 C 0.116 3.884 5 C -0.366 4.366 6 C 0.607 3.393 7 O -0.571 6.571 8 N -0.708 5.708 9 C 0.146 3.854 10 H 0.104 0.896 11 C -0.087 4.087 12 C -0.105 4.105 13 C -0.117 4.117 14 C -0.132 4.132 15 C -0.130 4.130 16 C -0.080 4.080 17 C -0.091 4.091 18 C 0.206 3.794 19 H 0.067 0.933 20 N -0.710 5.710 21 C -0.244 4.244 22 H 0.071 0.929 23 C -0.007 4.007 24 N -0.927 5.927 25 Si 0.905 3.095 26 H -0.292 1.292 27 H -0.285 1.285 28 H -0.285 1.285 29 C 0.432 3.568 30 N -0.830 5.830 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.189 0.811 35 H 0.398 0.602 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.432 0.568 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 1.648 14.473 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.193 5.193 3 N -0.128 5.128 4 C -0.074 4.074 5 C -0.385 4.385 6 C 0.397 3.603 7 O -0.452 6.452 8 N -0.356 5.356 9 C 0.040 3.960 10 H 0.122 0.878 11 C -0.125 4.125 12 C -0.106 4.106 13 C -0.135 4.135 14 C -0.151 4.151 15 C -0.148 4.148 16 C -0.098 4.098 17 C -0.095 4.095 18 C 0.095 3.905 19 H 0.084 0.916 20 N -0.350 5.350 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.204 4.204 24 N -0.574 5.574 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.212 1.212 28 H -0.212 1.212 29 C 0.198 3.802 30 N -0.381 5.381 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.206 0.794 35 H 0.233 0.767 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.222 0.778 43 H 0.066 0.934 44 H 0.269 0.731 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.302 1.956 14.312 19.637 hybrid contribution 0.909 -0.308 -0.889 1.308 sum -12.393 1.648 13.423 18.343 Atomic orbital electron populations 1.21772 0.74453 1.04305 1.03330 1.48143 1.06295 1.02446 1.62381 1.77112 1.01831 1.05257 1.28565 1.23802 0.95200 0.93545 0.94825 1.19318 0.90930 0.93645 1.34655 1.16882 0.82126 0.86637 0.74652 1.90660 1.86898 1.14314 1.53281 1.45502 1.04801 1.09885 1.75423 1.21823 0.83936 0.95510 0.94752 0.87822 1.21363 0.91166 1.02309 0.97694 1.20470 0.94968 0.99670 0.95526 1.20456 0.92553 1.01406 0.99059 1.20862 0.95248 1.01340 0.97624 1.21036 0.99088 0.99921 0.94804 1.20797 0.91877 0.98302 0.98859 1.21691 0.95852 0.97330 0.94598 1.19968 0.88048 0.97006 0.85480 0.91559 1.42399 1.66463 1.24610 1.01499 1.19138 1.28221 1.00466 0.89630 0.91115 1.24740 1.01148 0.97389 0.97088 1.69665 1.49777 1.23371 1.14575 0.86316 0.79672 0.80099 0.80360 1.21745 1.21217 1.21209 1.18047 0.89518 0.81874 0.90807 1.41788 1.11104 1.02805 1.82354 0.90816 0.90235 0.88817 0.79405 0.76719 0.90867 0.90328 0.87204 0.86870 0.86713 0.85464 0.77809 0.93382 0.73077 0.77443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.24 59.84 0.67 1.32 16 2 N -0.40 -4.52 4.00 -66.82 -0.27 -4.78 16 3 N -0.31 -4.04 12.47 30.87 0.38 -3.66 16 4 C 0.12 1.47 11.49 -16.97 -0.20 1.28 16 5 C -0.37 -5.20 6.15 -104.81 -0.64 -5.85 16 6 C 0.61 9.88 7.79 -12.81 -0.10 9.78 16 7 O -0.57 -10.58 14.79 5.20 0.08 -10.51 16 8 N -0.71 -10.82 5.13 -53.70 -0.28 -11.09 16 9 C 0.15 2.52 3.12 -66.51 -0.21 2.31 16 10 H 0.10 2.09 7.21 -51.93 -0.37 1.72 16 11 C -0.09 -1.32 6.49 -26.85 -0.17 -1.50 16 12 C -0.11 -1.76 6.14 -104.21 -0.64 -2.40 16 13 C -0.12 -1.76 10.04 -39.53 -0.40 -2.16 16 14 C -0.13 -1.96 10.05 -39.62 -0.40 -2.35 16 15 C -0.13 -2.11 10.05 -39.63 -0.40 -2.51 16 16 C -0.08 -1.52 9.89 -39.54 -0.39 -1.91 16 17 C -0.09 -1.72 5.78 -104.21 -0.60 -2.32 16 18 C 0.21 4.01 3.22 -68.04 -0.22 3.79 16 19 H 0.07 1.25 7.77 -51.93 -0.40 0.85 16 20 N -0.71 -17.20 5.16 -53.53 -0.28 -17.48 16 21 C -0.24 -6.44 9.37 -15.06 -0.14 -6.58 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 25 Si 0.90 21.96 29.55 -169.99 -5.02 16.93 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.43 5.36 7.98 -153.78 -1.23 4.14 16 30 N -0.83 -8.05 9.02 31.40 0.28 -7.76 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.29 7.47 -51.93 -0.39 -0.10 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.19 1.81 7.49 -52.49 -0.39 1.42 16 35 H 0.40 5.19 7.37 -40.82 -0.30 4.89 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 41 H 0.13 2.60 7.58 -52.49 -0.40 2.21 16 42 H 0.39 10.36 7.58 -40.82 -0.31 10.05 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.43 4.86 7.01 -40.82 -0.29 4.57 16 45 H 0.40 2.37 8.05 -40.82 -0.33 2.04 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -34.32 379.16 -9.50 -43.82 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -5.68 Total: 21.00 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -5.16 Total: -5.25 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: 0.57 Total: -71.71 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.32 -9.50 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960257311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.015 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds