Wall clock time and date at job start Sat Apr 11 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99293 * 2 1 4 4 H 1.08007 * 119.99452 * 203.31199 * 3 2 1 5 5 C 1.38811 * 120.00442 * 23.30724 * 3 2 1 6 6 N 1.31617 * 119.99762 * 14.02138 * 5 3 2 7 7 Si 1.86799 * 119.99715 * 194.01637 * 5 3 2 8 8 H 1.48492 * 109.47463 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46647 * 120.00585 * 7 5 3 10 10 H 1.48506 * 109.47120 * 239.99926 * 7 5 3 11 11 C 1.46495 * 119.99993 * 179.97438 * 2 1 3 12 12 H 1.09009 * 110.91340 * 182.44632 * 11 2 1 13 13 C 1.55150 * 111.00570 * 306.34711 * 11 2 1 14 14 C 1.54326 * 102.93976 * 153.57845 * 13 11 2 15 15 N 1.47285 * 107.30601 * 337.81753 * 14 13 11 16 16 C 1.34780 * 125.79249 * 178.92282 * 15 14 13 17 17 O 1.21620 * 120.00063 * 180.02562 * 16 15 14 18 18 C 1.47288 * 119.99785 * 0.02562 * 16 15 14 19 19 C 1.37956 * 126.81353 * 359.68469 * 18 16 15 20 20 N 1.34161 * 107.89198 * 179.83448 * 19 18 16 21 21 H 0.96998 * 125.16378 * 180.19628 * 20 19 18 22 22 N 1.39774 * 109.66817 * 0.44156 * 20 19 18 23 23 C 1.31356 * 109.08120 * 359.72579 * 22 20 19 24 24 C 1.48299 * 126.51017 * 179.97438 * 23 22 20 25 25 C 1.39805 * 120.54253 * 325.02411 * 24 23 22 26 26 C 1.38404 * 118.31019 * 179.97438 * 25 24 23 27 27 C 1.38314 * 119.28527 * 359.97438 * 26 25 24 28 28 N 1.31888 * 121.04274 * 359.97438 * 27 26 25 29 29 C 1.31748 * 121.85526 * 359.73080 * 28 27 26 30 30 C 1.47423 * 108.56218 * 358.92694 * 15 14 13 31 31 H 1.08999 * 109.47169 * 275.16686 * 1 2 3 32 32 H 1.08996 * 109.47374 * 35.17403 * 1 2 3 33 33 H 1.09007 * 109.46803 * 155.17286 * 1 2 3 34 34 H 0.97002 * 119.99606 * 180.02562 * 6 5 3 35 35 H 1.09003 * 110.72628 * 271.93943 * 13 11 2 36 36 H 1.08999 * 110.71850 * 35.04294 * 13 11 2 37 37 H 1.09002 * 109.88467 * 97.22856 * 14 13 11 38 38 H 1.09002 * 109.88342 * 218.23434 * 14 13 11 39 39 H 1.08004 * 126.05426 * 359.96733 * 19 18 16 40 40 H 1.08004 * 120.83979 * 359.97438 * 25 24 23 41 41 H 1.07997 * 120.35332 * 180.02562 * 26 25 24 42 42 H 1.08003 * 119.48162 * 179.97438 * 27 26 25 43 43 H 1.07997 * 119.70391 * 180.26384 * 29 28 27 44 44 H 1.08994 * 110.36205 * 265.26324 * 30 15 14 45 45 H 1.08995 * 110.36690 * 143.04359 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1860 0.0000 4 1 3.1635 1.2242 -0.3702 5 6 1.5404 2.3391 0.4756 6 7 0.4276 2.2555 1.1735 7 14 2.3001 4.0092 0.1252 8 1 3.5392 3.8317 -0.6737 9 1 1.3351 4.8418 -0.6371 10 1 2.6294 4.6821 1.4075 11 6 2.1975 -1.2687 0.0006 12 1 3.2731 -1.0970 0.0440 13 6 1.7321 -2.1790 1.1676 14 6 2.0382 -3.5976 0.6425 15 7 2.0998 -3.5171 -0.8269 16 6 2.3657 -4.5410 -1.6620 17 8 2.3905 -4.3550 -2.8636 18 6 2.6261 -5.8853 -1.1193 19 6 2.6394 -6.2515 0.2107 20 7 2.9125 -7.5635 0.2742 21 1 2.9795 -8.0812 1.0918 22 7 3.0915 -8.0698 -1.0162 23 6 2.9290 -7.0981 -1.8851 24 6 3.0329 -7.2072 -3.3604 25 6 3.9593 -8.0757 -3.9451 26 6 4.0165 -8.1413 -5.3264 27 6 3.1630 -7.3532 -6.0771 28 7 2.2983 -6.5436 -5.4972 29 6 2.2032 -6.4514 -4.1864 30 6 1.8217 -2.1274 -1.2328 31 1 -0.3633 0.0925 1.0235 32 1 -0.3634 0.8400 -0.5920 33 1 -0.3633 -0.9328 -0.4315 34 1 0.0018 3.0613 1.5056 35 1 2.3047 -1.9705 2.0714 36 1 0.6650 -2.0549 1.3515 37 1 2.9958 -3.9396 1.0350 38 1 1.2473 -4.2837 0.9455 39 1 2.4594 -5.5983 1.0517 40 1 4.6137 -8.6801 -3.3344 41 1 4.7195 -8.8013 -5.8128 42 1 3.2052 -7.4016 -7.1552 43 1 1.4797 -5.7800 -3.7482 44 1 0.7651 -2.0062 -1.4716 45 1 2.4375 -1.8517 -2.0888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972559601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:08 Heat of formation + Delta-G solvation = 122.145605 kcal Electronic energy + Delta-G solvation = -29174.232859 eV Core-core repulsion = 25194.909896 eV Total energy + Delta-G solvation = -3979.322962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51466 -39.87235 -39.43369 -37.35469 -34.90826 -33.57711 -32.03023 -31.94144 -30.64069 -30.24674 -29.73646 -27.72577 -26.08234 -24.50723 -24.26448 -23.60407 -22.72527 -21.61976 -20.66687 -19.84602 -19.36102 -17.66427 -17.12933 -17.05042 -16.61778 -16.21689 -15.95304 -15.60774 -15.19365 -14.96701 -14.53358 -14.30995 -13.91911 -13.79451 -13.46268 -13.41251 -13.13812 -13.07878 -12.69069 -12.49554 -12.41127 -12.02815 -11.91950 -11.33741 -11.20322 -10.99029 -10.80030 -10.60802 -10.53027 -10.52524 -10.27696 -9.95119 -9.91879 -9.83234 -9.64515 -9.48533 -9.14233 -8.66350 -8.62881 -8.35306 -6.84096 -5.80015 -3.27540 0.69567 1.24921 1.28962 2.08680 2.34671 3.15887 3.34947 3.41956 3.43303 3.45360 3.82481 4.00185 4.29850 4.44090 4.56566 4.72041 4.79856 4.82912 4.91477 4.92663 5.03654 5.16323 5.19970 5.27160 5.39461 5.41236 5.56150 5.69768 5.77860 5.84333 5.87026 5.95227 6.06834 6.14553 6.27299 6.31989 6.48400 6.59720 6.67224 6.73708 6.76369 6.83145 7.16087 7.30072 7.65272 7.74804 7.75852 7.98888 8.31173 8.38560 9.15206 9.77575 10.25853 11.24422 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.002583 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.764008 B =10836.576962 C =11960.577628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.094 3.906 15 N -0.607 5.607 16 C 0.601 3.399 17 O -0.540 6.540 18 C -0.271 4.271 19 C 0.098 3.902 20 N -0.465 5.465 21 H 0.444 0.556 22 N -0.284 5.284 23 C 0.175 3.825 24 C -0.083 4.083 25 C -0.046 4.046 26 C -0.189 4.189 27 C 0.108 3.892 28 N -0.487 5.487 29 C 0.169 3.831 30 C 0.087 3.913 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.003 0.997 34 H 0.253 0.747 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.201 0.799 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.176 0.824 44 H 0.070 0.930 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.887 -22.460 -1.730 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.192 4.192 14 C -0.030 4.030 15 N -0.340 5.340 16 C 0.391 3.609 17 O -0.419 6.419 18 C -0.286 4.286 19 C -0.052 4.052 20 N -0.170 5.170 21 H 0.289 0.711 22 N -0.105 5.105 23 C 0.006 3.994 24 C -0.087 4.087 25 C -0.073 4.073 26 C -0.209 4.209 27 C -0.049 4.049 28 N -0.196 5.196 29 C 0.011 3.989 30 C -0.037 4.037 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.217 0.783 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.193 0.807 44 H 0.088 0.912 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.496 -22.942 -2.682 23.532 hybrid contribution 0.826 0.971 1.128 1.702 sum 5.321 -21.971 -1.554 22.660 Atomic orbital electron populations 1.20823 0.82450 0.95731 0.99651 1.43812 1.01854 0.99857 1.84918 1.19254 0.98735 0.85278 1.35694 0.91203 1.25020 0.97934 0.98612 0.97772 1.70075 1.20198 1.27310 1.37227 0.86180 0.78629 0.84146 0.77553 1.20206 1.21525 1.21725 1.21414 0.96443 0.85854 0.90026 0.90340 1.23246 1.03060 0.92286 1.00622 1.22387 0.99995 0.99844 0.80762 1.48313 1.69086 1.09769 1.06801 1.16746 0.76694 0.82074 0.85394 1.90750 1.53637 1.83535 1.13971 1.21309 1.20557 0.95074 0.91646 1.23878 0.95827 0.86310 0.99152 1.45971 1.55735 1.07438 1.07890 0.71119 1.77289 1.24591 1.21107 0.87521 1.21548 0.96130 0.89332 0.92439 1.18699 1.00435 1.00901 0.88635 1.21591 0.95698 0.94973 0.95034 1.21994 1.02095 1.02680 0.94148 1.22937 0.90516 0.90821 1.00661 1.67865 1.21052 1.18624 1.12031 1.23491 0.95561 0.91973 0.87902 1.23025 1.01408 0.78777 1.00468 0.94776 0.93977 0.97852 0.93707 0.90410 0.90305 0.91707 0.91807 0.78300 0.84792 0.84687 0.82800 0.80700 0.91199 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.64 7.60 59.85 0.46 4.10 16 2 N -0.58 -13.69 2.96 -171.03 -0.51 -14.19 16 3 C -0.26 -6.83 9.60 -15.06 -0.14 -6.98 16 4 H 0.07 1.81 7.86 -52.48 -0.41 1.40 16 5 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 6 N -0.90 -25.31 10.79 55.49 0.60 -24.71 16 7 Si 0.91 21.29 29.58 -169.99 -5.03 16.26 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.17 3.24 3.54 -65.79 -0.23 3.01 16 12 H 0.08 1.50 7.96 -51.92 -0.41 1.09 16 13 C -0.15 -2.27 6.51 -24.90 -0.16 -2.43 16 14 C 0.09 1.08 5.01 -2.92 -0.01 1.06 16 15 N -0.61 -9.00 3.34 -171.63 -0.57 -9.57 16 16 C 0.60 9.37 7.72 -12.58 -0.10 9.27 16 17 O -0.54 -9.96 12.74 5.26 0.07 -9.89 16 18 C -0.27 -3.49 6.24 -102.95 -0.64 -4.13 16 19 C 0.10 0.87 10.51 -16.64 -0.17 0.69 16 20 N -0.46 -3.75 7.20 30.81 0.22 -3.53 16 21 H 0.44 1.81 8.96 -182.85 -1.64 0.17 16 22 N -0.28 -3.29 12.64 34.58 0.44 -2.85 16 23 C 0.18 2.31 6.96 -80.56 -0.56 1.74 16 24 C -0.08 -1.12 5.74 -104.76 -0.60 -1.72 16 25 C -0.05 -0.51 9.92 -38.93 -0.39 -0.90 16 26 C -0.19 -1.83 10.10 -39.49 -0.40 -2.23 16 27 C 0.11 1.20 11.17 -17.50 -0.20 1.00 16 28 N -0.49 -7.10 10.35 -12.96 -0.13 -7.23 16 29 C 0.17 2.53 8.97 -17.18 -0.15 2.38 16 30 C 0.09 1.53 6.46 -2.53 -0.02 1.52 16 31 H 0.03 0.85 7.33 -51.93 -0.38 0.46 16 32 H 0.04 1.06 7.39 -51.93 -0.38 0.68 16 33 H 0.00 0.06 6.34 -51.93 -0.33 -0.27 16 34 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.27 7.08 -51.93 -0.37 0.90 16 37 H 0.06 0.60 6.85 -51.93 -0.36 0.24 16 38 H 0.06 0.59 7.05 -51.93 -0.37 0.22 16 39 H 0.20 1.17 4.46 -52.48 -0.23 0.94 16 40 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 43 H 0.18 2.84 5.69 -52.49 -0.30 2.54 16 44 H 0.07 1.30 6.33 -51.93 -0.33 0.97 16 45 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -33.45 363.98 -9.60 -43.04 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.75 Total: 0.73 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -3.41 Total: 6.45 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.05 Total: -62.08 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.45 -9.60 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972559601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.188 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds