Wall clock time and date at job start Sat Apr 11 2020 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39915 * 125.75432 * 2 1 4 4 C 1.30360 * 109.14361 * 179.97438 * 3 2 1 5 5 C 1.41370 * 108.16599 * 0.02562 * 4 3 2 6 6 C 1.47007 * 126.48683 * 180.02562 * 5 4 3 7 7 O 1.21655 * 120.00586 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99992 * 0.02562 * 6 5 4 9 9 C 1.46500 * 120.00144 * 180.02562 * 8 6 5 10 10 H 1.09008 * 115.51534 * 350.58504 * 9 8 6 11 11 C 1.53001 * 117.44421 * 205.16467 * 9 8 6 12 12 H 1.09001 * 119.53817 * 5.76377 * 11 9 8 13 13 C 1.54392 * 118.12002 * 160.85189 * 11 9 8 14 14 N 1.48144 * 104.61594 * 87.19307 * 13 11 9 15 15 C 1.36939 * 127.83596 * 140.41022 * 14 13 11 16 16 H 1.07997 * 120.00311 * 195.57194 * 15 14 13 17 17 C 1.38816 * 119.99955 * 15.57527 * 15 14 13 18 18 N 1.31621 * 120.00039 * 9.09362 * 17 15 14 19 19 Si 1.86801 * 119.99828 * 189.09663 * 17 15 14 20 20 H 1.48495 * 109.47087 * 59.99952 * 19 17 15 21 21 H 1.48498 * 109.47018 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47141 * 299.99903 * 19 17 15 23 23 C 1.48143 * 104.32575 * 320.41465 * 14 13 11 24 24 C 1.53002 * 117.40668 * 135.93636 * 9 8 6 25 25 H 1.08997 * 119.54100 * 355.90374 * 24 9 8 26 26 C 1.34739 * 125.76294 * 180.31469 * 2 1 3 27 27 N 1.38993 * 126.40879 * 0.03302 * 26 2 1 28 28 C 1.36729 * 125.69189 * 134.84416 * 27 26 2 29 29 C 1.34792 * 108.18517 * 179.86452 * 28 27 26 30 30 C 1.41019 * 107.50338 * 0.38845 * 29 28 27 31 31 C 1.34786 * 107.50370 * 359.75953 * 30 29 28 32 32 H 1.09002 * 109.46913 * 89.98245 * 1 2 3 33 33 H 1.09004 * 109.47235 * 209.97445 * 1 2 3 34 34 H 1.08992 * 109.47623 * 329.97950 * 1 2 3 35 35 H 1.08002 * 125.91753 * 179.97438 * 4 3 2 36 36 H 0.97001 * 119.99932 * 0.02562 * 8 6 5 37 37 H 1.09003 * 110.40400 * 205.97978 * 13 11 9 38 38 H 1.08994 * 110.40815 * 328.40637 * 13 11 9 39 39 H 0.96999 * 119.99726 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.40827 * 158.37068 * 23 14 13 41 41 H 1.09001 * 110.40280 * 280.80174 * 23 14 13 42 42 H 1.08003 * 125.90687 * 359.97438 * 28 27 26 43 43 H 1.08000 * 126.24379 * 180.10774 * 29 28 27 44 44 H 1.07997 * 126.24772 * 179.73137 * 30 29 28 45 45 H 1.08003 * 125.90143 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1354 0.0000 4 6 3.5317 0.7628 0.0006 5 6 3.5701 -0.6504 0.0003 6 6 4.7753 -1.4921 0.0013 7 8 4.6708 -2.7042 0.0005 8 7 5.9961 -0.9211 0.0031 9 6 7.1972 -1.7599 0.0035 10 1 7.0263 -2.8246 0.1632 11 6 8.4784 -1.1567 0.5827 12 1 8.4438 -0.1761 1.0575 13 6 9.6076 -2.1192 1.0097 14 7 10.4019 -2.3335 -0.2223 15 6 11.7634 -2.4217 -0.3391 16 1 12.2294 -2.3281 -1.3089 17 6 12.5447 -2.6314 0.7890 18 7 11.9751 -2.9234 1.9390 19 14 14.4046 -2.4992 0.6747 20 1 14.7772 -1.1325 0.2293 21 1 15.0025 -2.7650 2.0078 22 1 14.9124 -3.4943 -0.3035 23 6 9.3892 -2.4306 -1.2991 24 6 8.3344 -1.3621 -0.9396 25 1 8.1979 -0.5233 -1.6222 26 6 2.2524 -1.0933 -0.0060 27 7 1.8269 -2.4165 -0.0139 28 6 2.3285 -3.4110 -0.8068 29 6 1.6646 -4.5496 -0.5242 30 6 0.7127 -4.2493 0.4720 31 6 0.8328 -2.9393 0.7658 32 1 -0.3633 0.0003 -1.0277 33 1 -0.3634 -0.8902 0.5134 34 1 -0.3634 0.8897 0.5141 35 1 4.3889 1.4198 0.0003 36 1 6.0795 0.0453 0.0041 37 1 10.2234 -1.6625 1.7845 38 1 9.1901 -3.0625 1.3617 39 1 12.5211 -3.0696 2.7273 40 1 9.8404 -2.2090 -2.2663 41 1 8.9376 -3.4226 -1.3077 42 1 3.1209 -3.3034 -1.5327 43 1 1.8285 -5.5144 -0.9808 44 1 0.0145 -4.9423 0.9176 45 1 0.2451 -2.3966 1.4914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961434568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:21 Heat of formation + Delta-G solvation = 178.022726 kcal Electronic energy + Delta-G solvation = -28831.000970 eV Core-core repulsion = 24854.101021 eV Total energy + Delta-G solvation = -3976.899949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46375 -40.77473 -39.54944 -38.12915 -34.55603 -34.11121 -33.00562 -32.56345 -30.35421 -29.19216 -28.95458 -27.63583 -27.13063 -25.62391 -23.56511 -22.31612 -21.88942 -20.81001 -20.43674 -20.31996 -19.64992 -19.27389 -18.60009 -17.13360 -16.85861 -16.39319 -16.18025 -15.52558 -14.96059 -14.72368 -14.59245 -14.43999 -14.37445 -14.05234 -13.64523 -13.46203 -13.20055 -13.16621 -13.04169 -12.73278 -12.51477 -12.26680 -12.16968 -11.55306 -11.49170 -11.45702 -10.97913 -10.80713 -10.37910 -10.32776 -10.20833 -10.14774 -9.87687 -9.71765 -9.43678 -9.17968 -8.73841 -8.66199 -8.36079 -8.26846 -6.85566 -5.78482 -3.12748 0.70472 1.45277 1.73621 2.13957 2.62739 2.88327 3.14721 3.27310 3.40081 3.44323 3.45597 3.88431 4.34980 4.41494 4.48318 4.48771 4.56574 4.62648 4.85001 4.88097 5.04462 5.13409 5.18751 5.35040 5.38736 5.40254 5.42510 5.57911 5.82115 5.86179 5.92519 6.00647 6.04450 6.07474 6.17549 6.25950 6.54692 6.68351 6.71356 6.82135 6.84306 6.91828 7.04389 7.15359 7.36624 7.54330 7.60637 7.72447 8.21838 8.30699 9.12049 9.74836 10.51957 11.35835 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.002261 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.318362 B =12383.006933 C =13177.289392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.364 5.364 3 N -0.275 5.275 4 C 0.096 3.904 5 C -0.283 4.283 6 C 0.593 3.407 7 O -0.534 6.534 8 N -0.690 5.690 9 C 0.100 3.900 10 H 0.133 0.867 11 C -0.180 4.180 12 H 0.103 0.897 13 C 0.185 3.815 14 N -0.593 5.593 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.915 5.915 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.156 3.844 24 C -0.182 4.182 25 H 0.102 0.898 26 C 0.361 3.639 27 N -0.393 5.393 28 C 0.064 3.936 29 C -0.204 4.204 30 C -0.167 4.167 31 C -0.040 4.040 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.200 0.800 36 H 0.397 0.603 37 H 0.091 0.909 38 H 0.026 0.974 39 H 0.255 0.745 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.170 0.830 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.238 6.463 -3.867 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.146 5.146 3 N -0.095 5.095 4 C -0.091 4.091 5 C -0.299 4.299 6 C 0.380 3.620 7 O -0.411 6.411 8 N -0.338 5.338 9 C -0.006 4.006 10 H 0.150 0.850 11 C -0.201 4.201 12 H 0.121 0.879 13 C 0.059 3.941 14 N -0.316 5.316 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.561 5.561 19 Si 0.743 3.257 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.029 3.971 24 C -0.204 4.204 25 H 0.120 0.880 26 C 0.138 3.862 27 N -0.072 5.072 28 C -0.062 4.062 29 C -0.228 4.228 30 C -0.192 4.192 31 C -0.164 4.164 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.216 0.784 36 H 0.231 0.769 37 H 0.109 0.891 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.187 0.813 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -26.938 6.830 -3.710 28.036 hybrid contribution 1.461 0.136 0.116 1.472 sum -25.476 6.966 -3.594 26.655 Atomic orbital electron populations 1.22178 0.73155 1.05385 1.04495 1.48621 1.07337 1.02396 1.56258 1.77292 1.01956 1.05045 1.25203 1.24002 0.95508 0.93264 0.96370 1.19924 0.91644 0.94025 1.24336 1.16918 0.81887 0.87018 0.76219 1.90839 1.86356 1.13530 1.50423 1.45090 1.04598 1.09612 1.74493 1.21832 0.79340 0.95772 1.03643 0.84981 1.24654 0.96346 1.02334 0.96772 0.87910 1.21064 0.88256 0.93953 0.90842 1.45164 1.01111 1.83371 1.01978 1.18944 0.79521 1.42825 0.94273 0.90582 1.24904 0.98284 1.00837 0.96243 1.69888 1.34082 1.52258 0.99896 0.86186 0.84812 0.77951 0.76721 1.21113 1.21558 1.20965 1.21114 0.88786 0.94135 0.93063 1.24375 0.99164 1.02995 0.93851 0.87950 1.17867 0.89412 0.80360 0.98561 1.40583 1.30593 1.03222 1.32777 1.22040 1.00130 0.86056 0.97993 1.20997 1.00639 0.98036 1.03089 1.20995 1.02439 0.94441 1.01340 1.21829 0.96862 0.95664 1.02026 0.89829 0.88878 0.88157 0.78368 0.76947 0.89083 0.95619 0.93477 0.93032 0.95449 0.81309 0.83759 0.83976 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.31 59.84 0.68 1.16 16 2 N -0.36 -3.51 3.99 -66.66 -0.27 -3.77 16 3 N -0.28 -2.83 12.48 30.86 0.39 -2.45 16 4 C 0.10 0.92 11.49 -16.99 -0.20 0.72 16 5 C -0.28 -3.42 6.13 -104.87 -0.64 -4.06 16 6 C 0.59 8.55 7.78 -12.71 -0.10 8.45 16 7 O -0.53 -9.38 12.91 5.23 0.07 -9.31 16 8 N -0.69 -9.17 5.55 -55.01 -0.31 -9.48 16 9 C 0.10 1.66 5.98 -67.93 -0.41 1.25 16 10 H 0.13 2.52 7.40 -51.92 -0.38 2.13 16 11 C -0.18 -3.34 7.06 -89.22 -0.63 -3.97 16 12 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 13 C 0.18 4.44 5.70 -2.41 -0.01 4.42 16 14 N -0.59 -15.17 3.38 -168.86 -0.57 -15.74 16 15 C -0.23 -6.32 10.35 -15.06 -0.16 -6.48 16 16 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 17 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 18 N -0.92 -26.82 10.86 55.49 0.60 -26.22 16 19 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.16 3.28 7.04 -2.41 -0.02 3.26 16 24 C -0.18 -3.20 7.06 -89.22 -0.63 -3.83 16 25 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 26 C 0.36 4.22 7.11 -153.04 -1.09 3.13 16 27 N -0.39 -4.62 2.79 -62.22 -0.17 -4.80 16 28 C 0.06 0.81 8.94 -16.59 -0.15 0.66 16 29 C -0.20 -2.32 10.86 -39.75 -0.43 -2.75 16 30 C -0.17 -1.67 10.86 -39.75 -0.43 -2.10 16 31 C -0.04 -0.40 9.93 -16.59 -0.16 -0.56 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.40 5.41 -51.93 -0.28 0.12 16 34 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.20 1.17 7.50 -52.49 -0.39 0.78 16 36 H 0.40 4.03 7.77 -40.82 -0.32 3.72 16 37 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.17 2.21 7.15 -52.48 -0.38 1.84 16 43 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 44 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 45 H 0.16 1.12 6.91 -52.48 -0.36 0.75 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -34.47 373.75 -9.93 -44.40 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.80 Total: 5.80 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -4.47 Total: -0.93 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.33 Total: -62.46 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.47 -9.93 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961434568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.418 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds