Wall clock time and date at job start Sat Apr 11 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 120.00005 * 2 1 4 4 H 1.08002 * 120.00228 * 203.25369 * 3 2 1 5 5 C 1.38820 * 120.00142 * 23.25103 * 3 2 1 6 6 N 1.31618 * 119.99361 * 13.77362 * 5 3 2 7 7 Si 1.86792 * 120.00261 * 193.77104 * 5 3 2 8 8 H 1.48506 * 109.47108 * 60.00211 * 7 5 3 9 9 H 1.48500 * 109.47079 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47122 * 300.00255 * 7 5 3 11 11 C 1.46500 * 119.99729 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.88151 * 183.88221 * 11 2 1 13 13 C 1.55148 * 111.00731 * 59.99954 * 11 2 1 14 14 C 1.54322 * 102.94464 * 206.42442 * 13 11 2 15 15 N 1.47022 * 107.26906 * 22.18956 * 14 13 11 16 16 C 1.34777 * 125.64655 * 181.02485 * 15 14 13 17 17 O 1.21609 * 119.99854 * 180.02562 * 16 15 14 18 18 C 1.47419 * 120.00125 * 0.02896 * 16 15 14 19 19 C 1.41370 * 126.40882 * 0.02562 * 18 16 15 20 20 N 1.30437 * 108.07977 * 179.97438 * 19 18 16 21 21 N 1.39934 * 108.92039 * 0.02562 * 20 19 18 22 22 C 1.39807 * 125.78235 * 179.97438 * 21 20 19 23 23 C 1.38950 * 119.68587 * 0.02562 * 22 21 20 24 24 C 1.38419 * 119.10670 * 179.97438 * 23 22 21 25 25 C 1.38794 * 118.48267 * 359.75528 * 24 23 22 26 26 C 1.38125 * 119.29332 * 0.50860 * 25 24 23 27 27 N 1.31897 * 120.84244 * 359.47538 * 26 25 24 28 28 C 1.34624 * 108.44358 * 0.26239 * 21 20 19 29 29 C 1.47426 * 108.70361 * 1.29063 * 15 14 13 30 30 H 1.09000 * 109.47207 * 275.15797 * 1 2 3 31 31 H 1.09004 * 109.47436 * 35.15492 * 1 2 3 32 32 H 1.09006 * 109.47332 * 155.15855 * 1 2 3 33 33 H 0.97006 * 119.99855 * 179.97438 * 6 5 3 34 34 H 1.08997 * 110.72282 * 88.05984 * 13 11 2 35 35 H 1.09008 * 110.72302 * 324.78472 * 13 11 2 36 36 H 1.09000 * 109.88363 * 262.77828 * 14 13 11 37 37 H 1.08999 * 110.01434 * 141.68130 * 14 13 11 38 38 H 1.07996 * 125.95749 * 359.97438 * 19 18 16 39 39 H 1.07999 * 120.44640 * 359.97438 * 23 22 21 40 40 H 1.08005 * 120.75939 * 180.02562 * 24 23 22 41 41 H 1.08006 * 120.35093 * 180.26846 * 25 24 23 42 42 H 1.08000 * 119.58204 * 179.75440 * 26 25 24 43 43 H 1.08006 * 126.31281 * 179.70413 * 28 21 20 44 44 H 1.08999 * 110.36766 * 94.48056 * 29 15 14 45 45 H 1.09004 * 110.36349 * 216.80390 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3693 5 6 1.5402 2.3393 0.4746 6 7 0.4242 2.2564 1.1674 7 14 2.3038 4.0088 0.1300 8 1 2.3839 4.2231 -1.3373 9 1 1.4662 5.0719 0.7410 10 1 3.6688 4.0585 0.7127 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0973 0.0685 13 6 1.8484 -2.1119 -1.2553 14 6 2.1063 -3.5582 -0.7826 15 7 2.0264 -3.5583 0.6855 16 6 2.2131 -4.6293 1.4821 17 8 2.1218 -4.5125 2.6892 18 6 2.5280 -5.9423 0.8904 19 6 2.6661 -6.2306 -0.4867 20 7 2.9459 -7.4987 -0.6087 21 7 2.9994 -8.0761 0.6648 22 6 3.2726 -9.4188 0.9428 23 6 3.5206 -10.3011 -0.1015 24 6 3.7902 -11.6277 0.1874 25 6 3.8073 -12.0253 1.5171 26 6 3.5462 -11.0949 2.5041 27 7 3.2925 -9.8373 2.1978 28 6 2.7371 -7.1212 1.5768 29 6 1.7020 -2.1944 1.1414 30 1 -0.3633 0.0924 1.0235 31 1 -0.3634 0.8402 -0.5917 32 1 -0.3634 -0.9326 -0.4317 33 1 -0.0016 3.0623 1.4994 34 1 2.5043 -1.8554 -2.0871 35 1 0.8025 -1.9774 -1.5317 36 1 3.0980 -3.8806 -1.0998 37 1 1.3500 -4.2260 -1.1951 38 1 2.5586 -5.5241 -1.2964 39 1 3.5033 -9.9565 -1.1249 40 1 3.9872 -12.3363 -0.6035 41 1 4.0186 -13.0520 1.7771 42 1 3.5543 -11.4000 3.5400 43 1 2.6997 -7.2529 2.6481 44 1 0.6263 -2.0867 1.2805 45 1 2.2297 -1.9687 2.0681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972474215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:57 Heat of formation + Delta-G solvation = 135.706285 kcal Electronic energy + Delta-G solvation = -28410.244108 eV Core-core repulsion = 24431.509181 eV Total energy + Delta-G solvation = -3978.734927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05015 -40.45286 -39.34543 -37.26517 -34.86934 -34.13224 -33.04521 -31.67948 -30.78039 -30.11804 -29.69501 -27.88363 -26.05232 -24.93493 -24.37528 -23.74951 -22.61329 -21.56726 -21.23995 -19.57855 -19.29501 -18.45746 -17.03454 -16.97800 -16.76092 -16.11991 -15.96090 -15.77151 -15.45225 -14.96425 -14.66415 -14.55513 -14.14634 -13.77890 -13.74365 -13.43529 -13.36011 -12.93615 -12.64737 -12.60831 -12.38912 -12.32720 -11.94191 -11.45125 -11.31573 -10.93076 -10.87664 -10.76458 -10.49134 -10.47170 -10.46229 -10.28643 -10.21325 -9.89032 -9.83261 -9.66428 -9.49847 -8.72879 -8.58026 -8.25624 -6.79263 -5.75444 -3.23277 0.15382 0.63583 1.56898 1.66130 1.95903 3.21270 3.25788 3.38834 3.44355 3.45103 3.53804 3.80181 4.02894 4.33376 4.42704 4.47742 4.51092 4.61842 4.73665 4.86232 4.99065 5.09452 5.18687 5.24550 5.28290 5.36900 5.44606 5.46975 5.59212 5.64647 5.81787 5.90581 5.91596 6.01758 6.06027 6.33269 6.39972 6.57228 6.60258 6.66672 6.78797 6.89763 6.93658 7.33318 7.42066 7.71083 7.78640 7.84273 8.35719 8.45529 9.19288 9.81787 10.30727 11.28828 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035987 B = 0.001931 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.876270 B =14499.751977 C =14840.658647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.096 3.904 15 N -0.608 5.608 16 C 0.604 3.396 17 O -0.549 6.549 18 C -0.273 4.273 19 C 0.088 3.912 20 N -0.290 5.290 21 N -0.319 5.319 22 C 0.368 3.632 23 C -0.161 4.161 24 C -0.052 4.052 25 C -0.186 4.186 26 C 0.135 3.865 27 N -0.505 5.505 28 C 0.152 3.848 29 C 0.090 3.910 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.003 0.997 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.211 0.789 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.169 0.831 43 H 0.196 0.804 44 H 0.069 0.931 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.576 -28.615 -4.360 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.195 4.195 14 C -0.028 4.028 15 N -0.341 5.341 16 C 0.392 3.608 17 O -0.427 6.427 18 C -0.287 4.287 19 C -0.101 4.101 20 N -0.107 5.107 21 N -0.094 5.094 22 C 0.141 3.859 23 C -0.183 4.183 24 C -0.079 4.079 25 C -0.206 4.206 26 C -0.023 4.023 27 N -0.218 5.218 28 C 0.005 3.995 29 C -0.034 4.034 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.186 0.814 43 H 0.213 0.787 44 H 0.088 0.912 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.503 -28.830 -3.722 29.585 hybrid contribution 0.258 0.978 -0.198 1.031 sum 5.761 -27.851 -3.920 28.710 Atomic orbital electron populations 1.20817 0.82468 0.95605 0.99718 1.43845 1.01862 0.99852 1.84850 1.19161 0.98765 0.85205 1.36010 0.91247 1.25066 0.97952 0.98679 0.97696 1.70063 1.19937 1.27558 1.37136 0.86304 0.78466 0.83624 0.77930 1.21019 1.21637 1.20865 1.21509 0.96417 0.85700 0.90163 0.90286 1.23253 1.02976 0.92560 1.00703 1.22342 1.00358 0.99340 0.80740 1.48238 1.69220 1.09531 1.07073 1.16732 0.76879 0.81733 0.85415 1.90787 1.53193 1.84961 1.13806 1.20437 1.19795 0.95202 0.93251 1.25104 0.94747 0.92987 0.97252 1.77261 1.25419 1.09832 0.98200 1.45449 1.52724 1.05545 1.05663 1.17733 0.96258 0.81751 0.90136 1.21666 1.02782 0.93336 1.00493 1.21569 0.94099 0.94942 0.97243 1.22212 1.02978 1.01842 0.93604 1.22583 0.93089 0.86099 1.00550 1.66891 1.16590 1.19448 1.18877 1.23171 0.92576 0.86377 0.97333 1.23142 1.01038 0.78921 1.00319 0.94830 0.93963 0.97884 0.93553 0.90441 0.90403 0.91464 0.91690 0.77248 0.83150 0.83676 0.83864 0.81408 0.78693 0.91245 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.75 7.56 59.85 0.45 4.20 16 2 N -0.58 -14.01 2.96 -170.90 -0.51 -14.51 16 3 C -0.26 -6.97 9.60 -15.06 -0.14 -7.12 16 4 H 0.07 1.79 7.87 -52.49 -0.41 1.38 16 5 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -25.96 10.77 55.49 0.60 -25.36 16 7 Si 0.91 21.51 29.58 -169.99 -5.03 16.49 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.17 3.36 3.55 -65.67 -0.23 3.13 16 12 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 13 C -0.15 -2.33 6.49 -24.90 -0.16 -2.49 16 14 C 0.10 1.21 4.99 -3.06 -0.02 1.20 16 15 N -0.61 -9.96 3.32 -171.65 -0.57 -10.54 16 16 C 0.60 10.40 7.85 -12.52 -0.10 10.30 16 17 O -0.55 -11.39 17.15 5.27 0.09 -11.30 16 18 C -0.27 -3.86 6.09 -105.05 -0.64 -4.50 16 19 C 0.09 1.04 10.44 -16.95 -0.18 0.86 16 20 N -0.29 -3.56 11.74 30.88 0.36 -3.20 16 21 N -0.32 -4.00 3.76 -11.73 -0.04 -4.04 16 22 C 0.37 4.00 7.54 -154.38 -1.16 2.84 16 23 C -0.16 -1.33 9.69 -39.25 -0.38 -1.71 16 24 C -0.05 -0.28 10.17 -39.31 -0.40 -0.68 16 25 C -0.19 -0.89 10.11 -39.42 -0.40 -1.28 16 26 C 0.13 0.88 11.18 -17.57 -0.20 0.69 16 27 N -0.51 -5.14 9.82 -12.29 -0.12 -5.27 16 28 C 0.15 2.03 10.86 -16.41 -0.18 1.85 16 29 C 0.09 1.73 6.46 -2.41 -0.02 1.72 16 30 H 0.03 0.88 7.33 -51.93 -0.38 0.49 16 31 H 0.04 1.07 7.38 -51.93 -0.38 0.69 16 32 H 0.00 0.06 6.37 -51.93 -0.33 -0.27 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.22 6.46 -51.92 -0.34 0.89 16 36 H 0.07 0.71 6.83 -51.93 -0.35 0.36 16 37 H 0.06 0.69 6.99 -51.93 -0.36 0.33 16 38 H 0.21 1.90 4.47 -52.49 -0.23 1.67 16 39 H 0.15 1.18 7.67 -52.49 -0.40 0.78 16 40 H 0.15 0.36 8.06 -52.48 -0.42 -0.07 16 41 H 0.14 0.25 8.06 -52.48 -0.42 -0.17 16 42 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.20 2.46 8.03 -52.48 -0.42 2.04 16 44 H 0.07 1.43 6.96 -51.93 -0.36 1.07 16 45 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -33.92 371.05 -9.10 -43.02 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.64 Total: 0.06 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -3.84 Total: 9.05 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.28 Total: -62.91 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.92 -9.10 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972474215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.731 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds