Wall clock time and date at job start Sat Apr 11 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 119.99979 * 2 1 4 4 H 1.08003 * 119.99828 * 154.67094 * 3 2 1 5 5 C 1.38807 * 120.00153 * 334.40322 * 3 2 1 6 6 N 1.31624 * 119.99618 * 354.45870 * 5 3 2 7 7 Si 1.86795 * 120.00168 * 174.46247 * 5 3 2 8 8 H 1.48500 * 109.47450 * 59.99733 * 7 5 3 9 9 H 1.48504 * 109.47256 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47145 * 299.99449 * 7 5 3 11 11 C 1.46501 * 120.00092 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64171 * 183.13679 * 11 2 1 13 13 C 1.55159 * 110.71867 * 59.99930 * 11 2 1 14 14 C 1.54910 * 101.58292 * 206.13380 * 13 11 2 15 15 N 1.47429 * 104.82918 * 37.00916 * 14 13 11 16 16 C 1.34779 * 125.64564 * 155.82694 * 15 14 13 17 17 O 1.21546 * 120.00052 * 354.24595 * 16 15 14 18 18 C 1.47863 * 119.99729 * 174.24406 * 16 15 14 19 19 C 1.39661 * 120.08789 * 7.14030 * 18 16 15 20 20 C 1.38014 * 120.09485 * 179.74622 * 19 18 16 21 21 C 1.38161 * 120.27415 * 0.55513 * 20 19 18 22 22 C 1.39415 * 120.17381 * 359.70331 * 21 20 19 23 23 C 1.48413 * 120.05156 * 180.02562 * 22 21 20 24 24 N 1.33974 * 125.65048 * 359.97438 * 23 22 21 25 25 C 1.30680 * 109.77743 * 179.97438 * 24 23 22 26 26 N 1.34516 * 108.29594 * 359.97438 * 25 24 23 27 27 H 0.97001 * 126.74221 * 179.97438 * 26 25 24 28 28 N 1.31489 * 125.64902 * 179.66617 * 23 22 21 29 29 C 1.39094 * 119.89440 * 0.02562 * 22 21 20 30 30 C 1.47014 * 108.70383 * 335.87203 * 15 14 13 31 31 H 1.09001 * 109.47407 * 94.54874 * 1 2 3 32 32 H 1.09007 * 109.46797 * 214.54852 * 1 2 3 33 33 H 1.08996 * 109.46940 * 334.54154 * 1 2 3 34 34 H 0.97003 * 119.99657 * 180.02562 * 6 5 3 35 35 H 1.09003 * 111.00400 * 324.20531 * 13 11 2 36 36 H 1.09000 * 111.00570 * 88.02210 * 13 11 2 37 37 H 1.09002 * 110.36948 * 155.84667 * 14 13 11 38 38 H 1.09005 * 110.36799 * 278.06127 * 14 13 11 39 39 H 1.07999 * 119.94546 * 0.02562 * 19 18 16 40 40 H 1.07996 * 119.86143 * 180.25726 * 20 19 18 41 41 H 1.08001 * 119.91852 * 179.71971 * 21 20 19 42 42 H 1.08003 * 125.85463 * 179.97438 * 25 24 23 43 43 H 1.08010 * 120.13106 * 180.02562 * 29 22 21 44 44 H 1.09001 * 109.88627 * 241.64189 * 30 15 14 45 45 H 1.09006 * 109.88473 * 120.48116 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1518 1.2308 0.4002 5 6 1.5578 2.3290 -0.5193 6 7 0.3841 2.2520 -1.1099 7 14 2.4272 3.9765 -0.3802 8 1 3.7383 3.9045 -1.0738 9 1 1.5923 5.0314 -1.0090 10 1 2.6423 4.3032 1.0523 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0923 0.0553 13 6 1.8436 -2.1064 -1.2578 14 6 2.1172 -3.5471 -0.7587 15 7 1.6778 -3.5488 0.6486 16 6 1.2934 -4.6335 1.3501 17 8 1.1903 -5.7104 0.7961 18 6 0.9972 -4.5134 2.7938 19 6 0.9696 -3.2558 3.4006 20 6 0.6880 -3.1432 4.7470 21 6 0.4433 -4.2725 5.5043 22 6 0.4733 -5.5339 4.9114 23 6 0.2096 -6.7452 5.7273 24 7 -0.0677 -6.7586 7.0380 25 6 -0.2462 -7.9893 7.4396 26 7 -0.0862 -8.8058 6.3827 27 1 -0.1592 -9.7731 6.3803 28 7 0.2037 -7.9825 5.2825 29 6 0.7509 -5.6553 3.5538 30 6 1.7274 -2.1712 1.1596 31 1 -0.3634 -0.0815 -1.0244 32 1 -0.3633 -0.8465 0.5828 33 1 -0.3633 0.9279 0.4417 34 1 -0.0294 3.0508 -1.4732 35 1 0.7956 -1.9795 -1.5295 36 1 2.4954 -1.8514 -2.0934 37 1 1.5375 -4.2658 -1.3380 38 1 3.1807 -3.7764 -0.8261 39 1 1.1644 -2.3700 2.8144 40 1 0.6635 -2.1685 5.2115 41 1 0.2280 -4.1780 6.5584 42 1 -0.4817 -8.2980 8.4474 43 1 0.7747 -6.6307 3.0904 44 1 2.4333 -2.1081 1.9877 45 1 0.7358 -1.8628 1.4909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972065173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:21 Heat of formation + Delta-G solvation = 119.657188 kcal Electronic energy + Delta-G solvation = -28840.115765 eV Core-core repulsion = 24860.684897 eV Total energy + Delta-G solvation = -3979.430868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.07536 -41.64496 -39.66864 -38.80249 -36.52125 -34.44482 -33.41113 -32.94433 -32.53022 -31.42787 -30.67140 -29.37766 -28.02149 -26.08596 -25.12617 -24.55071 -23.59558 -22.77708 -21.86321 -21.04775 -20.66655 -19.38787 -18.89096 -18.13816 -17.55761 -17.35148 -16.87112 -16.53619 -16.43696 -16.16916 -15.72859 -15.56277 -15.09913 -14.95750 -14.83357 -14.54544 -14.43629 -14.20078 -13.93935 -13.71371 -13.31293 -13.18107 -13.01688 -12.76963 -12.64439 -12.48617 -12.43668 -12.26702 -12.06967 -11.84221 -11.74191 -11.52754 -11.42809 -11.18086 -11.05859 -11.03248 -10.53969 -10.11317 -9.65913 -9.65265 -8.72008 -7.79862 -5.29479 -0.35315 -0.03906 0.81199 1.54475 1.55059 1.61386 1.63198 1.72633 1.86713 2.04089 2.55063 2.86390 2.95029 3.29347 3.36021 3.57696 3.69604 3.73821 3.91576 3.96561 4.04144 4.17204 4.23733 4.29179 4.31964 4.42167 4.48802 4.56086 4.66149 4.78873 4.88228 4.96308 4.97277 5.05988 5.10863 5.12380 5.22732 5.31707 5.35136 5.39006 5.41867 5.43066 5.69764 5.78629 5.79847 6.22646 6.36144 6.43167 6.98600 6.99702 7.19729 7.88196 8.33808 9.24759 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.002397 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.414192 B =11677.616490 C =12729.017500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.599 5.599 3 C -0.260 4.260 4 H 0.080 0.920 5 C -0.050 4.050 6 N -0.939 5.939 7 Si 0.969 3.031 8 H -0.277 1.277 9 H -0.301 1.301 10 H -0.275 1.275 11 C 0.163 3.837 12 H 0.090 0.910 13 C -0.142 4.142 14 C 0.112 3.888 15 N -0.605 5.605 16 C 0.569 3.431 17 O -0.583 6.583 18 C -0.148 4.148 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.044 4.044 22 C -0.041 4.041 23 C 0.256 3.744 24 N -0.565 5.565 25 C 0.283 3.717 26 N -0.473 5.473 27 H 0.460 0.540 28 N -0.342 5.342 29 C -0.038 4.038 30 C 0.078 3.922 31 H -0.009 1.009 32 H 0.022 0.978 33 H 0.039 0.961 34 H 0.247 0.753 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.281 0.719 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -18.062 18.345 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.098 0.902 5 C -0.245 4.245 6 N -0.586 5.586 7 Si 0.798 3.202 8 H -0.203 1.203 9 H -0.228 1.228 10 H -0.201 1.201 11 C 0.055 3.945 12 H 0.109 0.891 13 C -0.183 4.183 14 C -0.010 4.010 15 N -0.336 5.336 16 C 0.360 3.640 17 O -0.465 6.465 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.137 4.137 21 C -0.065 4.065 22 C -0.044 4.044 23 C -0.024 4.024 24 N -0.294 5.294 25 C -0.014 4.014 26 N -0.193 5.193 27 H 0.309 0.691 28 N -0.172 5.172 29 C -0.059 4.059 30 C -0.046 4.046 31 H 0.009 0.991 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.189 0.811 40 H 0.185 0.815 41 H 0.174 0.826 42 H 0.297 0.703 43 H 0.140 0.860 44 H 0.115 0.885 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.393 -18.445 17.511 25.436 hybrid contribution -0.085 0.055 -0.442 0.454 sum 0.308 -18.390 17.068 25.092 Atomic orbital electron populations 1.20549 0.82933 0.97172 0.96296 1.43998 1.01812 1.00779 1.85407 1.19561 0.99917 0.86729 1.32803 0.90242 1.25840 0.98151 1.02071 0.98461 1.70218 1.17859 1.28221 1.42277 0.85315 0.77617 0.79440 0.77853 1.20312 1.22785 1.20061 1.21566 0.96583 0.84800 0.91580 0.89144 1.23227 1.01789 0.93313 0.99940 1.22272 1.00355 0.97630 0.80758 1.48350 1.64352 1.07354 1.13583 1.18231 0.76378 0.82485 0.86864 1.90715 1.55505 1.28238 1.72060 1.19655 1.07983 0.95088 0.92366 1.23174 0.94202 0.97971 0.96914 1.21493 0.99155 1.00113 0.92982 1.21645 0.93339 0.90030 1.01447 1.17472 1.05392 0.90320 0.91167 1.22270 0.98620 0.91405 0.90088 1.70478 1.24869 1.23665 1.10376 1.27164 0.92965 0.84292 0.97017 1.48069 1.53904 1.11802 1.05541 0.69062 1.78216 1.25961 1.02574 1.10496 1.21094 0.94166 0.98211 0.92463 1.23157 1.02389 0.80152 0.98894 0.99115 0.96020 0.94246 0.94369 0.92690 0.89719 0.91296 0.89603 0.81087 0.81490 0.82596 0.70333 0.85969 0.88505 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.13 7.95 127.77 1.02 9.15 16 2 N -0.60 -26.99 2.93 -696.15 -2.04 -29.03 16 3 C -0.26 -12.97 9.60 84.03 0.81 -12.17 16 4 H 0.08 3.74 7.82 -2.91 -0.02 3.72 16 5 C -0.05 -2.64 5.19 84.86 0.44 -2.20 16 6 N -0.94 -53.06 10.53 21.65 0.23 -52.83 16 7 Si 0.97 42.60 29.56 68.60 2.03 44.63 16 8 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 9 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 C 0.16 5.81 3.45 46.18 0.16 5.97 16 12 H 0.09 3.07 7.94 -2.39 -0.02 3.05 16 13 C -0.14 -4.79 6.66 31.99 0.21 -4.58 16 14 C 0.11 3.40 6.94 86.85 0.60 4.00 16 15 N -0.60 -19.30 3.33 -829.63 -2.76 -22.06 16 16 C 0.57 19.83 7.81 86.79 0.68 20.51 16 17 O -0.58 -23.93 16.59 -3.86 -0.06 -23.99 16 18 C -0.15 -4.47 5.87 -20.11 -0.12 -4.59 16 19 C -0.10 -2.61 8.61 22.56 0.19 -2.42 16 20 C -0.12 -2.44 10.02 22.20 0.22 -2.21 16 21 C -0.04 -0.95 9.68 22.54 0.22 -0.74 16 22 C -0.04 -1.07 5.87 -20.08 -0.12 -1.19 16 23 C 0.26 6.43 7.77 137.47 1.07 7.49 16 24 N -0.57 -11.20 10.81 -193.09 -2.09 -13.29 16 25 C 0.28 2.82 13.11 180.38 2.36 5.19 16 26 N -0.47 -5.89 7.44 -60.52 -0.45 -6.34 16 27 H 0.46 1.91 8.96 -213.10 -1.91 0.00 16 28 N -0.34 -8.32 12.42 -52.35 -0.65 -8.97 16 29 C -0.04 -1.14 9.22 22.75 0.21 -0.93 16 30 C 0.08 2.35 4.45 86.73 0.39 2.73 16 31 H -0.01 -0.49 7.63 -2.39 -0.02 -0.51 16 32 H 0.02 0.87 6.05 -2.38 -0.01 0.86 16 33 H 0.04 2.02 6.64 -2.39 -0.02 2.00 16 34 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.05 2.09 7.18 -2.39 -0.02 2.07 16 36 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.07 2.17 7.98 -2.39 -0.02 2.15 16 38 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.17 4.21 2.73 -8.47 -0.02 4.19 16 40 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.16 2.77 7.82 -2.91 -0.02 2.74 16 42 H 0.28 -0.93 8.06 -2.91 -0.02 -0.95 16 43 H 0.12 4.06 7.44 -2.91 -0.02 4.04 16 44 H 0.10 2.53 6.74 -2.39 -0.02 2.51 16 45 H 0.08 2.60 4.49 -2.38 -0.01 2.59 16 Total: -1.00 -75.69 367.26 1.68 -74.01 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -0.87 Total: 13.85 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 8.34 Total: 24.02 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -7.76 Total: -132.52 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.69 1.68 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972065173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.670 kcal (2) G-P(sol) polarization free energy of solvation -75.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds