Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36932 * 120.00377 * 2 1 4 4 H 1.08001 * 120.00336 * 142.36701 * 3 2 1 5 5 C 1.38819 * 119.99932 * 322.37644 * 3 2 1 6 6 N 1.31612 * 119.99649 * 157.79705 * 5 3 2 7 7 Si 1.86797 * 119.99691 * 337.79257 * 5 3 2 8 8 H 1.48498 * 109.47343 * 95.35630 * 7 5 3 9 9 H 1.48502 * 109.46878 * 215.35625 * 7 5 3 10 10 H 1.48505 * 109.47162 * 335.35595 * 7 5 3 11 11 C 1.46501 * 119.99770 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.64325 * 176.86111 * 11 2 1 13 13 C 1.55159 * 110.72223 * 300.00265 * 11 2 1 14 14 C 1.54907 * 101.58501 * 153.86663 * 13 11 2 15 15 N 1.47429 * 104.82852 * 322.99165 * 14 13 11 16 16 C 1.34781 * 125.64298 * 203.86477 * 15 14 13 17 17 O 1.21575 * 120.00139 * 355.16203 * 16 15 14 18 18 C 1.47670 * 119.99844 * 175.16844 * 16 15 14 19 19 C 1.40226 * 120.49793 * 187.67694 * 18 16 15 20 20 C 1.38030 * 118.35866 * 179.97438 * 19 18 16 21 21 C 1.39160 * 119.25248 * 359.97438 * 20 19 18 22 22 N 1.39490 * 119.52857 * 180.02562 * 21 20 19 23 23 C 1.35917 * 126.10643 * 179.97438 * 22 21 20 24 24 C 1.35245 * 107.60443 * 179.97438 * 23 22 21 25 25 C 1.40006 * 107.96955 * 0.02562 * 24 23 22 26 26 N 1.30787 * 108.37919 * 359.73950 * 25 24 23 27 27 N 1.32445 * 120.93877 * 359.97438 * 21 20 19 28 28 C 1.31622 * 121.80513 * 359.76830 * 27 21 20 29 29 C 1.47016 * 108.70279 * 24.12692 * 15 14 13 30 30 H 1.08992 * 109.47016 * 272.67451 * 1 2 3 31 31 H 1.08995 * 109.46860 * 32.67875 * 1 2 3 32 32 H 1.08997 * 109.47208 * 152.67623 * 1 2 3 33 33 H 0.97002 * 119.99388 * 180.02562 * 6 5 3 34 34 H 1.09003 * 111.00319 * 35.79064 * 13 11 2 35 35 H 1.08998 * 111.03555 * 271.95504 * 13 11 2 36 36 H 1.09001 * 110.36781 * 204.15114 * 14 13 11 37 37 H 1.08995 * 110.46118 * 81.87389 * 14 13 11 38 38 H 1.08003 * 120.81766 * 359.94476 * 19 18 16 39 39 H 1.07989 * 120.37190 * 180.02562 * 20 19 18 40 40 H 1.07998 * 126.19651 * 0.02562 * 23 22 21 41 41 H 1.08001 * 126.01152 * 179.97438 * 24 23 22 42 42 H 1.08006 * 125.80587 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.67912 * 180.26610 * 28 27 21 44 44 H 1.09005 * 109.88166 * 118.36276 * 29 15 14 45 45 H 1.09003 * 109.88252 * 239.52204 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.0613 1.2831 0.5711 5 6 1.6723 2.2630 -0.7339 6 7 2.0371 3.4876 -0.4185 7 14 0.5120 1.9744 -2.1691 8 1 -0.8916 2.1298 -1.7099 9 1 0.7946 2.9630 -3.2406 10 1 0.7106 0.6009 -2.6978 11 6 2.1975 -1.2688 0.0006 12 1 3.2717 -1.0924 -0.0554 13 6 1.8435 -2.1065 1.2577 14 6 2.1171 -3.5472 0.7586 15 7 1.6777 -3.5488 -0.6487 16 6 1.2989 -4.6344 -1.3520 17 8 1.3852 -5.7408 -0.8556 18 6 0.7791 -4.4798 -2.7255 19 6 0.2335 -5.5768 -3.4076 20 6 -0.2400 -5.3823 -4.6894 21 6 -0.1617 -4.1147 -5.2583 22 7 -0.6389 -3.9116 -6.5532 23 6 -0.6295 -2.7359 -7.2350 24 6 -1.1785 -2.9632 -8.4500 25 6 -1.5356 -4.3153 -8.5164 26 7 -1.2086 -4.8843 -7.3851 27 7 0.3586 -3.0982 -4.5873 28 6 0.8170 -3.2382 -3.3615 29 6 1.7274 -2.1712 -1.1596 30 1 -0.3633 0.0479 1.0265 31 1 -0.3633 0.8650 -0.5548 32 1 -0.3633 -0.9130 -0.4717 33 1 1.7032 4.2403 -0.9311 34 1 0.7956 -1.9795 1.5294 35 1 2.4953 -1.8522 2.0935 36 1 1.5374 -4.2658 1.3379 37 1 3.1804 -3.7777 0.8243 38 1 0.1853 -6.5499 -2.9415 39 1 -0.6671 -6.2044 -5.2443 40 1 -0.2513 -1.7914 -6.8726 41 1 -1.3178 -2.2304 -9.2310 42 1 -1.9977 -4.8061 -9.3603 43 1 1.2304 -2.3848 -2.8444 44 1 2.4333 -2.1082 -1.9878 45 1 0.7358 -1.8627 -1.4908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972047341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = 138.251746 kcal Electronic energy + Delta-G solvation = -29465.396072 eV Core-core repulsion = 25486.771524 eV Total energy + Delta-G solvation = -3978.624548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.73629 -41.86920 -40.46945 -39.06340 -36.64894 -34.98042 -33.91707 -33.73646 -32.39901 -31.38836 -30.56840 -29.59663 -28.10804 -26.51079 -25.41629 -24.89609 -23.71594 -22.23099 -21.95140 -21.15995 -21.09596 -19.49803 -19.05569 -18.77083 -17.84917 -17.56327 -16.96889 -16.71754 -16.63688 -16.38358 -15.79105 -15.51913 -15.17782 -14.99254 -14.79894 -14.63023 -14.55216 -14.46623 -14.33878 -14.30867 -14.00530 -13.76283 -13.45037 -13.33950 -13.13820 -12.53293 -12.36998 -12.21870 -12.04899 -12.01387 -11.67668 -11.61336 -11.58702 -11.30085 -11.24715 -10.84738 -10.62823 -10.34227 -9.82032 -9.47149 -8.79406 -8.19674 -5.60455 -0.90601 -0.10384 0.73504 0.94466 1.33374 1.45185 1.53606 1.66731 1.74916 1.76154 2.42523 2.54751 2.97693 3.04582 3.10075 3.28776 3.40383 3.53522 3.65907 3.73030 3.85678 3.96513 4.00557 4.15691 4.26742 4.30029 4.35305 4.40194 4.48985 4.56514 4.58632 4.68392 4.74776 4.79028 4.82847 4.90343 4.97504 5.01022 5.08018 5.13133 5.23973 5.35712 5.52300 5.85791 5.92857 6.17207 6.20611 6.27801 6.64265 6.88127 6.94984 7.59548 8.01218 8.99241 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.003907 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.464914 B = 7165.006522 C = 9770.630148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.605 5.605 3 C -0.260 4.260 4 H 0.051 0.949 5 C -0.014 4.014 6 N -0.945 5.945 7 Si 0.939 3.061 8 H -0.282 1.282 9 H -0.313 1.313 10 H -0.248 1.248 11 C 0.165 3.835 12 H 0.091 0.909 13 C -0.138 4.138 14 C 0.113 3.887 15 N -0.604 5.604 16 C 0.583 3.417 17 O -0.566 6.566 18 C -0.209 4.209 19 C 0.014 3.986 20 C -0.172 4.172 21 C 0.380 3.620 22 N -0.347 5.347 23 C 0.054 3.946 24 C -0.251 4.251 25 C 0.076 3.924 26 N -0.314 5.314 27 N -0.526 5.526 28 C 0.134 3.866 29 C 0.065 3.935 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.186 0.814 41 H 0.188 0.812 42 H 0.235 0.765 43 H 0.202 0.798 44 H 0.088 0.912 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 -17.494 -12.002 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.327 5.327 3 C -0.389 4.389 4 H 0.069 0.931 5 C -0.212 4.212 6 N -0.589 5.589 7 Si 0.768 3.232 8 H -0.210 1.210 9 H -0.242 1.242 10 H -0.171 1.171 11 C 0.057 3.943 12 H 0.109 0.891 13 C -0.178 4.178 14 C -0.008 4.008 15 N -0.336 5.336 16 C 0.372 3.628 17 O -0.447 6.447 18 C -0.215 4.215 19 C -0.012 4.012 20 C -0.194 4.194 21 C 0.152 3.848 22 N -0.125 5.125 23 C -0.085 4.085 24 C -0.279 4.279 25 C -0.113 4.113 26 N -0.132 5.132 27 N -0.239 5.239 28 C -0.024 4.024 29 C -0.060 4.060 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.189 0.811 39 H 0.185 0.815 40 H 0.203 0.797 41 H 0.205 0.795 42 H 0.251 0.749 43 H 0.217 0.783 44 H 0.106 0.894 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.954 -18.212 -11.480 22.336 hybrid contribution -0.461 0.783 -0.698 1.145 sum -6.416 -17.429 -12.177 22.209 Atomic orbital electron populations 1.21384 0.83923 0.99218 0.99337 1.44046 1.01093 1.01376 1.86225 1.18666 1.08707 0.88249 1.23292 0.93096 1.26055 1.00356 0.94904 0.99857 1.69983 1.48955 0.98884 1.41033 0.85960 0.78459 0.78411 0.80373 1.21004 1.24152 1.17110 1.21675 0.96859 0.83942 0.91833 0.89099 1.23220 1.02917 0.92705 0.98927 1.22342 1.00803 0.97846 0.79854 1.48362 1.64425 1.06750 1.14043 1.17602 0.77358 0.83073 0.84736 1.90754 1.57327 1.25068 1.71569 1.20873 1.07923 0.96313 0.96434 1.21777 0.88422 0.99311 0.91675 1.21677 1.04540 0.96831 0.96399 1.18294 0.92140 0.90968 0.83414 1.45938 1.47912 1.08420 1.10194 1.23384 1.00030 0.91650 0.93453 1.22135 1.08920 0.98160 0.98651 1.24968 0.96308 0.94069 0.95977 1.77430 1.18618 1.13454 1.03730 1.67064 1.14286 1.32596 1.09970 1.24653 0.91373 0.98124 0.88202 1.23243 1.01963 0.81187 0.99565 0.95310 0.95737 0.92102 0.92800 0.90950 0.88743 0.90041 0.89753 0.81059 0.81459 0.79720 0.79520 0.74938 0.78261 0.89382 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.99 8.43 127.77 1.08 5.07 16 2 N -0.60 -24.76 2.49 -696.17 -1.73 -26.49 16 3 C -0.26 -13.35 9.86 84.04 0.83 -12.53 16 4 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 5 C -0.01 -0.79 5.32 84.86 0.45 -0.34 16 6 N -0.95 -56.28 13.97 21.65 0.30 -55.98 16 7 Si 0.94 43.23 25.04 68.60 1.72 44.94 16 8 H -0.28 -12.69 6.67 99.48 0.66 -12.03 16 9 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 10 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 11 C 0.16 5.25 3.45 46.18 0.16 5.41 16 12 H 0.09 2.95 7.95 -2.39 -0.02 2.94 16 13 C -0.14 -3.59 6.66 31.99 0.21 -3.38 16 14 C 0.11 2.69 6.89 86.85 0.60 3.29 16 15 N -0.60 -16.15 3.33 -824.82 -2.74 -18.89 16 16 C 0.58 16.67 7.81 86.73 0.68 17.35 16 17 O -0.57 -18.63 16.74 -3.95 -0.07 -18.70 16 18 C -0.21 -5.49 5.89 -19.99 -0.12 -5.60 16 19 C 0.01 0.33 9.70 22.70 0.22 0.55 16 20 C -0.17 -3.92 9.68 22.44 0.22 -3.70 16 21 C 0.38 10.08 7.55 132.89 1.00 11.09 16 22 N -0.35 -8.62 3.80 -192.18 -0.73 -9.35 16 23 C 0.05 1.16 11.09 83.37 0.92 2.08 16 24 C -0.25 -3.84 10.80 22.01 0.24 -3.60 16 25 C 0.08 1.13 12.02 85.28 1.02 2.15 16 26 N -0.31 -6.92 11.81 -56.96 -0.67 -7.59 16 27 N -0.53 -15.01 9.83 -191.84 -1.88 -16.90 16 28 C 0.13 3.67 9.78 85.04 0.83 4.50 16 29 C 0.06 1.81 4.42 86.73 0.38 2.19 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.02 1.03 3.14 -2.39 -0.01 1.02 16 32 H 0.06 1.95 6.12 -2.39 -0.01 1.94 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.07 1.96 7.34 -2.39 -0.02 1.94 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.08 1.90 8.09 -2.39 -0.02 1.88 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.17 3.30 7.75 -2.91 -0.02 3.28 16 39 H 0.17 3.27 7.67 -2.92 -0.02 3.24 16 40 H 0.19 3.73 8.05 -2.91 -0.02 3.70 16 41 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.20 5.46 2.77 -6.54 -0.02 5.44 16 44 H 0.09 2.33 6.82 -2.38 -0.02 2.31 16 45 H 0.08 2.29 4.50 -2.39 -0.01 2.28 16 Total: -1.00 -69.23 364.31 3.90 -65.32 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.99 Total: 19.10 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 8.73 Total: 24.53 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -7.46 Total: -135.20 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.07 Total: -18.70 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.72 Total: 44.94 kcal Total: -69.23 3.90 -65.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972047341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.574 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds