Wall clock time and date at job start Sat Apr 11 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 119.99873 * 2 1 4 4 H 1.08005 * 119.99841 * 161.06833 * 3 2 1 5 5 C 1.38815 * 119.99965 * 340.80142 * 3 2 1 6 6 N 1.31613 * 119.99966 * 346.78484 * 5 3 2 7 7 Si 1.86797 * 119.99801 * 166.79585 * 5 3 2 8 8 H 1.48502 * 109.47563 * 59.99851 * 7 5 3 9 9 H 1.48504 * 109.47009 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47172 * 299.99529 * 7 5 3 11 11 C 1.46502 * 119.99973 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.63855 * 181.68588 * 11 2 1 13 13 C 1.55156 * 110.72089 * 305.02035 * 11 2 1 14 14 C 1.54906 * 101.57970 * 153.86987 * 13 11 2 15 15 N 1.47422 * 104.83468 * 322.98705 * 14 13 11 16 16 C 1.34769 * 125.65143 * 204.16894 * 15 14 13 17 17 O 1.21521 * 120.00195 * 179.97438 * 16 15 14 18 18 C 1.48178 * 119.99970 * 359.95614 * 16 15 14 19 19 C 1.39134 * 119.69452 * 179.72790 * 18 16 15 20 20 C 1.39281 * 118.97871 * 179.77986 * 19 18 16 21 21 N 1.39938 * 120.82808 * 180.22061 * 20 19 18 22 22 C 1.35817 * 126.10400 * 185.27464 * 21 20 19 23 23 C 1.35286 * 107.61657 * 179.97438 * 22 21 20 24 24 C 1.39940 * 107.96760 * 0.02562 * 23 22 21 25 25 N 1.30827 * 108.36862 * 359.75529 * 24 23 22 26 26 C 1.39283 * 118.35109 * 0.48719 * 20 19 18 27 27 C 1.38348 * 119.27845 * 359.75482 * 26 20 19 28 28 N 1.31594 * 120.97646 * 359.97438 * 27 26 20 29 29 C 1.47027 * 108.70015 * 24.13075 * 15 14 13 30 30 H 1.08995 * 109.47456 * 84.81627 * 1 2 3 31 31 H 1.09000 * 109.46689 * 204.81195 * 1 2 3 32 32 H 1.08997 * 109.47451 * 324.80782 * 1 2 3 33 33 H 0.97001 * 120.00411 * 179.97438 * 6 5 3 34 34 H 1.09001 * 111.00323 * 271.94525 * 13 11 2 35 35 H 1.09003 * 111.00476 * 35.79039 * 13 11 2 36 36 H 1.09006 * 110.36192 * 204.15001 * 14 13 11 37 37 H 1.09000 * 110.46359 * 81.88244 * 14 13 11 38 38 H 1.08006 * 120.51000 * 0.02562 * 19 18 16 39 39 H 1.08006 * 126.19379 * 359.94333 * 22 21 20 40 40 H 1.08006 * 126.01493 * 180.02562 * 23 22 21 41 41 H 1.08009 * 125.81903 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.36547 * 179.77972 * 26 20 19 43 43 H 1.07995 * 119.51217 * 179.97438 * 27 26 20 44 44 H 1.09000 * 109.88439 * 239.52331 * 29 15 14 45 45 H 1.09000 * 109.88161 * 118.35739 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1859 1.2112 0.3035 5 6 1.5134 2.3546 -0.3953 6 7 0.3518 2.2956 -1.0113 7 14 2.3062 4.0111 -0.0534 8 1 3.6276 4.0762 -0.7278 9 1 1.4325 5.0944 -0.5717 10 1 2.4887 4.1797 1.4106 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 0.0295 13 6 1.7508 -2.1611 1.1875 14 6 2.0639 -3.5785 0.6467 15 7 1.7324 -3.5167 -0.7884 16 6 1.4043 -4.5683 -1.5648 17 8 1.1485 -4.3991 -2.7407 18 6 1.3559 -5.9310 -0.9847 19 6 1.0109 -7.0113 -1.7907 20 6 0.9745 -8.2862 -1.2311 21 7 0.6370 -9.4007 -2.0072 22 6 0.4708 -10.6704 -1.5547 23 6 0.1503 -11.4449 -2.6166 24 6 0.1194 -10.6284 -3.7527 25 7 0.4054 -9.4048 -3.3889 26 6 1.2770 -8.4237 0.1215 27 6 1.6060 -7.3003 0.8588 28 7 1.6372 -6.1090 0.3006 29 6 1.8182 -2.1177 -1.2322 30 1 -0.3634 0.0928 -1.0234 31 1 -0.3633 -0.9328 0.4313 32 1 -0.3634 0.8398 0.5922 33 1 -0.0930 3.1122 -1.2872 34 1 2.3373 -1.9451 2.0805 35 1 0.6850 -2.0446 1.3845 36 1 1.4432 -4.3213 1.1478 37 1 3.1196 -3.8135 0.7825 38 1 0.7787 -6.8641 -2.8352 39 1 0.5760 -11.0020 -0.5322 40 1 -0.0470 -12.5065 -2.5919 41 1 -0.1068 -10.9524 -4.7579 42 1 1.2552 -9.3968 0.5896 43 1 1.8408 -7.4025 1.9080 44 1 0.8540 -1.7931 -1.6235 45 1 2.5847 -2.0189 -2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972314411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:42 Heat of formation + Delta-G solvation = 139.758286 kcal Electronic energy + Delta-G solvation = -28681.653086 eV Core-core repulsion = 24703.093867 eV Total energy + Delta-G solvation = -3978.559219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.02150 -40.69262 -39.16011 -37.36454 -35.01300 -34.57706 -32.07636 -31.55397 -30.77747 -30.19116 -29.63509 -27.90091 -26.03917 -25.31514 -24.39737 -23.28662 -22.31857 -21.69783 -21.25315 -19.91544 -19.14153 -18.34697 -17.25488 -17.01733 -16.34334 -16.15472 -15.86526 -15.66119 -15.47430 -15.00241 -14.86375 -14.45360 -14.22886 -14.00122 -13.64975 -13.36591 -13.26919 -13.20556 -12.70476 -12.55799 -12.26402 -12.08589 -11.78225 -11.50450 -11.34792 -11.21669 -10.86489 -10.78154 -10.57696 -10.40516 -10.30276 -10.20368 -9.80608 -9.78240 -9.75853 -9.64528 -9.50813 -8.89146 -8.54094 -8.24651 -6.82746 -5.72814 -3.17520 0.12797 0.47815 1.66722 1.78093 2.30543 2.73171 3.05551 3.39743 3.45028 3.45937 3.63758 3.86835 3.94051 4.11951 4.38802 4.42226 4.49080 4.63423 4.74175 4.97486 5.09975 5.15086 5.17406 5.29067 5.39007 5.42855 5.45691 5.56916 5.67510 5.75487 5.89529 5.95599 6.05916 6.09577 6.24612 6.40752 6.47115 6.54889 6.62683 6.69680 6.86394 6.92219 7.10312 7.37884 7.41411 7.73172 7.78662 7.82122 8.28789 8.36829 9.21583 9.84482 10.32077 11.31674 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.002099 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.840273 B =13333.777520 C =13917.288319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.259 4.259 4 H 0.072 0.928 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.157 4.157 14 C 0.105 3.895 15 N -0.587 5.587 16 C 0.572 3.428 17 O -0.535 6.535 18 C 0.121 3.879 19 C -0.118 4.118 20 C 0.202 3.798 21 N -0.331 5.331 22 C 0.054 3.946 23 C -0.255 4.255 24 C 0.060 3.940 25 N -0.279 5.279 26 C -0.183 4.183 27 C 0.126 3.874 28 N -0.458 5.458 29 C 0.084 3.916 30 H 0.029 0.971 31 H 0.001 0.999 32 H 0.048 0.952 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.162 0.838 39 H 0.181 0.819 40 H 0.158 0.842 41 H 0.193 0.807 42 H 0.145 0.855 43 H 0.174 0.826 44 H 0.075 0.925 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -29.133 4.558 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.388 4.388 4 H 0.089 0.911 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.197 4.197 14 C -0.018 4.018 15 N -0.318 5.318 16 C 0.358 3.642 17 O -0.412 6.412 18 C -0.017 4.017 19 C -0.141 4.141 20 C 0.100 3.900 21 N -0.107 5.107 22 C -0.087 4.087 23 C -0.283 4.283 24 C -0.129 4.129 25 N -0.097 5.097 26 C -0.207 4.207 27 C -0.033 4.033 28 N -0.171 5.171 29 C -0.040 4.040 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.179 0.821 39 H 0.198 0.802 40 H 0.175 0.825 41 H 0.210 0.790 42 H 0.163 0.837 43 H 0.191 0.809 44 H 0.094 0.906 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.083 -26.871 3.947 27.181 hybrid contribution -0.017 -0.875 -0.183 0.894 sum 1.065 -27.746 3.764 28.021 Atomic orbital electron populations 1.20821 0.82267 0.95663 0.99555 1.43965 1.02015 0.99911 1.84849 1.19219 0.96350 0.84609 1.38633 0.91054 1.25000 0.97594 0.98475 0.98644 1.70090 1.16840 1.26851 1.41348 0.86281 0.78397 0.83522 0.77993 1.20935 1.21664 1.21063 1.21360 0.96361 0.85836 0.90221 0.90329 1.23419 1.02644 0.93858 0.99796 1.22650 1.00775 0.98519 0.79881 1.48371 1.64625 1.07375 1.11441 1.17386 0.78851 0.82602 0.85366 1.90815 1.50410 1.84556 1.15423 1.21192 0.96720 0.94365 0.89463 1.21827 0.99502 0.89501 1.03261 1.17640 0.97042 0.85448 0.89822 1.45969 1.53078 1.05478 1.06189 1.22823 1.01084 0.83767 1.01051 1.21684 1.13368 1.01616 0.91613 1.24219 0.97915 0.90091 1.00645 1.77611 1.21751 1.21732 0.88567 1.22006 1.04439 1.02232 0.91988 1.22795 0.93798 0.86214 1.00527 1.67983 1.13088 1.25137 1.10863 1.23046 1.02560 0.78322 1.00079 0.95275 0.98065 0.93339 0.93601 0.90466 0.90610 0.88408 0.91798 0.82072 0.80178 0.82470 0.78989 0.83700 0.80891 0.90636 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 7.72 59.85 0.46 4.45 16 2 N -0.59 -14.48 2.94 -171.39 -0.50 -14.99 16 3 C -0.26 -6.99 9.66 -15.06 -0.15 -7.14 16 4 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 5 C 0.00 0.04 5.11 -17.43 -0.09 -0.05 16 6 N -0.91 -26.47 10.50 55.49 0.58 -25.89 16 7 Si 0.91 21.77 29.57 -169.99 -5.03 16.75 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.47 3.44 -66.10 -0.23 3.24 16 12 H 0.08 1.55 7.91 -51.93 -0.41 1.14 16 13 C -0.16 -2.57 6.59 -24.58 -0.16 -2.73 16 14 C 0.10 1.52 5.94 -2.53 -0.02 1.50 16 15 N -0.59 -10.31 3.33 -171.51 -0.57 -10.88 16 16 C 0.57 10.27 7.84 -12.18 -0.10 10.17 16 17 O -0.53 -11.32 16.65 5.35 0.09 -11.23 16 18 C 0.12 1.73 6.72 -83.04 -0.56 1.17 16 19 C -0.12 -1.59 9.26 -38.86 -0.36 -1.95 16 20 C 0.20 2.15 6.72 -83.38 -0.56 1.58 16 21 N -0.33 -3.40 3.81 -10.42 -0.04 -3.44 16 22 C 0.05 0.37 10.85 -16.84 -0.18 0.18 16 23 C -0.25 -1.61 10.80 -40.00 -0.43 -2.04 16 24 C 0.06 0.48 12.02 -17.34 -0.21 0.27 16 25 N -0.28 -3.25 11.98 30.64 0.37 -2.89 16 26 C -0.18 -1.34 9.54 -39.15 -0.37 -1.71 16 27 C 0.13 0.99 11.17 -17.61 -0.20 0.79 16 28 N -0.46 -5.37 6.59 -9.86 -0.07 -5.43 16 29 C 0.08 1.69 6.50 -3.06 -0.02 1.67 16 30 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 31 H 0.00 0.02 6.13 -51.93 -0.32 -0.30 16 32 H 0.05 1.28 7.09 -51.93 -0.37 0.92 16 33 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.33 6.14 -51.93 -0.32 1.01 16 36 H 0.10 1.30 5.88 -51.93 -0.31 1.00 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.16 2.44 7.39 -52.48 -0.39 2.05 16 39 H 0.18 0.52 7.16 -52.48 -0.38 0.14 16 40 H 0.16 0.53 8.06 -52.48 -0.42 0.11 16 41 H 0.19 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.15 0.51 6.90 -52.49 -0.36 0.15 16 43 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.08 1.72 7.06 -51.93 -0.37 1.36 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -34.77 370.31 -8.43 -43.19 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.68 Total: -0.20 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -3.16 Total: 9.42 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.23 Total: -63.51 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.77 -8.43 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972314411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.952 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds