Wall clock time and date at job start Sat Apr 11 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00118 * 2 1 4 4 H 1.07997 * 120.00497 * 161.08963 * 3 2 1 5 5 C 1.38817 * 119.99508 * 340.81269 * 3 2 1 6 6 N 1.31621 * 120.00408 * 347.26285 * 5 3 2 7 7 Si 1.86800 * 119.99630 * 167.25861 * 5 3 2 8 8 H 1.48501 * 109.46756 * 90.00279 * 7 5 3 9 9 H 1.48502 * 109.47126 * 210.00114 * 7 5 3 10 10 H 1.48494 * 109.47307 * 330.00300 * 7 5 3 11 11 C 1.46500 * 119.99954 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.64207 * 181.68590 * 11 2 1 13 13 C 1.55154 * 110.72386 * 305.02188 * 11 2 1 14 14 C 1.54912 * 101.58171 * 153.86537 * 13 11 2 15 15 N 1.47423 * 104.83299 * 322.99089 * 14 13 11 16 16 C 1.34776 * 125.65323 * 204.09191 * 15 14 13 17 17 O 1.21605 * 120.00221 * 174.84626 * 16 15 14 18 18 C 1.47423 * 119.99247 * 354.84371 * 16 15 14 19 19 C 1.41370 * 126.41359 * 352.97219 * 18 16 15 20 20 N 1.30442 * 108.07996 * 179.85393 * 19 18 16 21 21 N 1.39934 * 108.91794 * 0.40528 * 20 19 18 22 22 C 1.39812 * 125.77589 * 179.77264 * 21 20 19 23 23 C 1.38939 * 119.68729 * 359.69104 * 22 21 20 24 24 C 1.38424 * 119.10499 * 179.75533 * 23 22 21 25 25 C 1.38788 * 118.48265 * 0.50324 * 24 23 22 26 26 C 1.38132 * 119.29319 * 359.73427 * 25 24 23 27 27 N 1.31893 * 120.84475 * 0.02562 * 26 25 24 28 28 C 1.34622 * 108.44530 * 359.73654 * 21 20 19 29 29 C 1.47027 * 108.70120 * 24.12862 * 15 14 13 30 30 H 1.08998 * 109.47280 * 84.79598 * 1 2 3 31 31 H 1.09008 * 109.47138 * 204.79128 * 1 2 3 32 32 H 1.08993 * 109.47388 * 324.79015 * 1 2 3 33 33 H 0.96989 * 120.00232 * 179.97438 * 6 5 3 34 34 H 1.08998 * 111.00807 * 271.94541 * 13 11 2 35 35 H 1.09009 * 110.99947 * 35.79532 * 13 11 2 36 36 H 1.08997 * 110.36347 * 204.15588 * 14 13 11 37 37 H 1.08992 * 110.36503 * 81.83016 * 14 13 11 38 38 H 1.08001 * 125.95224 * 359.97438 * 19 18 16 39 39 H 1.08003 * 120.44869 * 359.97246 * 23 22 21 40 40 H 1.07997 * 120.76149 * 180.24019 * 24 23 22 41 41 H 1.08005 * 120.35811 * 179.70892 * 25 24 23 42 42 H 1.08005 * 119.57788 * 180.02562 * 26 25 24 43 43 H 1.07997 * 126.31427 * 179.97438 * 28 21 20 44 44 H 1.08992 * 109.88281 * 239.51813 * 29 15 14 45 45 H 1.09003 * 109.88271 * 118.35747 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1859 1.2112 0.3031 5 6 1.5133 2.3546 -0.3951 6 7 0.3471 2.2961 -1.0025 7 14 2.3123 4.0105 -0.0647 8 1 3.1725 4.3836 -1.2162 9 1 1.2585 5.0405 0.1201 10 1 3.1408 3.9240 1.1646 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 0.0305 13 6 1.7507 -2.1601 1.1894 14 6 2.0638 -3.5780 0.6498 15 7 1.7324 -3.5174 -0.7854 16 6 1.4056 -4.5698 -1.5614 17 8 1.0591 -4.3916 -2.7133 18 6 1.4683 -5.9370 -1.0135 19 6 1.9803 -6.3122 0.2497 20 7 1.8583 -7.6055 0.3681 21 7 1.2797 -8.1154 -0.7995 22 6 0.9945 -9.4609 -1.0502 23 6 1.2977 -10.4189 -0.0906 24 6 1.0055 -11.7470 -0.3493 25 6 0.4273 -12.0722 -1.5684 26 6 0.1578 -11.0681 -2.4778 27 7 0.4432 -9.8105 -2.2010 28 6 1.0435 -7.0909 -1.6403 29 6 1.8182 -2.1187 -1.2304 30 1 -0.3634 0.0932 -1.0234 31 1 -0.3634 -0.9330 0.4309 32 1 -0.3634 0.8396 0.5925 33 1 -0.0976 3.1127 -1.2782 34 1 2.3372 -1.9434 2.0822 35 1 0.6849 -2.0435 1.3861 36 1 1.4431 -4.3204 1.1514 37 1 3.1199 -3.8109 0.7857 38 1 2.3976 -5.6441 0.9886 39 1 1.7521 -10.1309 0.8459 40 1 1.2262 -12.5132 0.3791 41 1 0.1910 -13.0995 -1.8037 42 1 -0.2924 -11.3159 -3.4278 43 1 0.6032 -7.1593 -2.6241 44 1 0.8541 -1.7945 -1.6220 45 1 2.5848 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972474213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:54 Heat of formation + Delta-G solvation = 139.006484 kcal Electronic energy + Delta-G solvation = -28471.454782 eV Core-core repulsion = 24492.862962 eV Total energy + Delta-G solvation = -3978.591820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.04878 -40.44849 -39.33730 -37.26773 -34.86018 -34.13154 -33.04218 -31.67020 -30.77726 -30.10359 -29.65368 -27.88383 -26.04337 -24.92652 -24.37988 -23.74153 -22.59205 -21.59143 -21.27406 -19.59744 -19.18795 -18.46179 -17.04661 -16.97225 -16.73805 -16.13076 -15.94158 -15.77709 -15.44077 -14.98682 -14.75169 -14.57879 -14.12459 -13.77016 -13.71629 -13.42382 -13.36056 -12.91387 -12.61026 -12.60050 -12.48681 -12.15071 -11.81913 -11.44437 -11.35856 -10.91566 -10.88908 -10.77100 -10.54201 -10.46421 -10.40184 -10.26996 -10.20875 -9.87324 -9.79512 -9.65615 -9.49278 -8.72254 -8.55525 -8.22716 -6.83997 -5.73758 -3.18612 0.15821 0.63969 1.57650 1.66246 1.95833 3.22961 3.26268 3.38432 3.44817 3.46369 3.54664 3.80662 4.03089 4.33682 4.42798 4.48094 4.51402 4.61278 4.73917 4.86827 4.99202 5.09634 5.19033 5.25183 5.27952 5.40334 5.45023 5.48689 5.59446 5.62804 5.81703 5.90807 5.91881 6.00820 6.05931 6.36269 6.39307 6.57427 6.60556 6.71888 6.86438 6.89300 6.93677 7.41265 7.42388 7.73035 7.82133 7.85876 8.34886 8.47567 9.20655 9.83470 10.30709 11.30754 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037571 B = 0.001951 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.071631 B =14349.389760 C =14758.098498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.259 4.259 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.154 4.154 14 C 0.091 3.909 15 N -0.607 5.607 16 C 0.603 3.397 17 O -0.548 6.548 18 C -0.272 4.272 19 C 0.090 3.910 20 N -0.290 5.290 21 N -0.319 5.319 22 C 0.368 3.632 23 C -0.161 4.161 24 C -0.052 4.052 25 C -0.186 4.186 26 C 0.135 3.865 27 N -0.505 5.505 28 C 0.151 3.849 29 C 0.089 3.911 30 H 0.029 0.971 31 H 0.001 0.999 32 H 0.048 0.952 33 H 0.253 0.747 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.211 0.789 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.169 0.831 43 H 0.196 0.804 44 H 0.074 0.926 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -29.112 3.824 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.032 4.032 15 N -0.340 5.340 16 C 0.391 3.609 17 O -0.426 6.426 18 C -0.286 4.286 19 C -0.100 4.100 20 N -0.107 5.107 21 N -0.094 5.094 22 C 0.141 3.859 23 C -0.183 4.183 24 C -0.079 4.079 25 C -0.206 4.206 26 C -0.023 4.023 27 N -0.218 5.218 28 C 0.005 3.995 29 C -0.036 4.036 30 H 0.048 0.952 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.227 0.773 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.186 0.814 43 H 0.213 0.787 44 H 0.092 0.908 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.240 -29.297 3.226 29.500 hybrid contribution 0.364 1.002 0.103 1.071 sum 1.604 -28.294 3.329 28.535 Atomic orbital electron populations 1.20827 0.82212 0.95638 0.99621 1.43961 1.02033 0.99885 1.84856 1.19248 0.96313 0.84599 1.38647 0.91011 1.25001 0.97513 0.98477 0.98695 1.70099 1.16511 1.26743 1.41741 0.86222 0.78258 0.83786 0.78029 1.21438 1.21616 1.20533 1.21344 0.96378 0.85906 0.90144 0.90274 1.23377 1.02989 0.92985 1.00032 1.22649 0.99742 0.99413 0.81397 1.48258 1.67716 1.07741 1.10271 1.16748 0.77240 0.82225 0.84667 1.90788 1.48601 1.85612 1.17633 1.20445 1.15989 0.94557 0.97643 1.25009 0.96074 0.92197 0.96681 1.77257 1.19198 1.11515 1.02727 1.45439 1.46637 1.03941 1.13357 1.17733 0.95393 0.81520 0.91228 1.21663 1.03182 0.92489 1.00949 1.21566 0.93983 0.95557 0.96746 1.22213 1.01794 1.01548 0.95084 1.22587 0.94606 0.85689 0.99434 1.66895 1.14171 1.22229 1.18500 1.23169 0.94421 0.85296 0.96604 1.22940 1.02490 0.78388 0.99756 0.95226 0.98074 0.93314 0.93645 0.90255 0.90296 0.90779 0.91288 0.77323 0.83151 0.83680 0.83864 0.81406 0.78707 0.90760 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.72 59.84 0.46 4.39 16 2 N -0.59 -14.17 2.94 -171.39 -0.50 -14.68 16 3 C -0.26 -6.89 9.67 -15.06 -0.15 -7.03 16 4 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 5 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 6 N -0.91 -26.23 10.47 55.49 0.58 -25.65 16 7 Si 0.91 21.55 29.57 -169.99 -5.03 16.53 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.17 3.33 3.44 -66.10 -0.23 3.10 16 12 H 0.08 1.49 7.91 -51.93 -0.41 1.08 16 13 C -0.15 -2.33 6.59 -24.58 -0.16 -2.49 16 14 C 0.09 1.15 5.10 -2.53 -0.01 1.14 16 15 N -0.61 -10.01 3.33 -171.79 -0.57 -10.58 16 16 C 0.60 10.48 7.83 -12.52 -0.10 10.38 16 17 O -0.55 -11.54 17.24 5.27 0.09 -11.45 16 18 C -0.27 -3.87 6.05 -105.05 -0.64 -4.50 16 19 C 0.09 1.05 10.27 -16.95 -0.17 0.88 16 20 N -0.29 -3.54 11.74 30.88 0.36 -3.18 16 21 N -0.32 -4.00 3.76 -11.74 -0.04 -4.05 16 22 C 0.37 4.01 7.54 -154.37 -1.16 2.85 16 23 C -0.16 -1.33 9.69 -39.25 -0.38 -1.71 16 24 C -0.05 -0.28 10.17 -39.31 -0.40 -0.68 16 25 C -0.19 -0.89 10.11 -39.42 -0.40 -1.29 16 26 C 0.13 0.89 11.18 -17.56 -0.20 0.70 16 27 N -0.50 -5.17 9.82 -12.29 -0.12 -5.30 16 28 C 0.15 2.03 10.87 -16.41 -0.18 1.85 16 29 C 0.09 1.72 6.51 -3.06 -0.02 1.70 16 30 H 0.03 0.79 7.37 -51.93 -0.38 0.41 16 31 H 0.00 0.02 6.13 -51.92 -0.32 -0.30 16 32 H 0.05 1.28 7.07 -51.93 -0.37 0.91 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.30 6.14 -51.92 -0.32 0.98 16 36 H 0.07 0.79 5.88 -51.93 -0.31 0.48 16 37 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 38 H 0.21 1.85 4.86 -52.49 -0.26 1.60 16 39 H 0.15 1.18 7.67 -52.48 -0.40 0.78 16 40 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 41 H 0.14 0.25 8.06 -52.48 -0.42 -0.17 16 42 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.20 2.48 8.03 -52.49 -0.42 2.06 16 44 H 0.07 1.67 7.06 -51.93 -0.37 1.30 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -34.33 370.49 -9.08 -43.41 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.61 Total: 0.13 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -3.82 Total: 9.22 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.30 Total: -63.42 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.33 -9.08 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972474213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.418 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds