Wall clock time and date at job start Sat Apr 11 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 119.99873 * 2 1 4 4 H 1.08005 * 119.99841 * 161.06833 * 3 2 1 5 5 C 1.38815 * 119.99965 * 340.80142 * 3 2 1 6 6 N 1.31613 * 119.99966 * 346.78484 * 5 3 2 7 7 Si 1.86797 * 119.99801 * 166.79585 * 5 3 2 8 8 H 1.48502 * 109.47563 * 59.99851 * 7 5 3 9 9 H 1.48504 * 109.47009 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47172 * 299.99529 * 7 5 3 11 11 C 1.46502 * 119.99973 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.63855 * 181.68588 * 11 2 1 13 13 C 1.55156 * 110.72089 * 305.02035 * 11 2 1 14 14 C 1.54906 * 101.57970 * 153.86987 * 13 11 2 15 15 N 1.47422 * 104.83468 * 322.98705 * 14 13 11 16 16 C 1.34769 * 125.65143 * 204.16894 * 15 14 13 17 17 O 1.21521 * 120.00195 * 179.97438 * 16 15 14 18 18 C 1.48178 * 119.99970 * 359.95614 * 16 15 14 19 19 C 1.39134 * 119.69452 * 179.72790 * 18 16 15 20 20 C 1.39281 * 118.97871 * 179.77986 * 19 18 16 21 21 N 1.39938 * 120.82808 * 180.22061 * 20 19 18 22 22 C 1.35817 * 126.10400 * 185.27464 * 21 20 19 23 23 C 1.35286 * 107.61657 * 179.97438 * 22 21 20 24 24 C 1.39940 * 107.96760 * 0.02562 * 23 22 21 25 25 N 1.30827 * 108.36862 * 359.75529 * 24 23 22 26 26 C 1.39283 * 118.35109 * 0.48719 * 20 19 18 27 27 C 1.38348 * 119.27845 * 359.75482 * 26 20 19 28 28 N 1.31594 * 120.97646 * 359.97438 * 27 26 20 29 29 C 1.47027 * 108.70015 * 24.13075 * 15 14 13 30 30 H 1.08995 * 109.47456 * 84.81627 * 1 2 3 31 31 H 1.09000 * 109.46689 * 204.81195 * 1 2 3 32 32 H 1.08997 * 109.47451 * 324.80782 * 1 2 3 33 33 H 0.97001 * 120.00411 * 179.97438 * 6 5 3 34 34 H 1.09001 * 111.00323 * 271.94525 * 13 11 2 35 35 H 1.09003 * 111.00476 * 35.79039 * 13 11 2 36 36 H 1.09006 * 110.36192 * 204.15001 * 14 13 11 37 37 H 1.09000 * 110.46359 * 81.88244 * 14 13 11 38 38 H 1.08006 * 120.51000 * 0.02562 * 19 18 16 39 39 H 1.08006 * 126.19379 * 359.94333 * 22 21 20 40 40 H 1.08006 * 126.01493 * 180.02562 * 23 22 21 41 41 H 1.08009 * 125.81903 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.36547 * 179.77972 * 26 20 19 43 43 H 1.07995 * 119.51217 * 179.97438 * 27 26 20 44 44 H 1.09000 * 109.88439 * 239.52331 * 29 15 14 45 45 H 1.09000 * 109.88161 * 118.35739 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1859 1.2112 0.3035 5 6 1.5134 2.3546 -0.3953 6 7 0.3518 2.2956 -1.0113 7 14 2.3062 4.0111 -0.0534 8 1 3.6276 4.0762 -0.7278 9 1 1.4325 5.0944 -0.5717 10 1 2.4887 4.1797 1.4106 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 0.0295 13 6 1.7508 -2.1611 1.1875 14 6 2.0639 -3.5785 0.6467 15 7 1.7324 -3.5167 -0.7884 16 6 1.4043 -4.5683 -1.5648 17 8 1.1485 -4.3991 -2.7407 18 6 1.3559 -5.9310 -0.9847 19 6 1.0109 -7.0113 -1.7907 20 6 0.9745 -8.2862 -1.2311 21 7 0.6370 -9.4007 -2.0072 22 6 0.4708 -10.6704 -1.5547 23 6 0.1503 -11.4449 -2.6166 24 6 0.1194 -10.6284 -3.7527 25 7 0.4054 -9.4048 -3.3889 26 6 1.2770 -8.4237 0.1215 27 6 1.6060 -7.3003 0.8588 28 7 1.6372 -6.1090 0.3006 29 6 1.8182 -2.1177 -1.2322 30 1 -0.3634 0.0928 -1.0234 31 1 -0.3633 -0.9328 0.4313 32 1 -0.3634 0.8398 0.5922 33 1 -0.0930 3.1122 -1.2872 34 1 2.3373 -1.9451 2.0805 35 1 0.6850 -2.0446 1.3845 36 1 1.4432 -4.3213 1.1478 37 1 3.1196 -3.8135 0.7825 38 1 0.7787 -6.8641 -2.8352 39 1 0.5760 -11.0020 -0.5322 40 1 -0.0470 -12.5065 -2.5919 41 1 -0.1068 -10.9524 -4.7579 42 1 1.2552 -9.3968 0.5896 43 1 1.8408 -7.4025 1.9080 44 1 0.8540 -1.7931 -1.6235 45 1 2.5847 -2.0189 -2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972314411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:41 Heat of formation + Delta-G solvation = 116.788067 kcal Electronic energy + Delta-G solvation = -28682.649149 eV Core-core repulsion = 24703.093867 eV Total energy + Delta-G solvation = -3979.555283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.65801 -41.68997 -40.36550 -38.92029 -36.63526 -35.51134 -33.53126 -32.75909 -31.58082 -31.13374 -30.83310 -29.44480 -28.09527 -26.46731 -25.21844 -24.62832 -23.80292 -22.56152 -21.85374 -20.99024 -20.72543 -19.24883 -18.96838 -18.30462 -17.54163 -17.08414 -16.94134 -16.78373 -16.55512 -16.37622 -15.88296 -15.67032 -15.13131 -15.03102 -14.97343 -14.67941 -14.54202 -14.34560 -14.05738 -13.81190 -13.67100 -13.34135 -13.19229 -13.06589 -12.71468 -12.51394 -12.39134 -12.24983 -12.12903 -12.07092 -11.86104 -11.78132 -11.55797 -11.36676 -10.65969 -10.52405 -10.49317 -10.37224 -9.69200 -9.51168 -8.86612 -7.83045 -5.30487 -0.66090 -0.30927 1.03281 1.17716 1.48173 1.50623 1.57368 1.61245 1.77227 1.80626 2.51220 2.68972 2.91824 3.23804 3.29169 3.52681 3.57468 3.68229 3.86851 3.88155 3.91520 4.02440 4.10746 4.28119 4.34596 4.42486 4.48085 4.54208 4.58530 4.69013 4.73082 4.80956 4.86630 4.99982 5.01261 5.07931 5.16815 5.22060 5.31751 5.42783 5.45680 5.58242 5.62791 5.70494 5.99883 6.29007 6.38614 6.52239 6.58381 6.93575 7.12142 7.83272 8.27354 9.20343 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.002099 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.840273 B =13333.777520 C =13917.288319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.602 5.602 3 C -0.264 4.264 4 H 0.082 0.918 5 C -0.059 4.059 6 N -0.943 5.943 7 Si 0.976 3.024 8 H -0.276 1.276 9 H -0.299 1.299 10 H -0.273 1.273 11 C 0.167 3.833 12 H 0.086 0.914 13 C -0.142 4.142 14 C 0.114 3.886 15 N -0.589 5.589 16 C 0.565 3.435 17 O -0.585 6.585 18 C 0.102 3.898 19 C -0.139 4.139 20 C 0.194 3.806 21 N -0.348 5.348 22 C 0.056 3.944 23 C -0.256 4.256 24 C 0.057 3.943 25 N -0.347 5.347 26 C -0.152 4.152 27 C 0.136 3.864 28 N -0.469 5.469 29 C 0.094 3.906 30 H -0.008 1.008 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.247 0.753 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.227 0.773 40 H 0.190 0.810 41 H 0.215 0.785 42 H 0.198 0.802 43 H 0.226 0.774 44 H 0.038 0.962 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -33.088 8.514 34.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.323 5.323 3 C -0.393 4.393 4 H 0.100 0.900 5 C -0.254 4.254 6 N -0.590 5.590 7 Si 0.803 3.197 8 H -0.201 1.201 9 H -0.226 1.226 10 H -0.199 1.199 11 C 0.058 3.942 12 H 0.104 0.896 13 C -0.181 4.181 14 C -0.007 4.007 15 N -0.320 5.320 16 C 0.353 3.647 17 O -0.466 6.466 18 C -0.035 4.035 19 C -0.162 4.162 20 C 0.092 3.908 21 N -0.125 5.125 22 C -0.083 4.083 23 C -0.283 4.283 24 C -0.131 4.131 25 N -0.165 5.165 26 C -0.175 4.175 27 C -0.023 4.023 28 N -0.182 5.182 29 C -0.031 4.031 30 H 0.011 0.989 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.243 0.757 40 H 0.207 0.793 41 H 0.231 0.769 42 H 0.215 0.785 43 H 0.242 0.758 44 H 0.056 0.944 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.542 -30.882 7.932 31.985 hybrid contribution -0.459 0.075 -1.423 1.498 sum 2.082 -30.807 6.508 31.556 Atomic orbital electron populations 1.20462 0.82869 0.95907 0.97080 1.44161 1.01988 1.01093 1.85068 1.19654 0.96827 0.85554 1.37314 0.89984 1.25849 0.98366 1.02068 0.99093 1.70290 1.18498 1.27101 1.43105 0.85214 0.77370 0.78927 0.78146 1.20148 1.22553 1.19912 1.21574 0.96371 0.84576 0.91661 0.89580 1.23305 1.02254 0.93696 0.98894 1.22819 1.02520 0.97699 0.77664 1.48423 1.64699 1.06033 1.12825 1.18084 0.77492 0.84209 0.84877 1.90768 1.52438 1.85673 1.17742 1.20423 1.00127 0.91942 0.90999 1.21562 1.01452 0.91357 1.01868 1.17873 0.97036 0.84531 0.91320 1.46087 1.54108 1.06437 1.05881 1.23675 0.99362 0.82092 1.03189 1.22150 1.12552 1.02967 0.90638 1.24817 0.96211 0.89581 1.02460 1.77592 1.24589 1.24007 0.90274 1.22577 1.00568 1.04452 0.89863 1.23686 0.91531 0.84767 1.02354 1.67856 1.13665 1.27590 1.09093 1.22650 1.00001 0.80593 0.99886 0.98923 0.95333 0.95675 0.94362 0.87835 0.91693 0.86296 0.89565 0.85639 0.75670 0.79296 0.76868 0.78531 0.75809 0.94360 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.38 7.72 127.77 0.99 10.37 16 2 N -0.60 -30.38 2.94 -696.16 -2.05 -32.43 16 3 C -0.26 -14.41 9.66 84.03 0.81 -13.60 16 4 H 0.08 4.22 7.81 -2.91 -0.02 4.20 16 5 C -0.06 -3.36 5.11 84.86 0.43 -2.93 16 6 N -0.94 -57.47 10.50 21.65 0.23 -57.24 16 7 Si 0.98 45.49 29.57 68.60 2.03 47.52 16 8 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 9 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 C 0.17 6.73 3.44 46.18 0.16 6.89 16 12 H 0.09 3.33 7.91 -2.39 -0.02 3.32 16 13 C -0.14 -4.38 6.59 31.98 0.21 -4.17 16 14 C 0.11 3.07 5.94 86.85 0.52 3.59 16 15 N -0.59 -21.20 3.33 -814.82 -2.71 -23.91 16 16 C 0.57 21.51 7.84 86.89 0.68 22.19 16 17 O -0.59 -27.29 16.65 -3.78 -0.06 -27.36 16 18 C 0.10 2.94 6.72 41.86 0.28 3.22 16 19 C -0.14 -3.92 9.26 22.74 0.21 -3.70 16 20 C 0.19 3.81 6.72 38.35 0.26 4.06 16 21 N -0.35 -6.64 3.81 -186.87 -0.71 -7.35 16 22 C 0.06 0.54 10.85 83.40 0.91 1.45 16 23 C -0.26 -2.43 10.80 22.00 0.24 -2.20 16 24 C 0.06 0.87 12.02 85.25 1.02 1.89 16 25 N -0.35 -8.29 11.98 -56.98 -0.68 -8.97 16 26 C -0.15 -1.44 9.54 22.55 0.22 -1.22 16 27 C 0.14 1.42 11.17 84.75 0.95 2.36 16 28 N -0.47 -9.68 6.59 -185.12 -1.22 -10.90 16 29 C 0.09 4.00 6.50 86.73 0.56 4.56 16 30 H -0.01 -0.44 7.36 -2.39 -0.02 -0.46 16 31 H 0.03 1.28 6.13 -2.39 -0.01 1.27 16 32 H 0.02 1.37 7.09 -2.39 -0.02 1.36 16 33 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.06 2.17 6.14 -2.39 -0.01 2.15 16 36 H 0.12 2.78 5.88 -2.38 -0.01 2.77 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.13 4.35 7.39 -2.91 -0.02 4.33 16 39 H 0.23 -0.21 7.16 -2.91 -0.02 -0.23 16 40 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.21 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.20 -0.20 6.90 -2.91 -0.02 -0.22 16 43 H 0.23 0.05 8.06 -2.91 -0.02 0.03 16 44 H 0.04 1.89 7.06 -2.39 -0.02 1.88 16 45 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -85.48 370.31 4.29 -81.19 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.02 Total: 6.68 kcal Atomic # 6 Polarization: 24.33 SS G_CDS: 8.44 Total: 32.77 kcal Atomic # 7 Polarization: -133.67 SS G_CDS: -7.14 Total: -140.81 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.06 Total: -27.36 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -85.48 4.29 -81.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972314411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.983 kcal (2) G-P(sol) polarization free energy of solvation -85.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds