Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 119.99822 * 2 1 4 4 H 1.08003 * 119.99813 * 153.84234 * 3 2 1 5 5 C 1.38807 * 120.00042 * 333.84963 * 3 2 1 6 6 N 1.31615 * 120.00148 * 359.69130 * 5 3 2 7 7 Si 1.86807 * 119.99865 * 179.69712 * 5 3 2 8 8 H 1.48500 * 109.46862 * 89.99482 * 7 5 3 9 9 H 1.48496 * 109.46816 * 209.99443 * 7 5 3 10 10 H 1.48497 * 109.46832 * 329.99322 * 7 5 3 11 11 C 1.46496 * 120.00346 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.64739 * 181.68375 * 11 2 1 13 13 C 1.55161 * 110.71698 * 305.01910 * 11 2 1 14 14 C 1.54909 * 101.58169 * 153.86569 * 13 11 2 15 15 N 1.47426 * 104.83232 * 322.98969 * 14 13 11 16 16 C 1.34773 * 125.64961 * 204.09496 * 15 14 13 17 17 O 1.21631 * 120.00146 * 174.65977 * 16 15 14 18 18 C 1.47152 * 120.00248 * 354.65422 * 16 15 14 19 19 C 1.37075 * 127.21133 * 352.50315 * 18 16 15 20 20 N 1.33302 * 106.37386 * 179.97438 * 19 18 16 21 21 N 1.28493 * 109.50161 * 0.02562 * 20 19 18 22 22 N 1.28713 * 110.67127 * 359.70941 * 21 20 19 23 23 C 1.40086 * 126.06240 * 180.28138 * 22 21 20 24 24 C 1.38865 * 120.06803 * 136.27652 * 23 22 21 25 25 C 1.38115 * 119.92880 * 179.72301 * 24 23 22 26 26 C 1.38282 * 120.06742 * 0.54707 * 25 24 23 27 27 C 1.38284 * 120.14181 * 359.72628 * 26 25 24 28 28 C 1.38111 * 120.06816 * 359.97438 * 27 26 25 29 29 C 1.47023 * 108.70508 * 24.12954 * 15 14 13 30 30 H 1.08994 * 109.47835 * 89.09411 * 1 2 3 31 31 H 1.09006 * 109.46654 * 209.09324 * 1 2 3 32 32 H 1.08998 * 109.47540 * 329.08877 * 1 2 3 33 33 H 0.97003 * 120.00182 * 180.02562 * 6 5 3 34 34 H 1.08994 * 111.00462 * 271.93894 * 13 11 2 35 35 H 1.08997 * 111.00719 * 35.79253 * 13 11 2 36 36 H 1.09001 * 110.37188 * 204.15278 * 14 13 11 37 37 H 1.09002 * 110.46033 * 81.87556 * 14 13 11 38 38 H 1.08001 * 126.81073 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.03674 * 359.97438 * 24 23 22 40 40 H 1.08002 * 119.96645 * 180.29435 * 25 24 23 41 41 H 1.08005 * 119.93281 * 179.74611 * 26 25 24 42 42 H 1.07998 * 119.97166 * 180.02562 * 27 26 25 43 43 H 1.08007 * 120.03896 * 179.97438 * 28 27 26 44 44 H 1.08998 * 109.88657 * 239.52536 * 29 15 14 45 45 H 1.09000 * 109.88283 * 118.35443 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1467 1.2339 0.4123 5 6 1.5621 2.3265 -0.5298 6 7 0.3494 2.2669 -1.0377 7 14 2.4929 3.9462 -0.5221 8 1 3.2801 4.0707 -1.7751 9 1 1.5279 5.0711 -0.4299 10 1 3.4105 3.9842 0.6448 11 6 2.1975 -1.2686 -0.0006 12 1 3.2726 -1.0917 0.0295 13 6 1.7508 -2.1610 1.1876 14 6 2.0639 -3.5785 0.6469 15 7 1.7324 -3.5167 -0.7883 16 6 1.4056 -4.5685 -1.5650 17 8 1.0557 -4.3892 -2.7160 18 6 1.4721 -5.9340 -1.0205 19 6 1.9763 -6.3182 0.1948 20 7 1.8294 -7.6414 0.2613 21 7 1.2789 -8.0667 -0.8191 22 7 1.0369 -7.0894 -1.6209 23 6 0.4387 -7.1876 -2.8838 24 6 -0.5386 -6.2770 -3.2635 25 6 -1.1224 -6.3730 -4.5115 26 6 -0.7427 -7.3814 -5.3782 27 6 0.2262 -8.2931 -5.0010 28 6 0.8182 -8.1987 -3.7567 29 6 1.8182 -2.1177 -1.2322 30 1 -0.3634 0.0162 -1.0274 31 1 -0.3633 -0.8981 0.4997 32 1 -0.3634 0.8817 0.5279 33 1 -0.0610 3.0638 -1.4082 34 1 2.3374 -1.9451 2.0805 35 1 0.6851 -2.0446 1.3846 36 1 1.4432 -4.3213 1.1479 37 1 3.1196 -3.8134 0.7826 38 1 2.4072 -5.6762 0.9489 39 1 -0.8389 -5.4922 -2.5851 40 1 -1.8791 -5.6623 -4.8092 41 1 -1.2036 -7.4569 -6.3521 42 1 0.5210 -9.0793 -5.6803 43 1 1.5746 -8.9113 -3.4624 44 1 0.8540 -1.7931 -1.6235 45 1 2.5847 -2.0190 -2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972446107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = 149.924633 kcal Electronic energy + Delta-G solvation = -29578.445952 eV Core-core repulsion = 25600.327579 eV Total energy + Delta-G solvation = -3978.118373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.69512 -39.84620 -39.48626 -37.57371 -35.15792 -34.66714 -32.34727 -31.53077 -31.04987 -30.21219 -29.85328 -28.02183 -26.13369 -25.20880 -24.15628 -23.58633 -22.71512 -22.10995 -21.74827 -20.02133 -19.33785 -18.14944 -17.29783 -17.18284 -16.88712 -16.60880 -15.94711 -15.62144 -15.26037 -14.96579 -14.83446 -14.26462 -14.14467 -13.73874 -13.51224 -13.34465 -13.21665 -12.89099 -12.67839 -12.41072 -12.28277 -12.07746 -11.95302 -11.63177 -11.49278 -11.45397 -10.94427 -10.92822 -10.88245 -10.65672 -10.46447 -10.37810 -10.16622 -9.96686 -9.92942 -9.68238 -9.25686 -8.97992 -8.62991 -8.53484 -6.87374 -5.85435 -3.35463 0.30189 1.04655 1.20024 1.80679 2.11278 2.92998 3.00356 3.32003 3.37322 3.38361 3.39345 4.09219 4.27078 4.38575 4.49740 4.55737 4.66713 4.76702 4.82478 4.92064 5.02194 5.13905 5.15671 5.20023 5.34136 5.34810 5.49681 5.63273 5.65295 5.68944 5.78955 5.86628 5.95387 6.00169 6.15151 6.20656 6.23341 6.25685 6.34001 6.51277 6.64088 6.74078 6.78653 7.33624 7.46915 7.65323 7.73445 7.96394 8.12394 8.29944 9.12110 9.71754 10.21464 11.19237 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.002788 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.755459 B =10039.481059 C =11260.215302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.264 4.264 4 H 0.071 0.929 5 C 0.009 3.991 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.153 4.153 14 C 0.085 3.915 15 N -0.591 5.591 16 C 0.596 3.404 17 O -0.529 6.529 18 C -0.055 4.055 19 C -0.007 4.007 20 N -0.268 5.268 21 N -0.056 5.056 22 N -0.210 5.210 23 C 0.102 3.898 24 C -0.054 4.054 25 C -0.108 4.108 26 C -0.098 4.098 27 C -0.117 4.117 28 C -0.089 4.089 29 C 0.089 3.911 30 H 0.022 0.978 31 H -0.004 1.004 32 H 0.059 0.941 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.210 0.790 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.078 0.922 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 -18.822 -2.564 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.306 5.306 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.190 4.190 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.100 0.900 13 C -0.193 4.193 14 C -0.038 4.038 15 N -0.324 5.324 16 C 0.381 3.619 17 O -0.406 6.406 18 C -0.187 4.187 19 C -0.166 4.166 20 N -0.132 5.132 21 N -0.035 5.035 22 N -0.001 5.001 23 C 0.013 3.987 24 C -0.075 4.075 25 C -0.127 4.127 26 C -0.117 4.117 27 C -0.136 4.136 28 C -0.109 4.109 29 C -0.034 4.034 30 H 0.041 0.959 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.227 0.773 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.790 -20.090 -3.035 20.333 hybrid contribution 0.577 2.042 -0.275 2.140 sum -0.213 -18.048 -3.310 18.350 Atomic orbital electron populations 1.20864 0.82238 0.96483 0.98691 1.43898 1.01988 0.99788 1.84925 1.19220 1.00151 0.86063 1.33863 0.91149 1.25194 0.96885 0.99022 0.97934 1.70056 1.13692 1.28316 1.42826 0.86215 0.79008 0.83104 0.77956 1.21253 1.21596 1.20403 1.21397 0.96624 0.85983 0.89793 0.90037 1.23378 1.03217 0.92526 1.00201 1.22802 1.00397 1.00023 0.80617 1.48214 1.66067 1.07550 1.10588 1.16263 0.79004 0.81509 0.85142 1.90868 1.47742 1.85011 1.16984 1.22149 1.09619 0.90409 0.96539 1.24488 1.02677 0.92947 0.96497 1.74908 1.14249 1.10513 1.13481 1.78355 1.14909 1.13504 0.96773 1.44722 1.37377 1.04651 1.13315 1.17522 0.98307 1.00918 0.81969 1.21070 0.92610 0.95987 0.97785 1.21061 1.00361 0.98506 0.92736 1.21380 0.96427 0.94142 0.99713 1.21011 0.97088 0.99971 0.95485 1.20987 0.99931 0.96869 0.93150 1.23083 1.02850 0.77223 1.00282 0.95932 0.98555 0.92253 0.93495 0.89934 0.90122 0.90391 0.90660 0.77330 0.84852 0.84575 0.85042 0.84732 0.84865 0.90359 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 7.82 59.84 0.47 4.20 16 2 N -0.59 -13.45 2.94 -171.39 -0.50 -13.95 16 3 C -0.26 -6.74 9.60 -15.06 -0.14 -6.89 16 4 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 5 C 0.01 0.23 5.30 -17.43 -0.09 0.14 16 6 N -0.90 -25.17 10.33 55.49 0.57 -24.60 16 7 Si 0.91 20.86 29.55 -169.99 -5.02 15.83 16 8 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 C 0.17 3.11 3.45 -66.09 -0.23 2.88 16 12 H 0.08 1.44 7.94 -51.93 -0.41 1.02 16 13 C -0.15 -2.16 6.61 -24.58 -0.16 -2.32 16 14 C 0.08 0.98 5.14 -2.53 -0.01 0.97 16 15 N -0.59 -8.85 3.33 -171.88 -0.57 -9.42 16 16 C 0.60 9.44 7.41 -12.64 -0.09 9.35 16 17 O -0.53 -9.67 13.57 5.25 0.07 -9.60 16 18 C -0.05 -0.78 6.72 -82.23 -0.55 -1.34 16 19 C -0.01 -0.09 10.33 -17.34 -0.18 -0.27 16 20 N -0.27 -3.82 12.34 30.48 0.38 -3.45 16 21 N -0.06 -0.83 12.94 60.35 0.78 -0.05 16 22 N -0.21 -3.03 3.49 -7.21 -0.03 -3.06 16 23 C 0.10 1.37 5.90 -83.62 -0.49 0.87 16 24 C -0.05 -0.70 7.44 -39.39 -0.29 -1.00 16 25 C -0.11 -1.12 10.04 -39.61 -0.40 -1.52 16 26 C -0.10 -0.84 10.04 -39.55 -0.40 -1.24 16 27 C -0.12 -1.01 10.04 -39.61 -0.40 -1.41 16 28 C -0.09 -0.98 9.81 -39.40 -0.39 -1.37 16 29 C 0.09 1.59 6.51 -3.06 -0.02 1.57 16 30 H 0.02 0.57 7.39 -51.93 -0.38 0.19 16 31 H 0.00 -0.08 6.08 -51.93 -0.32 -0.39 16 32 H 0.06 1.51 6.90 -51.93 -0.36 1.15 16 33 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.24 6.10 -51.93 -0.32 0.92 16 36 H 0.08 0.77 5.97 -51.93 -0.31 0.46 16 37 H 0.08 0.71 7.76 -51.93 -0.40 0.31 16 38 H 0.21 1.91 4.99 -52.49 -0.26 1.65 16 39 H 0.13 1.89 6.69 -52.49 -0.35 1.54 16 40 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 44 H 0.08 1.61 6.96 -51.93 -0.36 1.24 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -31.10 363.40 -7.79 -38.89 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.56 Total: 1.29 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -3.38 Total: 2.63 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.63 Total: -54.53 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.10 -7.79 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972446107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.814 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds