Wall clock time and date at job start Sat Apr 11 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99876 * 2 1 4 4 H 1.07995 * 119.99996 * 204.26732 * 3 2 1 5 5 C 1.38815 * 119.99938 * 24.27833 * 3 2 1 6 6 N 1.31618 * 119.99863 * 8.60849 * 5 3 2 7 7 Si 1.86794 * 119.99656 * 188.61216 * 5 3 2 8 8 H 1.48502 * 109.47585 * 59.99939 * 7 5 3 9 9 H 1.48507 * 109.46884 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47322 * 299.99326 * 7 5 3 11 11 C 1.46506 * 119.99831 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.63647 * 176.86322 * 11 2 1 13 13 C 1.55161 * 110.71793 * 299.99446 * 11 2 1 14 14 C 1.54903 * 101.57959 * 153.86817 * 13 11 2 15 15 N 1.47427 * 104.83389 * 322.99346 * 14 13 11 16 16 C 1.34779 * 125.64935 * 204.09261 * 15 14 13 17 17 O 1.21543 * 120.00004 * 182.97379 * 16 15 14 18 18 C 1.47860 * 119.99982 * 2.96714 * 16 15 14 19 19 C 1.39616 * 120.11108 * 153.49727 * 18 16 15 20 20 C 1.37977 * 119.98524 * 179.97438 * 19 18 16 21 21 C 1.38266 * 120.21775 * 0.25428 * 20 19 18 22 22 C 1.38911 * 120.22565 * 359.49442 * 21 20 19 23 23 N 1.40230 * 119.99435 * 180.25880 * 22 21 20 24 24 C 1.34714 * 126.84055 * 359.95177 * 23 22 21 25 25 N 1.30849 * 108.03203 * 179.89616 * 24 23 22 26 26 C 1.33257 * 109.84476 * 0.38960 * 25 24 23 27 27 N 1.30757 * 108.99824 * 359.75446 * 26 25 24 28 28 C 1.38594 * 120.00883 * 0.50445 * 22 21 20 29 29 C 1.47020 * 108.70023 * 24.35570 * 15 14 13 30 30 H 1.08994 * 109.46982 * 275.12271 * 1 2 3 31 31 H 1.08994 * 109.47001 * 35.13103 * 1 2 3 32 32 H 1.09011 * 109.46816 * 155.12298 * 1 2 3 33 33 H 0.97003 * 119.99873 * 180.02562 * 6 5 3 34 34 H 1.09008 * 110.99992 * 35.79640 * 13 11 2 35 35 H 1.09000 * 111.04024 * 271.95851 * 13 11 2 36 36 H 1.08999 * 110.36760 * 204.15512 * 14 13 11 37 37 H 1.09003 * 110.45875 * 81.87746 * 14 13 11 38 38 H 1.08001 * 120.00833 * 0.02562 * 19 18 16 39 39 H 1.08000 * 119.88981 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.88507 * 179.74640 * 21 20 19 41 41 H 1.08002 * 125.98300 * 0.04628 * 24 23 22 42 42 H 1.07994 * 125.50540 * 179.76369 * 26 25 24 43 43 H 1.08002 * 120.10586 * 179.73214 * 28 22 21 44 44 H 1.09005 * 109.88076 * 118.13674 * 29 15 14 45 45 H 1.09003 * 109.87946 * 239.29057 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1581 1.2273 -0.3844 5 6 1.5477 2.3349 0.4943 6 7 0.3902 2.2561 1.1158 7 14 2.3803 3.9929 0.2772 8 1 2.5545 4.2736 -1.1706 9 1 1.5392 5.0530 0.8887 10 1 3.7088 3.9703 0.9405 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0922 -0.0563 13 6 1.8436 -2.1075 1.2560 14 6 2.1172 -3.5477 0.7557 15 7 1.6778 -3.5483 -0.6516 16 6 1.2948 -4.6326 -1.3545 17 8 1.0024 -4.5232 -2.5292 18 6 1.2305 -5.9553 -0.6967 19 6 0.3595 -6.9349 -1.1772 20 6 0.3020 -8.1684 -0.5617 21 6 1.1010 -8.4372 0.5342 22 6 1.9746 -7.4709 1.0165 23 7 2.7867 -7.7506 2.1250 24 6 2.8314 -8.9015 2.8237 25 7 3.7159 -8.7620 3.7779 26 6 4.2477 -7.5412 3.7268 27 7 3.7110 -6.8844 2.7316 28 6 2.0401 -6.2286 0.4055 29 6 1.7326 -2.1710 -1.1631 30 1 -0.3633 0.0918 1.0235 31 1 -0.3633 0.8404 -0.5913 32 1 -0.3633 -0.9324 -0.4324 33 1 -0.0307 3.0590 1.4609 34 1 0.7956 -1.9807 1.5278 35 1 2.4954 -1.8539 2.0920 36 1 1.5375 -4.2669 1.3343 37 1 3.1805 -3.7783 0.8211 38 1 -0.2685 -6.7275 -2.0310 39 1 -0.3726 -8.9250 -0.9345 40 1 1.0487 -9.4032 1.0144 41 1 2.2422 -9.7854 2.6288 42 1 5.0006 -7.1564 4.3986 43 1 2.7156 -5.4747 0.7818 44 1 2.4418 -2.1101 -1.9887 45 1 0.7430 -1.8604 -1.4982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972291908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:24 Heat of formation + Delta-G solvation = 140.226352 kcal Electronic energy + Delta-G solvation = -29154.795438 eV Core-core repulsion = 25176.256516 eV Total energy + Delta-G solvation = -3978.538922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.69256 -40.55163 -38.91512 -37.44342 -34.92326 -34.50393 -32.43373 -31.72861 -31.11275 -29.95055 -29.75217 -27.91538 -26.08795 -25.08531 -24.38926 -23.35970 -22.42468 -21.92416 -21.49707 -20.11014 -19.23793 -18.17613 -17.10797 -16.93277 -16.58010 -16.24949 -16.21980 -15.94453 -15.19395 -14.92551 -14.77687 -14.51630 -14.19238 -13.97983 -13.57059 -13.35180 -13.32745 -12.77283 -12.66076 -12.57496 -12.39611 -12.16314 -11.94849 -11.76277 -11.22895 -11.22354 -10.94541 -10.78085 -10.61099 -10.50189 -10.46666 -10.29784 -10.27435 -9.99623 -9.90905 -9.84435 -9.44181 -8.83924 -8.60585 -8.42346 -6.83140 -5.77990 -3.27512 0.22008 0.58224 1.55506 1.75179 2.51396 2.70509 3.01734 3.36271 3.41715 3.42392 3.46289 3.81795 3.93117 4.25365 4.39145 4.43782 4.53019 4.56640 4.77410 4.91259 4.98388 5.06758 5.20397 5.24691 5.39220 5.47286 5.51252 5.55407 5.70604 5.80949 5.86501 5.90042 5.94171 5.96718 5.99334 6.13572 6.23537 6.33961 6.49169 6.56190 6.59437 6.78505 6.83820 7.34757 7.59021 7.61410 7.70526 7.76083 8.17365 8.33892 9.17070 9.78230 10.27400 11.26433 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002692 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.535069 B =10399.176188 C =11774.279770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.151 4.151 14 C 0.091 3.909 15 N -0.601 5.601 16 C 0.566 3.434 17 O -0.538 6.538 18 C -0.098 4.098 19 C -0.065 4.065 20 C -0.100 4.100 21 C -0.115 4.115 22 C 0.138 3.862 23 N -0.328 5.328 24 C 0.259 3.741 25 N -0.538 5.538 26 C 0.207 3.793 27 N -0.309 5.309 28 C -0.093 4.093 29 C 0.086 3.914 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.000 1.000 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.222 0.778 42 H 0.224 0.776 43 H 0.160 0.840 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 -24.518 2.221 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.307 5.307 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.191 4.191 14 C -0.032 4.032 15 N -0.334 5.334 16 C 0.354 3.646 17 O -0.416 6.416 18 C -0.102 4.102 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.136 4.136 22 C 0.045 3.955 23 N -0.113 5.113 24 C -0.036 4.036 25 N -0.264 5.264 26 C -0.095 4.095 27 N -0.134 5.134 28 C -0.114 4.114 29 C -0.038 4.038 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.018 0.982 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.238 0.762 42 H 0.240 0.760 43 H 0.177 0.823 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.763 -23.797 1.695 23.923 hybrid contribution 0.251 0.726 0.046 0.770 sum 2.014 -23.071 1.741 23.224 Atomic orbital electron populations 1.20831 0.82396 0.95560 0.99621 1.43843 1.01887 0.99797 1.85134 1.19180 0.99108 0.85637 1.35167 0.91272 1.25079 0.97496 0.98722 0.97966 1.70047 1.17352 1.27676 1.40014 0.86284 0.78634 0.83434 0.77838 1.20979 1.21601 1.20849 1.21308 0.96388 0.85993 0.90053 0.90219 1.23426 1.03061 0.92131 1.00487 1.22749 0.99023 0.99842 0.81557 1.48413 1.63875 1.07864 1.13198 1.17771 0.77977 0.82927 0.85877 1.90786 1.50096 1.85484 1.15278 1.19911 0.98775 0.95239 0.96261 1.21402 0.96466 0.91750 0.98846 1.20959 0.98917 0.97098 0.94874 1.20969 0.96124 0.98477 0.98015 1.17408 0.94061 0.95775 0.88216 1.47754 1.29544 1.11044 1.22910 1.26183 0.96778 0.91839 0.88800 1.70639 1.12599 1.20064 1.23053 1.26223 0.99306 0.88372 0.95610 1.78218 1.06580 1.16196 1.12421 1.21755 0.99578 0.95857 0.94175 1.22826 1.02751 0.79276 0.98933 0.94889 0.93709 0.98154 0.93590 0.90528 0.90156 0.90842 0.91003 0.83932 0.83915 0.84666 0.76157 0.75953 0.82282 0.91717 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 7.73 59.85 0.46 4.33 16 2 N -0.59 -14.16 2.94 -171.38 -0.50 -14.66 16 3 C -0.26 -6.96 9.61 -15.06 -0.14 -7.11 16 4 H 0.07 1.79 7.82 -52.49 -0.41 1.38 16 5 C 0.01 0.17 5.19 -17.43 -0.09 0.08 16 6 N -0.91 -25.81 10.55 55.49 0.59 -25.23 16 7 Si 0.91 21.46 29.56 -169.99 -5.03 16.43 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.38 3.43 -66.09 -0.23 3.15 16 12 H 0.08 1.53 7.93 -51.93 -0.41 1.12 16 13 C -0.15 -2.54 6.66 -24.58 -0.16 -2.71 16 14 C 0.09 1.28 5.01 -2.53 -0.01 1.27 16 15 N -0.60 -9.70 3.33 -171.63 -0.57 -10.27 16 16 C 0.57 9.13 7.65 -12.32 -0.09 9.04 16 17 O -0.54 -10.30 16.97 5.33 0.09 -10.21 16 18 C -0.10 -1.23 5.70 -104.99 -0.60 -1.83 16 19 C -0.07 -0.65 9.59 -39.16 -0.38 -1.03 16 20 C -0.10 -0.68 10.02 -39.67 -0.40 -1.08 16 21 C -0.11 -0.77 9.47 -39.32 -0.37 -1.14 16 22 C 0.14 1.33 6.69 -83.63 -0.56 0.77 16 23 N -0.33 -3.25 3.82 -11.84 -0.05 -3.30 16 24 C 0.26 2.03 11.98 -90.38 -1.08 0.94 16 25 N -0.54 -5.22 11.19 -15.75 -0.18 -5.39 16 26 C 0.21 1.95 13.03 -91.76 -1.20 0.76 16 27 N -0.31 -3.49 12.05 29.30 0.35 -3.14 16 28 C -0.09 -1.07 7.58 -39.00 -0.30 -1.37 16 29 C 0.09 1.58 6.41 -3.07 -0.02 1.56 16 30 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 31 H 0.04 1.17 7.31 -51.93 -0.38 0.79 16 32 H 0.00 0.00 6.18 -51.92 -0.32 -0.32 16 33 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.08 1.42 7.34 -51.92 -0.38 1.04 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.95 6.18 -51.93 -0.32 0.63 16 37 H 0.07 0.91 7.26 -51.93 -0.38 0.54 16 38 H 0.14 1.38 7.87 -52.49 -0.41 0.97 16 39 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.14 0.42 6.79 -52.48 -0.36 0.06 16 41 H 0.22 0.66 7.09 -52.49 -0.37 0.29 16 42 H 0.22 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.16 1.94 4.19 -52.49 -0.22 1.72 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.56 6.02 -51.93 -0.31 1.24 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -33.85 367.51 -10.40 -44.26 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.48 Total: 0.34 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -5.17 Total: 5.63 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.36 Total: -61.98 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.85 -10.40 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972291908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.483 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds