Wall clock time and date at job start Sat Apr 11 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00118 * 2 1 4 4 H 1.07997 * 120.00497 * 161.08963 * 3 2 1 5 5 C 1.38817 * 119.99508 * 340.81269 * 3 2 1 6 6 N 1.31621 * 120.00408 * 347.26285 * 5 3 2 7 7 Si 1.86800 * 119.99630 * 167.25861 * 5 3 2 8 8 H 1.48501 * 109.46756 * 90.00279 * 7 5 3 9 9 H 1.48502 * 109.47126 * 210.00114 * 7 5 3 10 10 H 1.48494 * 109.47307 * 330.00300 * 7 5 3 11 11 C 1.46500 * 119.99954 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.64207 * 181.68590 * 11 2 1 13 13 C 1.55154 * 110.72386 * 305.02188 * 11 2 1 14 14 C 1.54912 * 101.58171 * 153.86537 * 13 11 2 15 15 N 1.47423 * 104.83299 * 322.99089 * 14 13 11 16 16 C 1.34776 * 125.65323 * 204.09191 * 15 14 13 17 17 O 1.21605 * 120.00221 * 174.84626 * 16 15 14 18 18 C 1.47423 * 119.99247 * 354.84371 * 16 15 14 19 19 C 1.41370 * 126.41359 * 352.97219 * 18 16 15 20 20 N 1.30442 * 108.07996 * 179.85393 * 19 18 16 21 21 N 1.39934 * 108.91794 * 0.40528 * 20 19 18 22 22 C 1.39812 * 125.77589 * 179.77264 * 21 20 19 23 23 C 1.38939 * 119.68729 * 359.69104 * 22 21 20 24 24 C 1.38424 * 119.10499 * 179.75533 * 23 22 21 25 25 C 1.38788 * 118.48265 * 0.50324 * 24 23 22 26 26 C 1.38132 * 119.29319 * 359.73427 * 25 24 23 27 27 N 1.31893 * 120.84475 * 0.02562 * 26 25 24 28 28 C 1.34622 * 108.44530 * 359.73654 * 21 20 19 29 29 C 1.47027 * 108.70120 * 24.12862 * 15 14 13 30 30 H 1.08998 * 109.47280 * 84.79598 * 1 2 3 31 31 H 1.09008 * 109.47138 * 204.79128 * 1 2 3 32 32 H 1.08993 * 109.47388 * 324.79015 * 1 2 3 33 33 H 0.96989 * 120.00232 * 179.97438 * 6 5 3 34 34 H 1.08998 * 111.00807 * 271.94541 * 13 11 2 35 35 H 1.09009 * 110.99947 * 35.79532 * 13 11 2 36 36 H 1.08997 * 110.36347 * 204.15588 * 14 13 11 37 37 H 1.08992 * 110.36503 * 81.83016 * 14 13 11 38 38 H 1.08001 * 125.95224 * 359.97438 * 19 18 16 39 39 H 1.08003 * 120.44869 * 359.97246 * 23 22 21 40 40 H 1.07997 * 120.76149 * 180.24019 * 24 23 22 41 41 H 1.08005 * 120.35811 * 179.70892 * 25 24 23 42 42 H 1.08005 * 119.57788 * 180.02562 * 26 25 24 43 43 H 1.07997 * 126.31427 * 179.97438 * 28 21 20 44 44 H 1.08992 * 109.88281 * 239.51813 * 29 15 14 45 45 H 1.09003 * 109.88271 * 118.35747 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1859 1.2112 0.3031 5 6 1.5133 2.3546 -0.3951 6 7 0.3471 2.2961 -1.0025 7 14 2.3123 4.0105 -0.0647 8 1 3.1725 4.3836 -1.2162 9 1 1.2585 5.0405 0.1201 10 1 3.1408 3.9240 1.1646 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 0.0305 13 6 1.7507 -2.1601 1.1894 14 6 2.0638 -3.5780 0.6498 15 7 1.7324 -3.5174 -0.7854 16 6 1.4056 -4.5698 -1.5614 17 8 1.0591 -4.3916 -2.7133 18 6 1.4683 -5.9370 -1.0135 19 6 1.9803 -6.3122 0.2497 20 7 1.8583 -7.6055 0.3681 21 7 1.2797 -8.1154 -0.7995 22 6 0.9945 -9.4609 -1.0502 23 6 1.2977 -10.4189 -0.0906 24 6 1.0055 -11.7470 -0.3493 25 6 0.4273 -12.0722 -1.5684 26 6 0.1578 -11.0681 -2.4778 27 7 0.4432 -9.8105 -2.2010 28 6 1.0435 -7.0909 -1.6403 29 6 1.8182 -2.1187 -1.2304 30 1 -0.3634 0.0932 -1.0234 31 1 -0.3634 -0.9330 0.4309 32 1 -0.3634 0.8396 0.5925 33 1 -0.0976 3.1127 -1.2782 34 1 2.3372 -1.9434 2.0822 35 1 0.6849 -2.0435 1.3861 36 1 1.4431 -4.3204 1.1514 37 1 3.1199 -3.8109 0.7857 38 1 2.3976 -5.6441 0.9886 39 1 1.7521 -10.1309 0.8459 40 1 1.2262 -12.5132 0.3791 41 1 0.1910 -13.0995 -1.8037 42 1 -0.2924 -11.3159 -3.4278 43 1 0.6032 -7.1593 -2.6241 44 1 0.8541 -1.7945 -1.6220 45 1 2.5848 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972474213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:53 Heat of formation + Delta-G solvation = 117.199171 kcal Electronic energy + Delta-G solvation = -28472.400418 eV Core-core repulsion = 24492.862962 eV Total energy + Delta-G solvation = -3979.537456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.95177 -41.20304 -40.56694 -38.79088 -36.58377 -34.93108 -33.65347 -33.39396 -31.78194 -31.28064 -30.81929 -29.28519 -28.06330 -26.07012 -25.08404 -24.78348 -24.13185 -22.56922 -22.17804 -20.83859 -20.65488 -19.43542 -18.93500 -17.73328 -17.49411 -17.45605 -16.92287 -16.84040 -16.59817 -16.36029 -15.93408 -15.60476 -15.24351 -15.03583 -14.87548 -14.61467 -14.38213 -14.23286 -14.02532 -14.00572 -13.69037 -13.28898 -13.05270 -12.98798 -12.72188 -12.47249 -12.37795 -12.35411 -12.16216 -12.07316 -11.75360 -11.66337 -11.36173 -11.06623 -11.02202 -10.77222 -10.60693 -10.43667 -9.68541 -9.42762 -8.83616 -7.80730 -5.27680 -0.54144 0.14965 0.65223 0.85075 1.03225 1.49957 1.50438 1.60214 1.94663 2.27695 2.53718 2.71426 3.08091 3.31193 3.32099 3.55547 3.64423 3.73836 3.86490 3.89093 3.98969 4.02495 4.10374 4.21553 4.31050 4.31904 4.37969 4.44928 4.53128 4.67790 4.69864 4.80943 4.91808 4.95477 5.06214 5.10349 5.18614 5.25265 5.30142 5.36260 5.41254 5.47915 5.66199 5.74696 5.80659 6.11900 6.31966 6.55099 6.77067 7.11115 7.15601 7.86739 8.30253 9.22830 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037571 B = 0.001951 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.071631 B =14349.389760 C =14758.098498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.602 5.602 3 C -0.260 4.260 4 H 0.084 0.916 5 C -0.060 4.060 6 N -0.944 5.944 7 Si 0.973 3.027 8 H -0.289 1.289 9 H -0.298 1.298 10 H -0.264 1.264 11 C 0.166 3.834 12 H 0.089 0.911 13 C -0.140 4.140 14 C 0.093 3.907 15 N -0.606 5.606 16 C 0.601 3.399 17 O -0.598 6.598 18 C -0.289 4.289 19 C 0.100 3.900 20 N -0.292 5.292 21 N -0.316 5.316 22 C 0.324 3.676 23 C -0.165 4.165 24 C -0.048 4.048 25 C -0.165 4.165 26 C 0.120 3.880 27 N -0.536 5.536 28 C 0.147 3.853 29 C 0.099 3.901 30 H -0.008 1.008 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.246 0.754 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.241 0.759 39 H 0.151 0.849 40 H 0.181 0.819 41 H 0.183 0.817 42 H 0.193 0.807 43 H 0.191 0.809 44 H 0.034 0.966 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 -32.651 6.267 33.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.323 5.323 3 C -0.390 4.390 4 H 0.102 0.898 5 C -0.254 4.254 6 N -0.591 5.591 7 Si 0.801 3.199 8 H -0.216 1.216 9 H -0.224 1.224 10 H -0.188 1.188 11 C 0.057 3.943 12 H 0.107 0.893 13 C -0.180 4.180 14 C -0.029 4.029 15 N -0.338 5.338 16 C 0.391 3.609 17 O -0.481 6.481 18 C -0.303 4.303 19 C -0.089 4.089 20 N -0.110 5.110 21 N -0.090 5.090 22 C 0.099 3.901 23 C -0.187 4.187 24 C -0.074 4.074 25 C -0.185 4.185 26 C -0.037 4.037 27 N -0.249 5.249 28 C -0.001 4.001 29 C -0.026 4.026 30 H 0.010 0.990 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.126 0.874 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.257 0.743 39 H 0.169 0.831 40 H 0.198 0.802 41 H 0.200 0.800 42 H 0.210 0.790 43 H 0.208 0.792 44 H 0.052 0.948 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.818 -32.913 5.731 33.527 hybrid contribution -0.134 1.813 -0.725 1.957 sum 2.684 -31.100 5.006 31.615 Atomic orbital electron populations 1.20458 0.82947 0.95867 0.97051 1.44157 1.01947 1.01179 1.85064 1.19693 0.96771 0.85561 1.37002 0.89841 1.25826 0.98297 1.01994 0.99308 1.70295 1.18199 1.26932 1.43658 0.85186 0.77112 0.79421 0.78177 1.21562 1.22439 1.18841 1.21593 0.96493 0.84500 0.91703 0.89273 1.23254 1.02498 0.93133 0.99072 1.22971 1.02710 0.98563 0.78626 1.48255 1.67397 1.06135 1.11998 1.17195 0.76172 0.83421 0.84080 1.90752 1.50946 1.86460 1.19941 1.20121 1.18275 0.92711 0.99203 1.25353 0.95326 0.92248 0.95945 1.77220 1.19278 1.11634 1.02823 1.45620 1.45863 1.04591 1.12915 1.18069 0.98176 0.81131 0.92713 1.21838 1.03129 0.93348 1.00394 1.22038 0.92723 0.94952 0.97680 1.22683 0.99082 1.02860 0.93901 1.23196 0.94489 0.85027 1.01012 1.66844 1.14946 1.24300 1.18825 1.23158 0.94338 0.85860 0.96759 1.22539 0.99815 0.80645 0.99633 0.98985 0.95249 0.95827 0.94450 0.87426 0.91654 0.87831 0.87447 0.74344 0.83101 0.80153 0.79977 0.78995 0.79205 0.94770 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.19 7.72 127.77 0.99 10.17 16 2 N -0.60 -29.45 2.94 -696.16 -2.05 -31.49 16 3 C -0.26 -13.91 9.67 84.03 0.81 -13.10 16 4 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 5 C -0.06 -3.35 5.12 84.86 0.43 -2.92 16 6 N -0.94 -56.92 10.47 21.65 0.23 -56.70 16 7 Si 0.97 44.95 29.57 68.60 2.03 46.98 16 8 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 9 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 C 0.17 6.26 3.44 46.18 0.16 6.42 16 12 H 0.09 3.19 7.91 -2.38 -0.02 3.18 16 13 C -0.14 -3.86 6.59 31.99 0.21 -3.65 16 14 C 0.09 2.02 5.10 86.86 0.44 2.47 16 15 N -0.61 -19.69 3.33 -815.68 -2.71 -22.40 16 16 C 0.60 21.28 7.83 86.66 0.68 21.96 16 17 O -0.60 -26.67 17.24 -4.05 -0.07 -26.74 16 18 C -0.29 -8.10 6.05 -20.14 -0.12 -8.23 16 19 C 0.10 2.12 10.27 85.67 0.88 3.00 16 20 N -0.29 -6.66 11.74 -56.22 -0.66 -7.32 16 21 N -0.32 -7.81 3.76 -191.05 -0.72 -8.53 16 22 C 0.32 6.86 7.54 132.76 1.00 7.86 16 23 C -0.16 -2.43 9.69 22.48 0.22 -2.22 16 24 C -0.05 -0.35 10.17 22.45 0.23 -0.12 16 25 C -0.17 -0.96 10.11 22.38 0.23 -0.73 16 26 C 0.12 1.34 11.18 84.66 0.95 2.29 16 27 N -0.54 -10.72 9.82 -192.79 -1.89 -12.61 16 28 C 0.15 4.05 10.87 84.21 0.92 4.96 16 29 C 0.10 3.96 6.51 86.73 0.56 4.53 16 30 H -0.01 -0.47 7.37 -2.39 -0.02 -0.49 16 31 H 0.03 1.28 6.13 -2.38 -0.01 1.27 16 32 H 0.02 1.27 7.07 -2.39 -0.02 1.25 16 33 H 0.25 14.52 8.31 -92.72 -0.77 13.75 16 34 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.06 2.01 6.14 -2.38 -0.01 2.00 16 36 H 0.10 1.75 5.88 -2.39 -0.01 1.73 16 37 H 0.11 1.65 7.75 -2.39 -0.02 1.63 16 38 H 0.24 3.21 4.86 -2.91 -0.01 3.20 16 39 H 0.15 2.11 7.67 -2.91 -0.02 2.08 16 40 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 41 H 0.18 -0.36 8.06 -2.91 -0.02 -0.38 16 42 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.19 5.22 8.03 -2.91 -0.02 5.20 16 44 H 0.03 1.63 7.06 -2.39 -0.02 1.61 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -80.93 370.49 3.76 -77.17 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.03 Total: 8.96 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 8.58 Total: 32.70 kcal Atomic # 7 Polarization: -131.26 SS G_CDS: -7.80 Total: -139.06 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.07 Total: -26.74 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -80.93 3.76 -77.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972474213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.369 kcal (2) G-P(sol) polarization free energy of solvation -80.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds