Wall clock time and date at job start Sat Apr 11 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00007 * 2 1 4 4 H 1.08001 * 120.00692 * 149.92290 * 3 2 1 5 5 C 1.38820 * 119.99930 * 329.92071 * 3 2 1 6 6 N 1.31626 * 119.99965 * 151.70994 * 5 3 2 7 7 Si 1.86798 * 119.99905 * 331.71411 * 5 3 2 8 8 H 1.48498 * 109.47279 * 95.38556 * 7 5 3 9 9 H 1.48509 * 109.46796 * 215.38563 * 7 5 3 10 10 H 1.48499 * 109.47316 * 335.37816 * 7 5 3 11 11 C 1.46496 * 119.99928 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.64023 * 178.31267 * 11 2 1 13 13 C 1.55442 * 110.70474 * 55.00116 * 11 2 1 14 14 C 1.54916 * 101.44924 * 206.14365 * 13 11 2 15 15 N 1.47419 * 104.92695 * 37.00769 * 14 13 11 16 16 C 1.34777 * 125.64816 * 155.79602 * 15 14 13 17 17 O 1.21516 * 119.99915 * 180.02562 * 16 15 14 18 18 C 1.48176 * 120.00228 * 0.02673 * 16 15 14 19 19 C 1.39127 * 119.69689 * 180.02562 * 18 16 15 20 20 C 1.39285 * 118.97403 * 179.97438 * 19 18 16 21 21 N 1.39941 * 120.81932 * 179.97438 * 20 19 18 22 22 C 1.35824 * 126.10228 * 180.02562 * 21 20 19 23 23 C 1.35285 * 107.61816 * 179.97438 * 22 21 20 24 24 C 1.39943 * 107.97034 * 359.97438 * 23 22 21 25 25 N 1.30824 * 108.36256 * 359.76358 * 24 23 22 26 26 C 1.39280 * 118.35811 * 0.02562 * 20 19 18 27 27 C 1.38346 * 119.27489 * 359.97438 * 26 20 19 28 28 N 1.31598 * 120.97748 * 359.72581 * 27 26 20 29 29 C 1.47022 * 108.70711 * 335.81284 * 15 14 13 30 30 H 1.09001 * 109.46858 * 275.27813 * 1 2 3 31 31 H 1.09001 * 109.47153 * 35.27366 * 1 2 3 32 32 H 1.08990 * 109.47080 * 155.27760 * 1 2 3 33 33 H 0.96993 * 119.99908 * 180.02562 * 6 5 3 34 34 H 1.08999 * 111.12037 * 88.09572 * 13 11 2 35 35 H 1.09000 * 111.02111 * 324.15112 * 13 11 2 36 36 H 1.08997 * 110.36883 * 278.11358 * 14 13 11 37 37 H 1.09001 * 110.36809 * 155.89912 * 14 13 11 38 38 H 1.07999 * 120.50844 * 0.02562 * 19 18 16 39 39 H 1.08004 * 126.18685 * 359.94831 * 22 21 20 40 40 H 1.08002 * 126.01175 * 179.97438 * 23 22 21 41 41 H 1.07998 * 125.81957 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.36514 * 179.97438 * 26 20 19 43 43 H 1.07994 * 119.51032 * 180.02562 * 27 26 20 44 44 H 1.08995 * 109.88215 * 120.47291 * 29 15 14 45 45 H 1.08994 * 109.88532 * 241.64500 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1207 1.2490 0.4687 5 6 1.5958 2.3071 -0.6026 6 7 1.9095 3.5098 -0.1692 7 14 0.4053 2.1091 -2.0283 8 1 -0.9887 2.1424 -1.5175 9 1 0.6042 3.2173 -2.9967 10 1 0.6540 0.8105 -2.7043 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.7500 -2.1622 -1.1901 14 6 2.0638 -3.5785 -0.6467 15 7 1.7323 -3.5166 0.7885 16 6 1.4045 -4.5683 1.5650 17 8 1.1487 -4.3990 2.7408 18 6 1.3560 -5.9310 0.9850 19 6 1.0163 -7.0119 1.7923 20 6 0.9748 -8.2862 1.2314 21 7 0.6384 -9.4007 2.0079 22 6 0.5658 -10.6858 1.5742 23 6 0.2110 -11.4546 2.6293 24 6 0.0622 -10.6189 3.7419 25 7 0.3228 -9.3911 3.3728 26 6 1.2775 -8.4238 -0.1211 27 6 1.6064 -7.3004 -0.8585 28 7 1.6315 -6.1082 -0.3018 29 6 1.8182 -2.1176 1.2323 30 1 -0.3633 0.0945 1.0233 31 1 -0.3633 0.8390 -0.5935 32 1 -0.3633 -0.9334 -0.4298 33 1 1.5222 4.2932 -0.5899 34 1 2.3362 -1.9480 -2.0838 35 1 0.6842 -2.0464 -1.3869 36 1 3.1198 -3.8117 -0.7824 37 1 1.4443 -4.3227 -1.1472 38 1 0.7875 -6.8651 2.8375 39 1 0.7563 -11.0312 0.5688 40 1 0.0679 -12.5250 2.6154 41 1 -0.2166 -10.9342 4.7365 42 1 1.2557 -9.3969 -0.5892 43 1 1.8413 -7.4026 -1.9076 44 1 0.8541 -1.7930 1.6235 45 1 2.5848 -2.0189 2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972314414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:44 Heat of formation + Delta-G solvation = 122.578355 kcal Electronic energy + Delta-G solvation = -28749.866389 eV Core-core repulsion = 24770.562192 eV Total energy + Delta-G solvation = -3979.304197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.66277 -41.70507 -40.40069 -38.99878 -36.72831 -35.51613 -33.81906 -32.84136 -31.79757 -31.28192 -30.83919 -29.67710 -28.12778 -26.56586 -25.26026 -24.68553 -23.84113 -22.57645 -21.85770 -21.03008 -20.76355 -19.27786 -18.97935 -18.32742 -17.87663 -17.07743 -17.05531 -16.82610 -16.66928 -16.41143 -15.92294 -15.79479 -15.23102 -15.12545 -14.93207 -14.68515 -14.60596 -14.50748 -14.36931 -14.09410 -13.82903 -13.67751 -13.29402 -13.15344 -13.01419 -12.54826 -12.44154 -12.40137 -12.09153 -12.06036 -11.82838 -11.62942 -11.53812 -11.37128 -10.61055 -10.56357 -10.49942 -10.37596 -9.70892 -9.51487 -8.95850 -8.22010 -5.50639 -0.66670 -0.31542 1.02668 1.17070 1.32445 1.43385 1.55192 1.60599 1.74356 1.80103 2.43146 2.68459 2.88428 2.98145 3.22825 3.32505 3.52280 3.66666 3.79902 3.83246 3.87915 4.01650 4.06660 4.23932 4.32707 4.35416 4.40664 4.52155 4.53435 4.57625 4.68621 4.69062 4.73498 4.86180 4.91337 4.98966 5.00889 5.04574 5.16201 5.23967 5.34306 5.43309 5.57796 5.86131 5.99127 6.13156 6.35691 6.51525 6.56783 6.88378 6.93635 7.59347 7.98803 8.97502 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.002192 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.565957 B =12769.766217 C =13221.448593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.607 5.607 3 C -0.265 4.265 4 H 0.049 0.951 5 C -0.024 4.024 6 N -0.942 5.942 7 Si 0.946 3.054 8 H -0.280 1.280 9 H -0.309 1.309 10 H -0.251 1.251 11 C 0.167 3.833 12 H 0.085 0.915 13 C -0.149 4.149 14 C 0.114 3.886 15 N -0.590 5.590 16 C 0.569 3.431 17 O -0.581 6.581 18 C 0.101 3.899 19 C -0.138 4.138 20 C 0.194 3.806 21 N -0.348 5.348 22 C 0.055 3.945 23 C -0.256 4.256 24 C 0.057 3.943 25 N -0.345 5.345 26 C -0.153 4.153 27 C 0.136 3.864 28 N -0.470 5.470 29 C 0.096 3.904 30 H 0.014 0.986 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.226 0.774 40 H 0.189 0.811 41 H 0.215 0.785 42 H 0.196 0.804 43 H 0.224 0.776 44 H 0.053 0.947 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 -37.196 -5.641 37.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.330 5.330 3 C -0.394 4.394 4 H 0.067 0.933 5 C -0.221 4.221 6 N -0.585 5.585 7 Si 0.775 3.225 8 H -0.208 1.208 9 H -0.238 1.238 10 H -0.175 1.175 11 C 0.059 3.941 12 H 0.103 0.897 13 C -0.189 4.189 14 C -0.007 4.007 15 N -0.321 5.321 16 C 0.357 3.643 17 O -0.461 6.461 18 C -0.035 4.035 19 C -0.162 4.162 20 C 0.092 3.908 21 N -0.125 5.125 22 C -0.084 4.084 23 C -0.283 4.283 24 C -0.130 4.130 25 N -0.163 5.163 26 C -0.176 4.176 27 C -0.024 4.024 28 N -0.183 5.183 29 C -0.029 4.029 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.242 0.758 40 H 0.206 0.794 41 H 0.232 0.768 42 H 0.213 0.787 43 H 0.240 0.760 44 H 0.071 0.929 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.298 -34.964 -5.135 35.413 hybrid contribution -0.802 -0.469 0.647 1.132 sum -3.100 -35.433 -4.488 35.850 Atomic orbital electron populations 1.21365 0.83839 0.99792 0.98591 1.44078 1.01232 1.01558 1.86092 1.18702 1.03497 0.86752 1.30443 0.93293 1.25913 1.01038 0.94491 1.00652 1.70075 1.48484 0.98643 1.41337 0.85872 0.78384 0.77523 0.80720 1.20826 1.23832 1.17499 1.21599 0.96481 0.84130 0.91884 0.89673 1.23434 1.02363 0.94073 0.99028 1.22798 1.02564 0.97505 0.77879 1.48360 1.64942 1.06111 1.12650 1.17981 0.77448 0.84026 0.84818 1.90772 1.52276 1.85579 1.17501 1.20445 1.00122 0.92084 0.90888 1.21565 1.01375 0.91312 1.01913 1.17881 0.96964 0.84676 0.91238 1.46094 1.53639 1.05618 1.07176 1.23664 0.99786 0.81787 1.03133 1.22149 1.12050 1.02762 0.91345 1.24815 0.96418 0.89485 1.02311 1.77580 1.23641 1.24196 0.90907 1.22561 1.00715 1.04412 0.89883 1.23652 0.91578 0.84814 1.02321 1.67860 1.13654 1.27550 1.09250 1.22481 1.00893 0.80479 0.99019 0.96794 0.95346 0.91370 0.92769 0.88436 0.91217 0.89784 0.86115 0.85435 0.75751 0.79353 0.76846 0.78673 0.76007 0.92873 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.71 8.51 127.77 1.09 5.80 16 2 N -0.61 -28.50 2.61 -695.58 -1.81 -30.31 16 3 C -0.26 -14.95 9.87 84.04 0.83 -14.12 16 4 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 5 C -0.02 -1.41 5.26 84.86 0.45 -0.96 16 6 N -0.94 -58.93 13.97 21.65 0.30 -58.63 16 7 Si 0.95 45.62 25.14 68.60 1.72 47.34 16 8 H -0.28 -13.10 6.61 99.48 0.66 -12.44 16 9 H -0.31 -15.12 7.11 99.48 0.71 -14.42 16 10 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 11 C 0.17 6.35 3.45 46.28 0.16 6.51 16 12 H 0.09 3.28 7.95 -2.39 -0.02 3.26 16 13 C -0.15 -4.41 6.61 32.09 0.21 -4.19 16 14 C 0.11 2.87 5.94 86.86 0.52 3.38 16 15 N -0.59 -19.29 3.33 -814.82 -2.71 -22.00 16 16 C 0.57 19.83 7.84 86.88 0.68 20.51 16 17 O -0.58 -24.85 16.65 -3.76 -0.06 -24.91 16 18 C 0.10 2.71 6.72 41.86 0.28 2.99 16 19 C -0.14 -3.63 9.26 22.74 0.21 -3.42 16 20 C 0.19 3.55 6.73 38.35 0.26 3.81 16 21 N -0.35 -6.25 3.81 -186.86 -0.71 -6.96 16 22 C 0.06 0.49 10.86 83.39 0.91 1.40 16 23 C -0.26 -2.22 10.80 22.00 0.24 -1.99 16 24 C 0.06 0.82 12.02 85.26 1.02 1.84 16 25 N -0.35 -7.82 11.97 -56.98 -0.68 -8.50 16 26 C -0.15 -1.30 9.54 22.55 0.21 -1.09 16 27 C 0.14 1.28 11.17 84.75 0.95 2.23 16 28 N -0.47 -9.00 6.58 -185.12 -1.22 -10.22 16 29 C 0.10 3.63 6.51 86.73 0.56 4.20 16 30 H 0.01 0.62 8.07 -2.39 -0.02 0.60 16 31 H 0.03 1.32 2.58 -2.39 -0.01 1.31 16 32 H 0.07 2.52 6.13 -2.39 -0.01 2.50 16 33 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 34 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 2.12 6.15 -2.39 -0.01 2.11 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.12 2.61 5.87 -2.39 -0.01 2.60 16 38 H 0.13 4.14 7.38 -2.91 -0.02 4.12 16 39 H 0.23 -0.36 7.13 -2.91 -0.02 -0.38 16 40 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 41 H 0.22 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.20 -0.32 6.88 -2.91 -0.02 -0.34 16 43 H 0.22 -0.07 8.06 -2.91 -0.02 -0.09 16 44 H 0.05 2.21 7.06 -2.39 -0.02 2.20 16 45 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -84.84 366.13 4.39 -80.45 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.98 Total: 6.84 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 8.58 Total: 26.89 kcal Atomic # 7 Polarization: -129.79 SS G_CDS: -6.83 Total: -136.62 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.06 Total: -24.91 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.72 Total: 47.34 kcal Total: -84.84 4.39 -80.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972314414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.032 kcal (2) G-P(sol) polarization free energy of solvation -84.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds