Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 120.00162 * 2 1 4 4 H 1.07999 * 120.00263 * 214.10993 * 3 2 1 5 5 C 1.38809 * 119.99692 * 34.11158 * 3 2 1 6 6 N 1.31626 * 120.00426 * 355.27845 * 5 3 2 7 7 Si 1.86810 * 120.00125 * 175.27835 * 5 3 2 8 8 H 1.48499 * 109.46640 * 89.99971 * 7 5 3 9 9 H 1.48502 * 109.47065 * 209.99788 * 7 5 3 10 10 H 1.48493 * 109.46781 * 329.99944 * 7 5 3 11 11 C 1.46496 * 120.00092 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.91999 * 176.09629 * 11 2 1 13 13 C 1.55159 * 111.00275 * 299.99609 * 11 2 1 14 14 C 1.54331 * 103.10181 * 153.66507 * 13 11 2 15 15 N 1.47019 * 107.26964 * 337.71751 * 14 13 11 16 16 C 1.34780 * 125.64700 * 178.90529 * 15 14 13 17 17 O 1.21510 * 120.00187 * 175.06848 * 16 15 14 18 18 C 1.48156 * 119.99745 * 355.07086 * 16 15 14 19 19 C 1.39948 * 120.89310 * 7.47735 * 18 16 15 20 20 C 1.38055 * 119.13594 * 179.72411 * 19 18 16 21 21 N 1.31851 * 120.98228 * 0.56284 * 20 19 18 22 22 C 1.32235 * 121.96772 * 359.71642 * 21 20 19 23 23 N 1.39832 * 119.62012 * 179.97438 * 22 21 20 24 24 C 1.35841 * 126.10439 * 359.72864 * 23 22 21 25 25 C 1.35288 * 107.61334 * 179.84246 * 24 23 22 26 26 C 1.39953 * 107.96615 * 0.42843 * 25 24 23 27 27 N 1.30817 * 108.36972 * 359.73029 * 26 25 24 28 28 C 1.38907 * 120.75336 * 359.97438 * 22 21 20 29 29 C 1.47422 * 108.70677 * 358.94098 * 15 14 13 30 30 H 1.08998 * 109.46964 * 274.98944 * 1 2 3 31 31 H 1.08997 * 109.47237 * 34.98466 * 1 2 3 32 32 H 1.09002 * 109.47414 * 154.98816 * 1 2 3 33 33 H 0.96994 * 120.00293 * 179.97438 * 6 5 3 34 34 H 1.08994 * 110.71968 * 35.21272 * 13 11 2 35 35 H 1.08999 * 110.71874 * 272.11593 * 13 11 2 36 36 H 1.08996 * 109.87706 * 97.13650 * 14 13 11 37 37 H 1.09001 * 109.87506 * 218.29879 * 14 13 11 38 38 H 1.07993 * 120.43009 * 0.02562 * 19 18 16 39 39 H 1.07999 * 119.51491 * 180.25209 * 20 19 18 40 40 H 1.08001 * 126.19212 * 359.97438 * 24 23 22 41 41 H 1.08001 * 126.01657 * 180.11775 * 25 24 23 42 42 H 1.08003 * 125.81074 * 179.73693 * 26 25 24 43 43 H 1.08009 * 120.53102 * 180.02562 * 28 22 21 44 44 H 1.08994 * 110.36806 * 142.96393 * 29 15 14 45 45 H 1.09000 * 110.37098 * 265.29108 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0903 1.2664 -0.5245 5 6 1.6347 2.2846 0.6742 6 7 0.4458 2.2150 1.2347 7 14 2.6291 3.8621 0.7861 8 1 2.3060 4.7339 -0.3719 9 1 2.2937 4.5702 2.0476 10 1 4.0777 3.5361 0.7714 11 6 2.1975 -1.2687 -0.0006 12 1 3.2718 -1.0978 -0.0698 13 6 1.8484 -2.1129 1.2535 14 6 2.1074 -3.5602 0.7842 15 7 2.0268 -3.5640 -0.6838 16 6 2.2154 -4.6364 -1.4780 17 8 2.0362 -4.5441 -2.6763 18 6 2.6412 -5.9279 -0.8900 19 6 2.7031 -6.1001 0.4975 20 6 3.0992 -7.3208 1.0063 21 7 3.4280 -8.3154 0.2057 22 6 3.3899 -8.1965 -1.1107 23 7 3.7497 -9.2833 -1.9136 24 6 4.1575 -10.5024 -1.4746 25 6 4.4053 -11.2674 -2.5626 26 6 4.1519 -10.4939 -3.7010 27 7 3.7597 -9.3073 -3.3143 28 6 2.9965 -7.0042 -1.7051 29 6 1.7064 -2.2003 -1.1432 30 1 -0.3633 0.0894 1.0238 31 1 -0.3633 0.8419 -0.5892 32 1 -0.3634 -0.9313 -0.4345 33 1 0.0862 2.9826 1.7061 34 1 0.8027 -1.9785 1.5300 35 1 2.5023 -1.8547 2.0865 36 1 3.0995 -3.8808 1.1019 37 1 1.3500 -4.2254 1.1989 38 1 2.4398 -5.2901 1.1615 39 1 3.1453 -7.4616 2.0761 40 1 4.2627 -10.8066 -0.4437 41 1 4.7444 -12.2928 -2.5540 42 1 4.2614 -10.8210 -4.7245 43 1 2.9662 -6.9111 -2.7807 44 1 2.2374 -1.9772 -2.0685 45 1 0.6314 -2.0908 -1.2859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972300342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = 151.564457 kcal Electronic energy + Delta-G solvation = -28618.335982 eV Core-core repulsion = 24640.288717 eV Total energy + Delta-G solvation = -3978.047265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.89384 -40.79366 -39.39977 -37.55593 -35.08460 -34.01467 -32.97161 -31.68691 -30.71487 -30.07135 -29.76702 -28.07316 -26.13758 -25.49624 -24.31600 -23.42001 -22.55843 -21.58119 -21.14428 -20.01753 -19.43337 -18.47610 -17.35330 -17.14903 -16.26493 -16.12044 -15.87014 -15.70888 -15.58576 -14.95413 -14.76475 -14.42931 -14.19323 -13.82011 -13.75543 -13.55327 -13.48089 -13.11836 -12.81731 -12.71472 -12.57870 -12.37538 -11.96454 -11.29014 -11.13775 -10.92227 -10.88178 -10.80563 -10.59185 -10.51016 -10.41810 -10.33675 -10.22637 -10.05008 -9.91952 -9.80819 -9.53320 -8.65895 -8.59599 -8.52531 -6.76236 -5.87172 -3.42730 0.20219 0.50347 1.67532 1.75914 2.43264 2.76678 2.86873 3.31170 3.38361 3.39550 3.51913 3.88190 4.08143 4.23200 4.37869 4.52450 4.56348 4.69005 4.74098 4.87513 5.08608 5.12141 5.19427 5.24658 5.32121 5.35351 5.38970 5.47556 5.57374 5.62431 5.69552 5.81614 5.88927 5.98635 6.15086 6.17788 6.26022 6.38672 6.53307 6.70706 6.74555 6.79250 7.01043 7.29536 7.49426 7.50537 7.67949 7.72850 8.05953 8.34378 9.13140 9.70542 10.24685 11.17079 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.002051 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.177999 B =13647.651693 C =13984.536844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.584 5.584 3 C -0.268 4.268 4 H 0.067 0.933 5 C 0.017 3.983 6 N -0.900 5.900 7 Si 0.904 3.096 8 H -0.286 1.286 9 H -0.289 1.289 10 H -0.278 1.278 11 C 0.175 3.825 12 H 0.080 0.920 13 C -0.154 4.154 14 C 0.087 3.913 15 N -0.600 5.600 16 C 0.567 3.433 17 O -0.529 6.529 18 C -0.053 4.053 19 C -0.188 4.188 20 C 0.130 3.870 21 N -0.496 5.496 22 C 0.363 3.637 23 N -0.326 5.326 24 C 0.079 3.921 25 C -0.267 4.267 26 C 0.063 3.937 27 N -0.281 5.281 28 C -0.109 4.109 29 C 0.083 3.917 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.000 1.000 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.183 0.817 41 H 0.157 0.843 42 H 0.194 0.806 43 H 0.160 0.840 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.748 -24.197 0.384 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.304 5.304 3 C -0.398 4.398 4 H 0.084 0.916 5 C -0.183 4.183 6 N -0.542 5.542 7 Si 0.733 3.267 8 H -0.213 1.213 9 H -0.215 1.215 10 H -0.203 1.203 11 C 0.064 3.936 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.035 4.035 15 N -0.332 5.332 16 C 0.354 3.646 17 O -0.406 6.406 18 C -0.065 4.065 19 C -0.208 4.208 20 C -0.027 4.027 21 N -0.210 5.210 22 C 0.136 3.864 23 N -0.104 5.104 24 C -0.063 4.063 25 C -0.295 4.295 26 C -0.126 4.126 27 N -0.099 5.099 28 C -0.132 4.132 29 C -0.041 4.041 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.196 0.804 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.174 0.826 42 H 0.211 0.789 43 H 0.178 0.822 44 H 0.093 0.907 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.380 -23.576 -0.179 24.183 hybrid contribution 0.459 0.656 0.164 0.817 sum 5.839 -22.921 -0.016 23.653 Atomic orbital electron populations 1.20922 0.82662 0.95594 0.99621 1.43686 1.01701 0.99714 1.85346 1.19116 1.05353 0.88114 1.27178 0.91561 1.25358 0.96815 0.99248 0.96890 1.70019 1.15978 1.30190 1.38061 0.86291 0.80028 0.83158 0.77268 1.21299 1.21483 1.20283 1.21528 0.96419 0.85831 0.89808 0.90192 1.23329 1.03349 0.91698 1.01070 1.22610 1.00712 0.99959 0.80251 1.48308 1.67971 1.09488 1.07467 1.17657 0.78592 0.82464 0.85853 1.90801 1.51636 1.83894 1.14309 1.20261 0.98224 0.94307 0.93697 1.23787 1.00111 1.01048 0.95863 1.22561 0.93592 0.87160 0.99404 1.66694 1.17152 1.34591 1.02585 1.17488 0.96662 0.85205 0.87079 1.45784 1.51157 1.08837 1.04603 1.22927 0.97537 0.84665 1.01141 1.21677 1.14302 1.02474 0.91042 1.24202 0.97024 0.90664 1.00697 1.77572 1.23994 1.21765 0.86576 1.21680 0.98274 0.90252 1.02990 1.23174 1.01560 0.79119 1.00204 0.94711 0.93880 0.98148 0.93477 0.90286 0.90167 0.90652 0.90896 0.80357 0.80837 0.80006 0.82574 0.78940 0.82247 0.90658 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.59 7.89 59.84 0.47 4.07 16 2 N -0.58 -13.59 2.95 -170.74 -0.50 -14.10 16 3 C -0.27 -6.97 9.51 -15.06 -0.14 -7.11 16 4 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 5 C 0.02 0.45 5.39 -17.43 -0.09 0.35 16 6 N -0.90 -24.85 10.64 55.49 0.59 -24.26 16 7 Si 0.90 20.86 29.56 -169.99 -5.02 15.84 16 8 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 C 0.18 3.26 3.57 -65.52 -0.23 3.02 16 12 H 0.08 1.51 7.96 -51.93 -0.41 1.09 16 13 C -0.15 -2.32 6.53 -24.89 -0.16 -2.48 16 14 C 0.09 1.03 4.88 -3.06 -0.01 1.01 16 15 N -0.60 -9.01 3.33 -171.46 -0.57 -9.58 16 16 C 0.57 9.03 7.83 -12.19 -0.10 8.93 16 17 O -0.53 -10.30 16.76 5.36 0.09 -10.21 16 18 C -0.05 -0.70 5.90 -104.67 -0.62 -1.31 16 19 C -0.19 -1.82 8.67 -39.01 -0.34 -2.15 16 20 C 0.13 1.12 11.17 -17.61 -0.20 0.93 16 21 N -0.50 -5.42 9.83 -12.34 -0.12 -5.55 16 22 C 0.36 4.58 7.55 -154.43 -1.17 3.41 16 23 N -0.33 -3.97 3.81 -12.12 -0.05 -4.02 16 24 C 0.08 0.74 11.10 -16.83 -0.19 0.55 16 25 C -0.27 -2.09 10.80 -39.99 -0.43 -2.52 16 26 C 0.06 0.56 12.02 -17.34 -0.21 0.35 16 27 N -0.28 -3.49 11.83 30.64 0.36 -3.12 16 28 C -0.11 -1.48 9.27 -38.82 -0.36 -1.84 16 29 C 0.08 1.45 6.44 -2.27 -0.01 1.44 16 30 H 0.03 0.86 7.24 -51.93 -0.38 0.48 16 31 H 0.04 1.09 7.61 -51.93 -0.40 0.69 16 32 H 0.00 0.00 5.96 -51.93 -0.31 -0.31 16 33 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.08 1.29 7.33 -51.93 -0.38 0.91 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 0.72 6.68 -51.93 -0.35 0.38 16 37 H 0.07 0.70 6.82 -51.93 -0.35 0.34 16 38 H 0.18 1.39 2.96 -52.82 -0.16 1.24 16 39 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.18 1.30 8.05 -52.49 -0.42 0.87 16 41 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.19 0.99 8.06 -52.48 -0.42 0.56 16 43 H 0.16 2.38 7.39 -52.48 -0.39 1.99 16 44 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 45 H 0.08 1.39 5.97 -51.93 -0.31 1.08 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -32.71 369.06 -8.96 -41.67 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.51 Total: 1.11 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -3.79 Total: 6.64 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.29 Total: -60.62 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.71 -8.96 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972300342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.237 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds