Wall clock time and date at job start Sat Apr 11 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 120.00305 * 2 1 4 4 H 1.07995 * 120.00180 * 207.86324 * 3 2 1 5 5 C 1.38807 * 119.99699 * 27.86644 * 3 2 1 6 6 N 1.31627 * 120.00014 * 8.96492 * 5 3 2 7 7 Si 1.86802 * 120.00051 * 188.96835 * 5 3 2 8 8 H 1.48501 * 109.46959 * 89.99689 * 7 5 3 9 9 H 1.48498 * 109.47089 * 209.99856 * 7 5 3 10 10 H 1.48499 * 109.46716 * 329.99652 * 7 5 3 11 11 C 1.46505 * 119.99887 * 180.27890 * 2 1 3 12 12 H 1.08997 * 110.88498 * 176.11919 * 11 2 1 13 13 C 1.55159 * 111.00423 * 299.99778 * 11 2 1 14 14 C 1.54320 * 102.94263 * 153.57597 * 13 11 2 15 15 N 1.47025 * 107.27122 * 337.80631 * 14 13 11 16 16 C 1.34779 * 125.64639 * 178.95946 * 15 14 13 17 17 O 1.21584 * 119.99505 * 184.32528 * 16 15 14 18 18 C 1.47593 * 120.00043 * 4.32897 * 16 15 14 19 19 C 1.39966 * 120.59735 * 309.43015 * 18 16 15 20 20 C 1.38350 * 118.34940 * 179.78123 * 19 18 16 21 21 C 1.38393 * 119.45270 * 0.47273 * 20 19 18 22 22 N 1.31841 * 121.17980 * 359.76983 * 21 20 19 23 23 C 1.32259 * 121.80628 * 359.97438 * 22 21 20 24 24 N 1.39348 * 119.80040 * 179.97438 * 23 22 21 25 25 C 1.35937 * 126.10881 * 333.01883 * 24 23 22 26 26 C 1.35236 * 107.60612 * 179.97438 * 25 24 23 27 27 C 1.40013 * 107.96825 * 0.02562 * 26 25 24 28 28 N 1.30786 * 108.38178 * 359.70833 * 27 26 25 29 29 C 1.47426 * 108.70227 * 358.94023 * 15 14 13 30 30 H 1.09000 * 109.46639 * 265.33293 * 1 2 3 31 31 H 1.08994 * 109.46782 * 25.32390 * 1 2 3 32 32 H 1.08992 * 109.47021 * 145.32795 * 1 2 3 33 33 H 0.97002 * 119.99655 * 180.02562 * 6 5 3 34 34 H 1.08995 * 110.72014 * 271.94160 * 13 11 2 35 35 H 1.09004 * 110.71964 * 35.03054 * 13 11 2 36 36 H 1.08995 * 109.88468 * 97.22405 * 14 13 11 37 37 H 1.09004 * 109.88163 * 218.23567 * 14 13 11 38 38 H 1.08008 * 120.82641 * 0.02562 * 19 18 16 39 39 H 1.07997 * 120.27495 * 180.22540 * 20 19 18 40 40 H 1.08001 * 119.40909 * 179.74146 * 21 20 19 41 41 H 1.08000 * 126.20054 * 0.02562 * 25 24 23 42 42 H 1.07998 * 126.01568 * 180.02562 * 26 25 24 43 43 H 1.08008 * 125.80984 * 180.02562 * 27 26 25 44 44 H 1.08991 * 110.36852 * 265.28663 * 29 15 14 45 45 H 1.09002 * 110.36549 * 142.96681 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1358 1.2401 -0.4371 5 6 1.5765 2.3183 0.5619 6 7 0.4579 2.2181 1.2485 7 14 2.3923 3.9845 0.3436 8 1 1.8706 4.6338 -0.8859 9 1 2.0933 4.8399 1.5201 10 1 3.8614 3.8043 0.2231 11 6 2.1975 -1.2688 -0.0062 12 1 3.2717 -1.0970 -0.0743 13 6 1.8484 -2.1186 1.2442 14 6 2.1063 -3.5623 0.7639 15 7 2.0264 -3.5548 -0.7042 16 6 2.2133 -4.6215 -1.5065 17 8 2.2004 -4.4833 -2.7144 18 6 2.4336 -5.9573 -0.9188 19 6 3.4009 -6.1478 0.0748 20 6 3.5653 -7.4186 0.5965 21 6 2.7839 -8.4564 0.1194 22 7 1.8819 -8.2553 -0.8208 23 6 1.6810 -7.0598 -1.3498 24 7 0.7166 -6.8947 -2.3420 25 6 0.2879 -7.8496 -3.2093 26 6 -0.6492 -7.2875 -4.0060 27 6 -0.8003 -5.9506 -3.6184 28 7 0.0114 -5.7165 -2.6200 29 6 1.7074 -2.1873 -1.1532 30 1 -0.3632 -0.0836 1.0243 31 1 -0.3633 0.9289 -0.4396 32 1 -0.3633 -0.8451 -0.5846 33 1 0.0571 3.0095 1.6408 34 1 2.5043 -1.8663 2.0773 35 1 0.8035 -1.9829 1.5232 36 1 3.0980 -3.8864 1.0794 37 1 1.3498 -4.2306 1.1752 38 1 4.0013 -5.3225 0.4282 39 1 4.3001 -7.6000 1.3669 40 1 2.9157 -9.4490 0.5243 41 1 0.6325 -8.8722 -3.2535 42 1 -1.1865 -7.7827 -4.8013 43 1 -1.4761 -5.2359 -4.0643 44 1 0.6325 -2.0758 -1.2956 45 1 2.2390 -1.9575 -2.0767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972055166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:15 Heat of formation + Delta-G solvation = 119.349082 kcal Electronic energy + Delta-G solvation = -29804.471087 eV Core-core repulsion = 25825.026858 eV Total energy + Delta-G solvation = -3979.444229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.67386 -41.39918 -40.43235 -38.78596 -36.58431 -34.75476 -34.07429 -33.21526 -31.45465 -31.30313 -30.55419 -29.36553 -28.08680 -26.31551 -25.18340 -24.79074 -23.67975 -22.29670 -21.91474 -21.03879 -20.76176 -19.38002 -18.95658 -18.47545 -17.76661 -17.57015 -16.70684 -16.62514 -16.27797 -16.21269 -15.64363 -15.45199 -15.12762 -14.95714 -14.67760 -14.60747 -14.44457 -14.33142 -14.17286 -13.96940 -13.71884 -13.42821 -13.36951 -12.98542 -12.83869 -12.53793 -12.36940 -12.17041 -12.08280 -11.88192 -11.79692 -11.51921 -11.45067 -11.29455 -11.07069 -10.69633 -10.62734 -10.21815 -9.67141 -9.38409 -8.74715 -7.87327 -5.39041 -0.56142 -0.11234 1.03765 1.16287 1.47291 1.48849 1.56784 1.57931 1.83403 1.91546 2.49750 2.60246 3.16379 3.27884 3.33845 3.49090 3.52884 3.78236 3.88687 3.92691 3.96109 4.01525 4.15250 4.16244 4.26657 4.38451 4.42122 4.54399 4.60449 4.68446 4.72451 4.86497 4.88458 4.97484 4.99363 5.00418 5.16861 5.18734 5.29585 5.36095 5.38945 5.57472 5.61855 5.65612 6.04943 6.32987 6.36819 6.47601 6.76604 7.06955 7.12530 7.80238 8.27977 9.17736 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.002904 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.360715 B = 9639.451339 C =10667.744159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.600 5.600 3 C -0.271 4.271 4 H 0.070 0.930 5 C -0.043 4.043 6 N -0.934 5.934 7 Si 0.970 3.030 8 H -0.288 1.288 9 H -0.293 1.293 10 H -0.267 1.267 11 C 0.169 3.831 12 H 0.079 0.921 13 C -0.139 4.139 14 C 0.110 3.890 15 N -0.605 5.605 16 C 0.587 3.413 17 O -0.565 6.565 18 C -0.193 4.193 19 C -0.029 4.029 20 C -0.161 4.161 21 C 0.149 3.851 22 N -0.516 5.516 23 C 0.382 3.618 24 N -0.343 5.343 25 C 0.062 3.938 26 C -0.254 4.254 27 C 0.047 3.953 28 N -0.305 5.305 29 C 0.105 3.895 30 H 0.003 0.997 31 H 0.027 0.973 32 H 0.018 0.982 33 H 0.250 0.750 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.168 0.832 39 H 0.197 0.803 40 H 0.216 0.784 41 H 0.203 0.797 42 H 0.188 0.812 43 H 0.208 0.792 44 H 0.052 0.948 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -25.912 -0.310 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.321 5.321 3 C -0.401 4.401 4 H 0.088 0.912 5 C -0.239 4.239 6 N -0.579 5.579 7 Si 0.798 3.202 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.191 1.191 11 C 0.060 3.940 12 H 0.098 0.902 13 C -0.179 4.179 14 C -0.012 4.012 15 N -0.338 5.338 16 C 0.376 3.624 17 O -0.444 6.444 18 C -0.202 4.202 19 C -0.055 4.055 20 C -0.181 4.181 21 C -0.009 4.009 22 N -0.229 5.229 23 C 0.155 3.845 24 N -0.122 5.122 25 C -0.078 4.078 26 C -0.282 4.282 27 C -0.142 4.142 28 N -0.123 5.123 29 C -0.020 4.020 30 H 0.021 0.979 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.185 0.815 39 H 0.215 0.785 40 H 0.232 0.768 41 H 0.220 0.780 42 H 0.206 0.794 43 H 0.225 0.775 44 H 0.070 0.930 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.783 -25.596 -0.340 26.042 hybrid contribution -0.123 1.576 -0.610 1.695 sum 4.660 -24.020 -0.951 24.487 Atomic orbital electron populations 1.20486 0.83043 0.96584 0.96595 1.43890 1.01802 1.00879 1.85510 1.19520 1.01506 0.87548 1.31522 0.91238 1.25857 0.98553 1.02129 0.97391 1.70196 1.21466 1.28735 1.37510 0.85230 0.78642 0.79687 0.76615 1.21542 1.21898 1.19131 1.21533 0.95792 0.84679 0.91975 0.90249 1.23036 1.02210 0.93170 0.99506 1.22227 1.02862 0.97761 0.78375 1.48261 1.69083 1.08201 1.08282 1.17682 0.75912 0.83407 0.85415 1.90739 1.52425 1.85561 1.15655 1.20439 1.02644 0.93263 1.03805 1.22136 0.92964 1.00425 0.90024 1.22634 1.02061 0.91183 1.02217 1.23648 0.86978 1.02111 0.88151 1.67118 1.22047 1.20561 1.13213 1.17732 0.87951 0.90062 0.88791 1.45796 1.30988 1.09304 1.26117 1.23364 0.96793 0.96425 0.91222 1.22018 1.05106 0.94378 1.06725 1.24663 0.97177 0.98211 0.94178 1.77619 1.09881 1.03986 1.20805 1.22505 0.99639 0.81068 0.98792 0.97898 0.95412 0.96418 0.94084 0.89183 0.92400 0.88169 0.91281 0.81466 0.78550 0.76770 0.77994 0.79447 0.77534 0.92953 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.96 8.04 127.77 1.03 9.98 16 2 N -0.60 -29.96 2.95 -695.03 -2.05 -32.01 16 3 C -0.27 -14.74 9.57 84.03 0.80 -13.94 16 4 H 0.07 3.68 7.84 -2.91 -0.02 3.65 16 5 C -0.04 -2.40 5.11 84.86 0.43 -1.96 16 6 N -0.93 -54.48 10.86 21.65 0.24 -54.24 16 7 Si 0.97 44.59 29.56 68.60 2.03 46.61 16 8 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 9 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 C 0.17 6.82 3.55 46.38 0.16 6.99 16 12 H 0.08 3.16 7.96 -2.39 -0.02 3.14 16 13 C -0.14 -4.62 6.55 31.78 0.21 -4.41 16 14 C 0.11 2.92 5.84 86.73 0.51 3.42 16 15 N -0.61 -20.50 3.33 -815.48 -2.71 -23.21 16 16 C 0.59 20.92 6.02 86.71 0.52 21.44 16 17 O -0.56 -24.76 15.34 -3.98 -0.06 -24.82 16 18 C -0.19 -5.35 5.37 -19.90 -0.11 -5.45 16 19 C -0.03 -0.50 8.64 22.72 0.20 -0.30 16 20 C -0.16 -1.49 10.09 22.33 0.23 -1.27 16 21 C 0.15 1.70 11.17 84.73 0.95 2.64 16 22 N -0.52 -10.85 10.01 -191.97 -1.92 -12.78 16 23 C 0.38 10.73 7.39 133.27 0.99 11.71 16 24 N -0.34 -10.67 3.50 -191.54 -0.67 -11.34 16 25 C 0.06 1.49 11.21 83.36 0.93 2.42 16 26 C -0.25 -5.59 10.80 22.01 0.24 -5.36 16 27 C 0.05 1.29 12.02 85.28 1.02 2.32 16 28 N -0.31 -10.76 9.19 -56.95 -0.52 -11.29 16 29 C 0.10 4.15 6.48 86.85 0.56 4.71 16 30 H 0.00 0.15 7.58 -2.39 -0.02 0.13 16 31 H 0.03 1.52 6.91 -2.39 -0.02 1.50 16 32 H 0.02 0.81 5.93 -2.39 -0.01 0.79 16 33 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.06 2.15 7.18 -2.38 -0.02 2.14 16 36 H 0.10 1.91 6.05 -2.39 -0.01 1.89 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.17 2.16 6.33 -2.91 -0.02 2.14 16 39 H 0.20 0.00 8.06 -2.91 -0.02 -0.02 16 40 H 0.22 0.42 8.06 -2.91 -0.02 0.39 16 41 H 0.20 3.49 8.06 -2.91 -0.02 3.46 16 42 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 43 H 0.21 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.05 2.26 5.92 -2.39 -0.01 2.25 16 45 H 0.05 2.29 8.00 -2.39 -0.02 2.27 16 Total: -1.00 -81.68 368.45 4.02 -77.67 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.02 Total: 12.45 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 8.67 Total: 32.96 kcal Atomic # 7 Polarization: -137.23 SS G_CDS: -7.64 Total: -144.87 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.06 Total: -24.82 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -81.68 4.02 -77.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972055166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.015 kcal (2) G-P(sol) polarization free energy of solvation -81.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds