Wall clock time and date at job start Sat Apr 11 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 119.99979 * 2 1 4 4 H 1.08003 * 119.99828 * 154.67094 * 3 2 1 5 5 C 1.38807 * 120.00153 * 334.40322 * 3 2 1 6 6 N 1.31624 * 119.99618 * 354.45870 * 5 3 2 7 7 Si 1.86795 * 120.00168 * 174.46247 * 5 3 2 8 8 H 1.48500 * 109.47450 * 59.99733 * 7 5 3 9 9 H 1.48504 * 109.47256 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47145 * 299.99449 * 7 5 3 11 11 C 1.46501 * 120.00092 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64171 * 183.13679 * 11 2 1 13 13 C 1.55159 * 110.71867 * 59.99930 * 11 2 1 14 14 C 1.54910 * 101.58292 * 206.13380 * 13 11 2 15 15 N 1.47429 * 104.82918 * 37.00916 * 14 13 11 16 16 C 1.34779 * 125.64564 * 155.82694 * 15 14 13 17 17 O 1.21546 * 120.00052 * 354.24595 * 16 15 14 18 18 C 1.47863 * 119.99729 * 174.24406 * 16 15 14 19 19 C 1.39661 * 120.08789 * 7.14030 * 18 16 15 20 20 C 1.38014 * 120.09485 * 179.74622 * 19 18 16 21 21 C 1.38161 * 120.27415 * 0.55513 * 20 19 18 22 22 C 1.39415 * 120.17381 * 359.70331 * 21 20 19 23 23 C 1.48413 * 120.05156 * 180.02562 * 22 21 20 24 24 N 1.33974 * 125.65048 * 359.97438 * 23 22 21 25 25 C 1.30680 * 109.77743 * 179.97438 * 24 23 22 26 26 N 1.34516 * 108.29594 * 359.97438 * 25 24 23 27 27 H 0.97001 * 126.74221 * 179.97438 * 26 25 24 28 28 N 1.31489 * 125.64902 * 179.66617 * 23 22 21 29 29 C 1.39094 * 119.89440 * 0.02562 * 22 21 20 30 30 C 1.47014 * 108.70383 * 335.87203 * 15 14 13 31 31 H 1.09001 * 109.47407 * 94.54874 * 1 2 3 32 32 H 1.09007 * 109.46797 * 214.54852 * 1 2 3 33 33 H 1.08996 * 109.46940 * 334.54154 * 1 2 3 34 34 H 0.97003 * 119.99657 * 180.02562 * 6 5 3 35 35 H 1.09003 * 111.00400 * 324.20531 * 13 11 2 36 36 H 1.09000 * 111.00570 * 88.02210 * 13 11 2 37 37 H 1.09002 * 110.36948 * 155.84667 * 14 13 11 38 38 H 1.09005 * 110.36799 * 278.06127 * 14 13 11 39 39 H 1.07999 * 119.94546 * 0.02562 * 19 18 16 40 40 H 1.07996 * 119.86143 * 180.25726 * 20 19 18 41 41 H 1.08001 * 119.91852 * 179.71971 * 21 20 19 42 42 H 1.08003 * 125.85463 * 179.97438 * 25 24 23 43 43 H 1.08010 * 120.13106 * 180.02562 * 29 22 21 44 44 H 1.09001 * 109.88627 * 241.64189 * 30 15 14 45 45 H 1.09006 * 109.88473 * 120.48116 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1518 1.2308 0.4002 5 6 1.5578 2.3290 -0.5193 6 7 0.3841 2.2520 -1.1099 7 14 2.4272 3.9765 -0.3802 8 1 3.7383 3.9045 -1.0738 9 1 1.5923 5.0314 -1.0090 10 1 2.6423 4.3032 1.0523 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0923 0.0553 13 6 1.8436 -2.1064 -1.2578 14 6 2.1172 -3.5471 -0.7587 15 7 1.6778 -3.5488 0.6486 16 6 1.2934 -4.6335 1.3501 17 8 1.1903 -5.7104 0.7961 18 6 0.9972 -4.5134 2.7938 19 6 0.9696 -3.2558 3.4006 20 6 0.6880 -3.1432 4.7470 21 6 0.4433 -4.2725 5.5043 22 6 0.4733 -5.5339 4.9114 23 6 0.2096 -6.7452 5.7273 24 7 -0.0677 -6.7586 7.0380 25 6 -0.2462 -7.9893 7.4396 26 7 -0.0862 -8.8058 6.3827 27 1 -0.1592 -9.7731 6.3803 28 7 0.2037 -7.9825 5.2825 29 6 0.7509 -5.6553 3.5538 30 6 1.7274 -2.1712 1.1596 31 1 -0.3634 -0.0815 -1.0244 32 1 -0.3633 -0.8465 0.5828 33 1 -0.3633 0.9279 0.4417 34 1 -0.0294 3.0508 -1.4732 35 1 0.7956 -1.9795 -1.5295 36 1 2.4954 -1.8514 -2.0934 37 1 1.5375 -4.2658 -1.3380 38 1 3.1807 -3.7764 -0.8261 39 1 1.1644 -2.3700 2.8144 40 1 0.6635 -2.1685 5.2115 41 1 0.2280 -4.1780 6.5584 42 1 -0.4817 -8.2980 8.4474 43 1 0.7747 -6.6307 3.0904 44 1 2.4333 -2.1081 1.9877 45 1 0.7358 -1.8628 1.4909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972065173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:22 Heat of formation + Delta-G solvation = 139.843109 kcal Electronic energy + Delta-G solvation = -28839.240438 eV Core-core repulsion = 24860.684897 eV Total energy + Delta-G solvation = -3978.555541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.37348 -40.38295 -38.51520 -37.36569 -34.81406 -33.56771 -32.22606 -31.80521 -31.21873 -30.40582 -29.41032 -27.95958 -26.12483 -24.75722 -24.17242 -23.11597 -22.65659 -21.66674 -20.88449 -19.60787 -19.42065 -18.68380 -17.15066 -16.93550 -16.34889 -15.95973 -15.79316 -15.61617 -15.37905 -14.82704 -14.48807 -14.21041 -13.95804 -13.69804 -13.42271 -13.27735 -12.94058 -12.72657 -12.59093 -12.49738 -12.46082 -11.88293 -11.58718 -11.41384 -11.13399 -10.91762 -10.79834 -10.77126 -10.44727 -10.43141 -10.39051 -10.30818 -10.27457 -10.00607 -9.92768 -9.63672 -9.05037 -8.71006 -8.59404 -8.34251 -6.84230 -5.82974 -3.31798 0.61785 0.99948 1.49610 2.27954 2.57692 3.10860 3.14568 3.34202 3.40064 3.40296 3.66822 3.91235 4.25605 4.38624 4.53410 4.62363 4.89912 5.01810 5.11168 5.17769 5.26321 5.31442 5.42135 5.48050 5.55198 5.59355 5.74130 5.83228 5.84202 5.85574 5.95440 5.97696 6.15205 6.23704 6.31339 6.34846 6.37209 6.52518 6.60660 6.65348 6.76090 6.77446 6.85959 7.32410 7.64289 7.68002 7.73780 7.74233 8.31795 8.34129 9.14291 9.74540 10.24223 11.22859 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.002397 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.414192 B =11677.616490 C =12729.017500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.909 3.091 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.170 3.830 12 H 0.081 0.919 13 C -0.151 4.151 14 C 0.107 3.893 15 N -0.605 5.605 16 C 0.572 3.428 17 O -0.548 6.548 18 C -0.133 4.133 19 C -0.103 4.103 20 C -0.131 4.131 21 C -0.053 4.053 22 C -0.036 4.036 23 C 0.276 3.724 24 N -0.536 5.536 25 C 0.263 3.737 26 N -0.485 5.485 27 H 0.443 0.557 28 N -0.302 5.302 29 C -0.026 4.026 30 C 0.064 3.936 31 H 0.019 0.981 32 H -0.005 1.005 33 H 0.065 0.935 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.172 0.828 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.225 0.775 43 H 0.141 0.859 44 H 0.073 0.927 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -17.523 15.420 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.307 5.307 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.059 3.941 12 H 0.100 0.900 13 C -0.192 4.192 14 C -0.015 4.015 15 N -0.337 5.337 16 C 0.362 3.638 17 O -0.427 6.427 18 C -0.136 4.136 19 C -0.121 4.121 20 C -0.148 4.148 21 C -0.074 4.074 22 C -0.039 4.039 23 C -0.004 4.004 24 N -0.263 5.263 25 C -0.036 4.036 26 N -0.203 5.203 27 H 0.289 0.711 28 N -0.131 5.131 29 C -0.047 4.047 30 C -0.060 4.060 31 H 0.037 0.963 32 H 0.013 0.987 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.189 0.811 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.241 0.759 43 H 0.159 0.841 44 H 0.091 0.909 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.481 -17.859 14.567 23.052 hybrid contribution 0.192 0.060 0.347 0.401 sum -0.289 -17.799 14.914 23.224 Atomic orbital electron populations 1.20868 0.82388 0.97541 0.97833 1.43870 1.01876 0.99777 1.85167 1.19176 0.99736 0.85859 1.34307 0.91232 1.25122 0.97374 0.98904 0.97861 1.70040 1.16358 1.28093 1.40556 0.86283 0.78812 0.83308 0.77773 1.20876 1.21621 1.20911 1.21382 0.96494 0.86042 0.90150 0.90040 1.23386 1.03016 0.92533 1.00257 1.22276 0.99214 0.98943 0.81105 1.48317 1.64664 1.07346 1.13403 1.17859 0.77045 0.82957 0.85957 1.90743 1.53835 1.26990 1.71150 1.19770 1.06204 0.94023 0.93573 1.23210 0.93783 0.99072 0.96040 1.21173 1.00937 0.98833 0.93904 1.21409 0.94596 0.90736 1.00615 1.17280 1.06004 0.88983 0.91635 1.22281 0.97489 0.91490 0.89105 1.70510 1.23283 1.21251 1.11276 1.26104 0.96086 0.85748 0.95638 1.48137 1.54739 1.11006 1.06444 0.71123 1.78323 1.24905 1.01980 1.07901 1.21224 0.92823 0.99083 0.91599 1.23298 1.02062 0.81119 0.99536 0.96313 0.98727 0.91591 0.93498 0.90598 0.90279 0.90906 0.91642 0.81114 0.84528 0.84448 0.75881 0.84093 0.90865 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.62 7.95 59.85 0.48 4.10 16 2 N -0.59 -13.36 2.93 -171.39 -0.50 -13.86 16 3 C -0.26 -6.62 9.60 -15.06 -0.14 -6.76 16 4 H 0.07 1.70 7.82 -52.48 -0.41 1.29 16 5 C 0.01 0.16 5.19 -17.43 -0.09 0.07 16 6 N -0.91 -25.06 10.53 55.49 0.58 -24.48 16 7 Si 0.91 20.75 29.56 -169.99 -5.02 15.73 16 8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 C 0.17 3.12 3.45 -66.09 -0.23 2.90 16 12 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 13 C -0.15 -2.58 6.66 -24.58 -0.16 -2.75 16 14 C 0.11 1.67 6.94 -2.53 -0.02 1.65 16 15 N -0.60 -9.88 3.33 -176.19 -0.59 -10.47 16 16 C 0.57 9.91 7.81 -12.32 -0.10 9.81 16 17 O -0.55 -10.94 16.59 5.33 0.09 -10.85 16 18 C -0.13 -2.01 5.87 -105.01 -0.62 -2.63 16 19 C -0.10 -1.37 8.61 -39.13 -0.34 -1.71 16 20 C -0.13 -1.50 10.02 -39.69 -0.40 -1.89 16 21 C -0.05 -0.62 9.68 -39.17 -0.38 -1.00 16 22 C -0.04 -0.48 5.87 -104.95 -0.62 -1.10 16 23 C 0.28 3.56 7.77 -156.63 -1.22 2.34 16 24 N -0.54 -5.86 10.81 -12.38 -0.13 -6.00 16 25 C 0.26 1.73 13.11 -90.70 -1.19 0.54 16 26 N -0.48 -3.50 7.44 29.52 0.22 -3.28 16 27 H 0.44 1.40 8.96 -182.34 -1.63 -0.24 16 28 N -0.30 -3.72 12.42 32.10 0.40 -3.32 16 29 C -0.03 -0.39 9.22 -38.84 -0.36 -0.74 16 30 C 0.06 1.02 4.45 -3.07 -0.01 1.00 16 31 H 0.02 0.46 7.63 -51.93 -0.40 0.07 16 32 H -0.01 -0.11 6.05 -51.93 -0.31 -0.43 16 33 H 0.07 1.66 6.64 -51.93 -0.34 1.32 16 34 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.08 1.43 7.18 -51.93 -0.37 1.05 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.15 7.98 -51.93 -0.41 0.74 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.17 2.28 2.73 -58.40 -0.16 2.12 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.14 1.41 7.82 -52.49 -0.41 1.00 16 42 H 0.23 0.20 8.06 -52.48 -0.42 -0.22 16 43 H 0.14 2.19 7.44 -52.48 -0.39 1.80 16 44 H 0.07 1.05 6.74 -51.93 -0.35 0.70 16 45 H 0.09 1.43 4.49 -51.93 -0.23 1.20 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -33.78 367.26 -11.48 -45.26 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.67 Total: 1.91 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -5.39 Total: 3.82 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.02 Total: -61.40 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.78 -11.48 -45.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972065173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.099 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds