Wall clock time and date at job start Sat Apr 11 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 120.00111 * 2 1 4 4 H 1.07998 * 120.00123 * 159.50345 * 3 2 1 5 5 C 1.38811 * 119.99650 * 339.22877 * 3 2 1 6 6 N 1.31623 * 120.00007 * 346.78647 * 5 3 2 7 7 Si 1.86802 * 119.99858 * 166.79199 * 5 3 2 8 8 H 1.48497 * 109.46894 * 94.97260 * 7 5 3 9 9 H 1.48501 * 109.46817 * 214.97055 * 7 5 3 10 10 H 1.48498 * 109.47095 * 334.97481 * 7 5 3 11 11 C 1.46503 * 120.00289 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.88956 * 177.57359 * 11 2 1 13 13 C 1.55151 * 111.00656 * 53.64432 * 11 2 1 14 14 C 1.54323 * 102.94669 * 206.42719 * 13 11 2 15 15 N 1.47023 * 107.26966 * 22.19784 * 14 13 11 16 16 C 1.34772 * 125.65238 * 181.10137 * 15 14 13 17 17 O 1.21568 * 120.00357 * 185.42442 * 16 15 14 18 18 C 1.47670 * 119.99502 * 5.41461 * 16 15 14 19 19 C 1.40219 * 120.50125 * 351.69716 * 18 16 15 20 20 C 1.38032 * 118.35907 * 179.79795 * 19 18 16 21 21 C 1.39150 * 119.25307 * 0.45781 * 20 19 18 22 22 N 1.39492 * 119.53150 * 179.76662 * 21 20 19 23 23 C 1.35916 * 126.11022 * 180.02562 * 22 21 20 24 24 C 1.35242 * 107.60728 * 179.97438 * 23 22 21 25 25 C 1.40007 * 107.97364 * 0.02562 * 24 23 22 26 26 N 1.30797 * 108.37215 * 359.74020 * 25 24 23 27 27 N 1.32445 * 120.94225 * 359.77895 * 21 20 19 28 28 C 1.31618 * 121.80020 * 359.97438 * 27 21 20 29 29 C 1.47433 * 108.70226 * 1.05518 * 15 14 13 30 30 H 1.09003 * 109.46988 * 84.00265 * 1 2 3 31 31 H 1.09007 * 109.47341 * 203.99660 * 1 2 3 32 32 H 1.08994 * 109.47420 * 324.00072 * 1 2 3 33 33 H 0.97000 * 119.99720 * 179.97438 * 6 5 3 34 34 H 1.09002 * 110.72110 * 324.79327 * 13 11 2 35 35 H 1.09006 * 110.72020 * 88.06664 * 13 11 2 36 36 H 1.09000 * 109.88340 * 262.78015 * 14 13 11 37 37 H 1.08999 * 109.88442 * 141.60918 * 14 13 11 38 38 H 1.08009 * 120.81830 * 359.97438 * 19 18 16 39 39 H 1.07997 * 120.37092 * 180.24285 * 20 19 18 40 40 H 1.07997 * 126.19324 * 0.02562 * 23 22 21 41 41 H 1.08004 * 126.01427 * 179.97438 * 24 23 22 42 42 H 1.07991 * 125.81393 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.68062 * 180.02562 * 28 27 21 44 44 H 1.09001 * 110.36489 * 217.03500 * 29 15 14 45 45 H 1.08995 * 110.45523 * 94.75855 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1784 1.2156 0.3275 5 6 1.5232 2.3490 -0.4263 6 7 0.3765 2.2813 -1.0688 7 14 2.3078 4.0102 -0.0883 8 1 3.1071 4.4292 -1.2676 9 1 1.2461 5.0152 0.1724 10 1 3.1940 3.9067 1.0988 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0965 -0.0436 13 6 1.7321 -2.1792 -1.1674 14 6 2.0381 -3.5977 -0.6424 15 7 2.0991 -3.5165 0.8243 16 6 2.3656 -4.5418 1.6574 17 8 2.2935 -4.3821 2.8604 18 6 2.7449 -5.8594 1.1089 19 6 2.6640 -6.1066 -0.2690 20 6 3.0335 -7.3525 -0.7343 21 6 3.4615 -8.3175 0.1723 22 7 3.8317 -9.5801 -0.2911 23 6 4.2669 -10.6174 0.4717 24 6 4.5198 -11.6563 -0.3564 25 6 4.2327 -11.2463 -1.6640 26 7 3.8164 -10.0070 -1.6254 27 7 3.5222 -8.0545 1.4689 28 6 3.1840 -6.8789 1.9547 29 6 1.8216 -2.1273 1.2328 30 1 -0.3633 0.1074 -1.0221 31 1 -0.3634 -0.9389 0.4180 32 1 -0.3634 0.8313 0.6040 33 1 -0.0614 3.0940 -1.3664 34 1 0.6643 -2.0573 -1.3494 35 1 2.3047 -1.9707 -2.0713 36 1 2.9957 -3.9397 -1.0349 37 1 1.2457 -4.2832 -0.9430 38 1 2.3236 -5.3402 -0.9497 39 1 2.9877 -7.5769 -1.7897 40 1 4.3880 -10.6130 1.5449 41 1 4.8805 -12.6306 -0.0612 42 1 4.3331 -11.8518 -2.5525 43 1 3.2471 -6.7015 3.0182 44 1 2.4388 -1.8531 2.0884 45 1 0.7655 -2.0046 1.4728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972047343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:04 Heat of formation + Delta-G solvation = 133.202674 kcal Electronic energy + Delta-G solvation = -28528.242784 eV Core-core repulsion = 24549.399292 eV Total energy + Delta-G solvation = -3978.843492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.67221 -41.77956 -40.43191 -38.89581 -36.73409 -34.92712 -34.03244 -33.26631 -31.64644 -31.32517 -30.65311 -29.45771 -28.06485 -26.38194 -25.27368 -24.71061 -23.93235 -22.17107 -21.87759 -21.19363 -20.93598 -19.47994 -18.96110 -18.43207 -17.69691 -17.42476 -16.92566 -16.69579 -16.43288 -16.12213 -15.74680 -15.34817 -15.30184 -14.99915 -14.80592 -14.61001 -14.50883 -14.31735 -14.17717 -14.08676 -13.71491 -13.62599 -13.41698 -12.88483 -12.80267 -12.42756 -12.25366 -12.13659 -12.10301 -11.94747 -11.79719 -11.60046 -11.48171 -11.35343 -11.15618 -10.80859 -10.63920 -10.28772 -9.81445 -9.39174 -8.81541 -7.83538 -5.30498 -0.83596 -0.03296 0.79949 0.99795 1.46861 1.49409 1.58029 1.71230 1.79053 1.81435 2.51141 2.62042 3.05064 3.23940 3.33127 3.35332 3.48684 3.65497 3.74205 3.86606 3.93277 4.03918 4.10816 4.13840 4.26601 4.35046 4.43125 4.55082 4.57570 4.64674 4.72685 4.74752 4.81119 4.87213 4.97267 5.01793 5.07132 5.21417 5.23338 5.31597 5.42449 5.56704 5.64418 5.74502 5.93248 6.21557 6.30658 6.39683 6.69799 6.93598 7.14006 7.84604 8.26812 9.19193 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.002017 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.986778 B =13880.217368 C =14356.064104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.601 5.601 3 C -0.264 4.264 4 H 0.072 0.928 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.285 1.285 9 H -0.295 1.295 10 H -0.273 1.273 11 C 0.166 3.834 12 H 0.077 0.923 13 C -0.143 4.143 14 C 0.091 3.909 15 N -0.604 5.604 16 C 0.577 3.423 17 O -0.577 6.577 18 C -0.203 4.203 19 C -0.037 4.037 20 C -0.172 4.172 21 C 0.378 3.622 22 N -0.346 5.346 23 C 0.058 3.942 24 C -0.253 4.253 25 C 0.072 3.928 26 N -0.316 5.316 27 N -0.521 5.521 28 C 0.194 3.806 29 C 0.097 3.903 30 H 0.013 0.987 31 H 0.029 0.971 32 H 0.012 0.988 33 H 0.248 0.752 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.200 0.800 39 H 0.167 0.833 40 H 0.192 0.808 41 H 0.187 0.813 42 H 0.230 0.770 43 H 0.183 0.817 44 H 0.058 0.942 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -27.897 -2.458 28.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.323 5.323 3 C -0.394 4.394 4 H 0.090 0.910 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.212 1.212 9 H -0.222 1.222 10 H -0.198 1.198 11 C 0.056 3.944 12 H 0.095 0.905 13 C -0.183 4.183 14 C -0.031 4.031 15 N -0.336 5.336 16 C 0.367 3.633 17 O -0.459 6.459 18 C -0.210 4.210 19 C -0.062 4.062 20 C -0.194 4.194 21 C 0.150 3.850 22 N -0.125 5.125 23 C -0.082 4.082 24 C -0.281 4.281 25 C -0.117 4.117 26 N -0.134 5.134 27 N -0.234 5.234 28 C 0.034 3.966 29 C -0.028 4.028 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.217 0.783 39 H 0.184 0.816 40 H 0.209 0.791 41 H 0.205 0.795 42 H 0.247 0.753 43 H 0.200 0.800 44 H 0.077 0.923 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.642 -27.330 -1.929 28.191 hybrid contribution 0.062 1.272 0.355 1.322 sum 6.703 -26.057 -1.574 26.952 Atomic orbital electron populations 1.20525 0.82506 0.95589 0.98062 1.43980 1.02094 1.00844 1.85340 1.19542 0.97251 0.86158 1.36488 0.90976 1.25687 0.98412 1.01503 0.98928 1.70226 1.19153 1.27216 1.41487 0.85276 0.77289 0.80026 0.77950 1.21160 1.22165 1.19770 1.21545 0.95991 0.84794 0.92025 0.90473 1.23139 1.02612 0.92977 0.99561 1.22798 1.03302 0.98482 0.78497 1.48322 1.68195 1.08717 1.08355 1.17852 0.76865 0.83378 0.85154 1.90770 1.55195 1.84029 1.15875 1.20723 1.09112 0.95256 0.95866 1.23319 0.90727 0.97436 0.94745 1.21755 1.02993 0.92515 1.02096 1.18278 0.93025 0.83928 0.89725 1.45943 1.51593 1.08613 1.06305 1.23415 0.97566 0.87078 1.00105 1.22137 1.12135 1.01969 0.91858 1.24947 0.94450 0.91769 1.00501 1.77462 1.25843 1.15941 0.94165 1.67006 1.20441 1.23168 1.12796 1.22793 0.88325 0.84602 1.00885 1.22720 1.00468 0.80140 0.99435 0.96827 0.95254 0.96889 0.94247 0.91150 0.89095 0.87769 0.87843 0.78343 0.81572 0.79059 0.79529 0.75341 0.80018 0.92316 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.35 7.59 127.77 0.97 9.32 16 2 N -0.60 -28.24 2.96 -695.03 -2.06 -30.30 16 3 C -0.26 -13.91 9.64 84.03 0.81 -13.10 16 4 H 0.07 3.69 7.84 -2.91 -0.02 3.67 16 5 C -0.05 -2.71 5.11 84.86 0.43 -2.28 16 6 N -0.93 -53.37 10.58 21.65 0.23 -53.14 16 7 Si 0.97 44.14 29.57 68.60 2.03 46.16 16 8 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 9 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 C 0.17 6.03 3.54 46.38 0.16 6.20 16 12 H 0.08 2.84 7.94 -2.39 -0.02 2.82 16 13 C -0.14 -4.00 6.51 31.78 0.21 -3.79 16 14 C 0.09 1.86 4.87 86.73 0.42 2.28 16 15 N -0.60 -16.92 3.33 -817.53 -2.72 -19.64 16 16 C 0.58 16.95 7.80 86.74 0.68 17.63 16 17 O -0.58 -21.19 16.69 -3.93 -0.07 -21.26 16 18 C -0.20 -4.68 5.89 -19.99 -0.12 -4.80 16 19 C -0.04 -0.66 8.66 22.70 0.20 -0.47 16 20 C -0.17 -3.17 9.68 22.44 0.22 -2.95 16 21 C 0.38 8.23 7.55 132.89 1.00 9.23 16 22 N -0.35 -7.06 3.80 -192.19 -0.73 -7.79 16 23 C 0.06 0.92 11.09 83.37 0.92 1.84 16 24 C -0.25 -2.80 10.80 22.01 0.24 -2.56 16 25 C 0.07 0.86 12.02 85.28 1.02 1.88 16 26 N -0.32 -5.95 11.81 -56.96 -0.67 -6.62 16 27 N -0.52 -11.75 9.83 -191.84 -1.88 -13.63 16 28 C 0.19 4.41 10.76 85.04 0.91 5.32 16 29 C 0.10 3.35 6.44 86.86 0.56 3.91 16 30 H 0.01 0.69 7.34 -2.39 -0.02 0.67 16 31 H 0.03 1.18 6.33 -2.38 -0.02 1.16 16 32 H 0.01 0.66 7.25 -2.39 -0.02 0.64 16 33 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 34 H 0.07 2.14 7.07 -2.39 -0.02 2.12 16 35 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.10 1.60 6.67 -2.39 -0.02 1.59 16 37 H 0.10 1.58 6.80 -2.39 -0.02 1.56 16 38 H 0.20 2.60 2.94 -3.74 -0.01 2.59 16 39 H 0.17 2.63 7.67 -2.91 -0.02 2.61 16 40 H 0.19 2.48 8.05 -2.91 -0.02 2.46 16 41 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 42 H 0.23 0.75 8.06 -2.92 -0.02 0.73 16 43 H 0.18 3.92 7.67 -2.91 -0.02 3.90 16 44 H 0.06 2.20 8.09 -2.39 -0.02 2.18 16 45 H 0.06 2.21 6.34 -2.39 -0.02 2.20 16 Total: -1.00 -71.55 368.40 3.80 -67.75 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.03 Total: 10.79 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 8.64 Total: 27.66 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -7.84 Total: -131.11 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.07 Total: -21.26 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -71.55 3.80 -67.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972047343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.957 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds