Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 120.00005 * 2 1 4 4 H 1.08002 * 120.00228 * 203.25369 * 3 2 1 5 5 C 1.38820 * 120.00142 * 23.25103 * 3 2 1 6 6 N 1.31618 * 119.99361 * 13.77362 * 5 3 2 7 7 Si 1.86792 * 120.00261 * 193.77104 * 5 3 2 8 8 H 1.48506 * 109.47108 * 60.00211 * 7 5 3 9 9 H 1.48500 * 109.47079 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47122 * 300.00255 * 7 5 3 11 11 C 1.46500 * 119.99729 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.88151 * 183.88221 * 11 2 1 13 13 C 1.55148 * 111.00731 * 59.99954 * 11 2 1 14 14 C 1.54322 * 102.94464 * 206.42442 * 13 11 2 15 15 N 1.47022 * 107.26906 * 22.18956 * 14 13 11 16 16 C 1.34777 * 125.64655 * 181.02485 * 15 14 13 17 17 O 1.21609 * 119.99854 * 180.02562 * 16 15 14 18 18 C 1.47419 * 120.00125 * 0.02896 * 16 15 14 19 19 C 1.41370 * 126.40882 * 0.02562 * 18 16 15 20 20 N 1.30437 * 108.07977 * 179.97438 * 19 18 16 21 21 N 1.39934 * 108.92039 * 0.02562 * 20 19 18 22 22 C 1.39807 * 125.78235 * 179.97438 * 21 20 19 23 23 C 1.38950 * 119.68587 * 0.02562 * 22 21 20 24 24 C 1.38419 * 119.10670 * 179.97438 * 23 22 21 25 25 C 1.38794 * 118.48267 * 359.75528 * 24 23 22 26 26 C 1.38125 * 119.29332 * 0.50860 * 25 24 23 27 27 N 1.31897 * 120.84244 * 359.47538 * 26 25 24 28 28 C 1.34624 * 108.44358 * 0.26239 * 21 20 19 29 29 C 1.47426 * 108.70361 * 1.29063 * 15 14 13 30 30 H 1.09000 * 109.47207 * 275.15797 * 1 2 3 31 31 H 1.09004 * 109.47436 * 35.15492 * 1 2 3 32 32 H 1.09006 * 109.47332 * 155.15855 * 1 2 3 33 33 H 0.97006 * 119.99855 * 179.97438 * 6 5 3 34 34 H 1.08997 * 110.72282 * 88.05984 * 13 11 2 35 35 H 1.09008 * 110.72302 * 324.78472 * 13 11 2 36 36 H 1.09000 * 109.88363 * 262.77828 * 14 13 11 37 37 H 1.08999 * 110.01434 * 141.68130 * 14 13 11 38 38 H 1.07996 * 125.95749 * 359.97438 * 19 18 16 39 39 H 1.07999 * 120.44640 * 359.97438 * 23 22 21 40 40 H 1.08005 * 120.75939 * 180.02562 * 24 23 22 41 41 H 1.08006 * 120.35093 * 180.26846 * 25 24 23 42 42 H 1.08000 * 119.58204 * 179.75440 * 26 25 24 43 43 H 1.08006 * 126.31281 * 179.70413 * 28 21 20 44 44 H 1.08999 * 110.36766 * 94.48056 * 29 15 14 45 45 H 1.09004 * 110.36349 * 216.80390 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3693 5 6 1.5402 2.3393 0.4746 6 7 0.4242 2.2564 1.1674 7 14 2.3038 4.0088 0.1300 8 1 2.3839 4.2231 -1.3373 9 1 1.4662 5.0719 0.7410 10 1 3.6688 4.0585 0.7127 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0973 0.0685 13 6 1.8484 -2.1119 -1.2553 14 6 2.1063 -3.5582 -0.7826 15 7 2.0264 -3.5583 0.6855 16 6 2.2131 -4.6293 1.4821 17 8 2.1218 -4.5125 2.6892 18 6 2.5280 -5.9423 0.8904 19 6 2.6661 -6.2306 -0.4867 20 7 2.9459 -7.4987 -0.6087 21 7 2.9994 -8.0761 0.6648 22 6 3.2726 -9.4188 0.9428 23 6 3.5206 -10.3011 -0.1015 24 6 3.7902 -11.6277 0.1874 25 6 3.8073 -12.0253 1.5171 26 6 3.5462 -11.0949 2.5041 27 7 3.2925 -9.8373 2.1978 28 6 2.7371 -7.1212 1.5768 29 6 1.7020 -2.1944 1.1414 30 1 -0.3633 0.0924 1.0235 31 1 -0.3634 0.8402 -0.5917 32 1 -0.3634 -0.9326 -0.4317 33 1 -0.0016 3.0623 1.4994 34 1 2.5043 -1.8554 -2.0871 35 1 0.8025 -1.9774 -1.5317 36 1 3.0980 -3.8806 -1.0998 37 1 1.3500 -4.2260 -1.1951 38 1 2.5586 -5.5241 -1.2964 39 1 3.5033 -9.9565 -1.1249 40 1 3.9872 -12.3363 -0.6035 41 1 4.0186 -13.0520 1.7771 42 1 3.5543 -11.4000 3.5400 43 1 2.6997 -7.2529 2.6481 44 1 0.6263 -2.0867 1.2805 45 1 2.2297 -1.9687 2.0681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972474215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = 114.449985 kcal Electronic energy + Delta-G solvation = -28411.165851 eV Core-core repulsion = 24431.509181 eV Total energy + Delta-G solvation = -3979.656670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.95001 -41.20443 -40.56512 -38.77481 -36.58048 -34.92868 -33.65427 -33.40249 -31.78933 -31.30473 -30.82667 -29.27032 -28.03456 -26.08915 -25.06975 -24.80220 -24.11843 -22.52096 -22.16304 -20.91509 -20.65916 -19.43665 -18.91115 -17.73973 -17.51581 -17.48015 -16.93058 -16.81087 -16.55462 -16.27235 -15.94686 -15.60627 -15.23517 -15.01629 -14.81935 -14.62091 -14.36275 -14.23035 -14.13749 -13.97882 -13.77590 -13.39888 -13.05306 -12.99443 -12.72168 -12.47790 -12.37907 -12.31739 -12.18391 -12.02126 -11.77920 -11.67087 -11.37352 -11.06284 -11.02251 -10.77270 -10.60880 -10.43609 -9.69540 -9.43964 -8.76491 -7.81441 -5.31472 -0.54180 0.14940 0.65087 0.85283 1.03469 1.49610 1.51295 1.58050 1.92787 2.28303 2.53467 2.71444 3.08190 3.30115 3.31539 3.54776 3.63243 3.73473 3.89030 3.95171 3.99004 4.02207 4.09770 4.21508 4.23186 4.32957 4.35796 4.43271 4.52593 4.69885 4.70366 4.83017 4.88432 4.95455 5.03499 5.10298 5.18294 5.24762 5.28361 5.34900 5.41360 5.47830 5.67467 5.73738 5.80799 6.12088 6.33692 6.54209 6.77001 7.10536 7.15794 7.86445 8.30707 9.20994 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035987 B = 0.001931 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.876270 B =14499.751977 C =14840.658647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.600 5.600 3 C -0.266 4.266 4 H 0.076 0.924 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.274 1.274 9 H -0.298 1.298 10 H -0.277 1.277 11 C 0.165 3.835 12 H 0.075 0.925 13 C -0.139 4.139 14 C 0.095 3.905 15 N -0.606 5.606 16 C 0.602 3.398 17 O -0.597 6.597 18 C -0.289 4.289 19 C 0.098 3.902 20 N -0.293 5.293 21 N -0.316 5.316 22 C 0.324 3.676 23 C -0.165 4.165 24 C -0.048 4.048 25 C -0.165 4.165 26 C 0.120 3.880 27 N -0.535 5.535 28 C 0.148 3.852 29 C 0.100 3.900 30 H -0.001 1.001 31 H 0.017 0.983 32 H 0.037 0.963 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.240 0.760 39 H 0.151 0.849 40 H 0.181 0.819 41 H 0.183 0.817 42 H 0.194 0.806 43 H 0.192 0.808 44 H 0.052 0.948 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 -32.024 -6.823 33.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.321 5.321 3 C -0.396 4.396 4 H 0.094 0.906 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.200 1.200 9 H -0.224 1.224 10 H -0.203 1.203 11 C 0.056 3.944 12 H 0.093 0.907 13 C -0.178 4.178 14 C -0.027 4.027 15 N -0.338 5.338 16 C 0.393 3.607 17 O -0.480 6.480 18 C -0.303 4.303 19 C -0.091 4.091 20 N -0.110 5.110 21 N -0.090 5.090 22 C 0.099 3.901 23 C -0.187 4.187 24 C -0.074 4.074 25 C -0.185 4.185 26 C -0.037 4.037 27 N -0.249 5.249 28 C 0.000 4.000 29 C -0.025 4.025 30 H 0.017 0.983 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.255 0.745 39 H 0.168 0.832 40 H 0.198 0.802 41 H 0.200 0.800 42 H 0.210 0.790 43 H 0.209 0.791 44 H 0.071 0.929 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.041 -32.310 -6.248 33.653 hybrid contribution -0.135 1.751 0.637 1.869 sum 6.906 -30.559 -5.610 31.828 Atomic orbital electron populations 1.20507 0.82707 0.96195 0.97450 1.44030 1.02021 1.00865 1.85154 1.19553 0.99024 0.86338 1.34675 0.90583 1.25854 0.98733 1.02103 0.98173 1.70246 1.21528 1.27785 1.38841 0.85290 0.77511 0.79329 0.77978 1.20014 1.22446 1.20283 1.21675 0.95720 0.84497 0.92481 0.90671 1.23104 1.03295 0.92648 0.98782 1.22638 1.03458 0.98512 0.78079 1.48217 1.68800 1.08001 1.08800 1.17151 0.75956 0.82719 0.84875 1.90753 1.55432 1.85788 1.16007 1.20120 1.22000 0.93645 0.94581 1.25423 0.93892 0.93153 0.96591 1.77222 1.25535 1.09935 0.98348 1.45629 1.51838 1.06233 1.05302 1.18066 0.99321 0.81400 0.91293 1.21838 1.02733 0.94320 0.99853 1.22039 0.92563 0.94147 0.98658 1.22683 0.99893 1.03137 0.92811 1.23197 0.92669 0.85341 1.02495 1.66842 1.17524 1.21438 1.19061 1.23172 0.92452 0.86820 0.97567 1.22740 0.99451 0.81142 0.99194 0.98251 0.96377 0.94473 0.94302 0.88129 0.90691 0.88169 0.88405 0.74451 0.83150 0.80177 0.79976 0.78960 0.79087 0.92928 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.55 7.56 127.77 0.97 9.52 16 2 N -0.60 -29.11 2.96 -694.59 -2.05 -31.17 16 3 C -0.27 -14.28 9.60 84.04 0.81 -13.48 16 4 H 0.08 3.90 7.87 -2.91 -0.02 3.88 16 5 C -0.05 -2.97 5.08 84.86 0.43 -2.54 16 6 N -0.94 -55.92 10.77 21.65 0.23 -55.69 16 7 Si 0.97 44.89 29.58 68.60 2.03 46.92 16 8 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 C 0.17 6.38 3.55 46.46 0.16 6.54 16 12 H 0.08 2.94 7.96 -2.39 -0.02 2.93 16 13 C -0.14 -3.80 6.49 31.78 0.21 -3.59 16 14 C 0.09 2.10 4.99 86.73 0.43 2.53 16 15 N -0.61 -19.57 3.32 -815.22 -2.71 -22.28 16 16 C 0.60 21.05 7.85 86.66 0.68 21.73 16 17 O -0.60 -26.11 17.15 -4.06 -0.07 -26.18 16 18 C -0.29 -8.06 6.09 -20.14 -0.12 -8.18 16 19 C 0.10 2.10 10.44 85.67 0.89 2.99 16 20 N -0.29 -6.72 11.74 -56.23 -0.66 -7.38 16 21 N -0.32 -7.78 3.76 -191.04 -0.72 -8.50 16 22 C 0.32 6.82 7.54 132.77 1.00 7.82 16 23 C -0.17 -2.44 9.69 22.48 0.22 -2.22 16 24 C -0.05 -0.35 10.17 22.45 0.23 -0.12 16 25 C -0.17 -0.94 10.11 22.38 0.23 -0.71 16 26 C 0.12 1.32 11.18 84.66 0.95 2.27 16 27 N -0.54 -10.58 9.82 -192.80 -1.89 -12.48 16 28 C 0.15 4.04 10.86 84.21 0.91 4.95 16 29 C 0.10 3.98 6.46 86.93 0.56 4.54 16 30 H 0.00 -0.05 7.33 -2.39 -0.02 -0.06 16 31 H 0.02 0.93 7.38 -2.39 -0.02 0.91 16 32 H 0.04 1.51 6.37 -2.38 -0.02 1.49 16 33 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 2.14 6.46 -2.38 -0.02 2.12 16 36 H 0.10 1.66 6.83 -2.39 -0.02 1.64 16 37 H 0.10 1.64 6.99 -2.39 -0.02 1.62 16 38 H 0.24 3.33 4.47 -2.91 -0.01 3.32 16 39 H 0.15 2.11 7.67 -2.91 -0.02 2.09 16 40 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 41 H 0.18 -0.38 8.06 -2.91 -0.02 -0.40 16 42 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 43 H 0.19 5.16 8.03 -2.91 -0.02 5.14 16 44 H 0.05 2.26 6.96 -2.39 -0.02 2.24 16 45 H 0.04 1.94 8.03 -2.38 -0.02 1.93 16 Total: -1.00 -79.20 371.05 3.74 -75.47 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.03 Total: 9.24 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: 8.56 Total: 32.05 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -7.80 Total: -137.49 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.07 Total: -26.18 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -79.20 3.74 -75.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972474215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.917 kcal (2) G-P(sol) polarization free energy of solvation -79.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds