Wall clock time and date at job start Sat Apr 11 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 119.99659 * 2 1 4 4 H 1.08004 * 119.99828 * 203.24719 * 3 2 1 5 5 C 1.38820 * 120.00312 * 23.24157 * 3 2 1 6 6 N 1.31614 * 119.99604 * 13.76519 * 5 3 2 7 7 Si 1.86799 * 119.99961 * 193.75862 * 5 3 2 8 8 H 1.48504 * 109.46827 * 60.00292 * 7 5 3 9 9 H 1.48496 * 109.46900 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47210 * 300.00508 * 7 5 3 11 11 C 1.46491 * 120.00108 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88755 * 183.88195 * 11 2 1 13 13 C 1.55157 * 111.00496 * 59.99953 * 11 2 1 14 14 C 1.54321 * 102.94523 * 206.42243 * 13 11 2 15 15 N 1.47021 * 107.26932 * 22.19550 * 14 13 11 16 16 C 1.34780 * 125.64910 * 181.02351 * 15 14 13 17 17 O 1.21517 * 120.00162 * 180.02562 * 16 15 14 18 18 C 1.48181 * 119.99836 * 0.02562 * 16 15 14 19 19 C 1.39132 * 119.69133 * 180.02562 * 18 16 15 20 20 C 1.39270 * 118.97203 * 179.70283 * 19 18 16 21 21 N 1.39968 * 120.82022 * 180.25538 * 20 19 18 22 22 C 1.37156 * 126.48495 * 180.02562 * 21 20 19 23 23 C 1.34625 * 106.82938 * 180.02562 * 22 21 20 24 24 N 1.34155 * 108.21399 * 359.97438 * 23 22 21 25 25 C 1.30492 * 109.36140 * 359.72928 * 24 23 22 26 26 C 1.39267 * 118.36218 * 0.27969 * 20 19 18 27 27 C 1.38338 * 119.27527 * 359.97438 * 26 20 19 28 28 N 1.31595 * 120.98167 * 0.02562 * 27 26 20 29 29 C 1.47431 * 108.70482 * 1.28507 * 15 14 13 30 30 H 1.08995 * 109.47446 * 275.16243 * 1 2 3 31 31 H 1.09002 * 109.47013 * 35.16333 * 1 2 3 32 32 H 1.09002 * 109.46951 * 155.16288 * 1 2 3 33 33 H 0.96999 * 119.99704 * 180.02562 * 6 5 3 34 34 H 1.09008 * 110.71453 * 88.05991 * 13 11 2 35 35 H 1.09002 * 110.87483 * 324.86167 * 13 11 2 36 36 H 1.09000 * 109.88679 * 262.78011 * 14 13 11 37 37 H 1.08999 * 110.01085 * 141.68199 * 14 13 11 38 38 H 1.07994 * 120.51233 * 359.97438 * 19 18 16 39 39 H 1.07998 * 126.58467 * 359.97438 * 22 21 20 40 40 H 1.08003 * 125.89205 * 179.97438 * 23 22 21 41 41 H 1.07997 * 125.71780 * 180.27032 * 25 24 23 42 42 H 1.08000 * 120.36418 * 179.97438 * 26 20 19 43 43 H 1.08007 * 119.51146 * 180.02562 * 27 26 20 44 44 H 1.08998 * 110.36374 * 94.48226 * 29 15 14 45 45 H 1.08999 * 110.36523 * 216.80654 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3692 5 6 1.5401 2.3394 0.4744 6 7 0.4239 2.2566 1.1669 7 14 2.3040 4.0089 0.1300 8 1 2.3845 4.2231 -1.3373 9 1 1.4656 5.0721 0.7397 10 1 3.6688 4.0585 0.7131 11 6 2.1976 -1.2686 0.0006 12 1 3.2718 -1.0971 0.0694 13 6 1.8484 -2.1130 -1.2535 14 6 2.1065 -3.5588 -0.7796 15 7 2.0265 -3.5577 0.6885 16 6 2.2132 -4.6280 1.4861 17 8 2.1220 -4.5103 2.6921 18 6 2.5298 -5.9482 0.8923 19 6 2.7208 -7.0489 1.7217 20 6 3.0115 -8.2839 1.1473 21 7 3.2056 -9.4178 1.9448 22 6 3.4960 -10.6841 1.5051 23 6 3.5985 -11.4625 2.5987 24 7 3.3784 -10.6985 3.6793 25 6 3.1481 -9.4709 3.3015 26 6 3.1048 -8.3629 -0.2400 27 6 2.9070 -7.2222 -0.9973 28 7 2.6336 -6.0688 -0.4259 29 6 1.7021 -2.1934 1.1433 30 1 -0.3634 0.0925 1.0234 31 1 -0.3633 0.8401 -0.5919 32 1 -0.3633 -0.9326 -0.4317 33 1 -0.0023 3.0625 1.4981 34 1 2.5045 -1.8570 -2.0855 35 1 0.8034 -1.9794 -1.5330 36 1 3.0982 -3.8814 -1.0965 37 1 1.3502 -4.2269 -1.1915 38 1 2.6405 -6.9481 2.7939 39 1 3.6181 -10.9968 0.4786 40 1 3.8197 -12.5196 2.6050 41 1 2.9427 -8.6375 3.9570 42 1 3.3292 -9.3043 -0.7193 43 1 2.9781 -7.2792 -2.0735 44 1 0.6264 -2.0857 1.2822 45 1 2.2297 -1.9669 2.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972660539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:19 Heat of formation + Delta-G solvation = 99.126114 kcal Electronic energy + Delta-G solvation = -28655.018420 eV Core-core repulsion = 24674.697258 eV Total energy + Delta-G solvation = -3980.321162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.46561 -41.78598 -40.41252 -38.89073 -36.63819 -35.97815 -33.56346 -32.79377 -31.77061 -31.20189 -30.50524 -29.42293 -28.06223 -26.44926 -25.35223 -24.72001 -23.74873 -22.54072 -22.01897 -21.09292 -20.89219 -19.46548 -18.94028 -18.23699 -17.55653 -17.16942 -16.99292 -16.79138 -16.62728 -16.45286 -15.86595 -15.55098 -15.19673 -15.05887 -14.92513 -14.84386 -14.65442 -14.40492 -14.36817 -14.12841 -13.83712 -13.42848 -13.16143 -13.02280 -12.73977 -12.48728 -12.41244 -12.39873 -12.21721 -12.06651 -11.83959 -11.54913 -11.36534 -11.25089 -10.68773 -10.58883 -10.51110 -10.19056 -9.70339 -9.61597 -8.78954 -7.83329 -5.33651 -0.66006 -0.34625 1.11088 1.35578 1.48578 1.50395 1.57107 1.62984 1.80605 2.02479 2.51300 2.67993 2.89944 3.28321 3.31163 3.44155 3.56661 3.61630 3.74857 3.77317 3.90639 3.96454 4.12513 4.23544 4.35851 4.41285 4.46061 4.48151 4.49799 4.54125 4.68961 4.73539 4.81469 4.99813 5.04099 5.12964 5.17197 5.23406 5.32567 5.34826 5.46024 5.64825 5.65245 5.70764 6.01231 6.31494 6.39305 6.57307 6.87402 6.93511 7.13295 7.83753 8.28339 9.19067 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.002072 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.013589 B =13509.524497 C =14023.329492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.600 5.600 3 C -0.267 4.267 4 H 0.076 0.924 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.971 3.029 8 H -0.275 1.275 9 H -0.297 1.297 10 H -0.276 1.276 11 C 0.167 3.833 12 H 0.074 0.926 13 C -0.144 4.144 14 C 0.132 3.868 15 N -0.591 5.591 16 C 0.568 3.432 17 O -0.579 6.579 18 C 0.102 3.898 19 C -0.138 4.138 20 C 0.168 3.832 21 N -0.418 5.418 22 C -0.039 4.039 23 C -0.042 4.042 24 N -0.516 5.516 25 C 0.178 3.822 26 C -0.145 4.145 27 C 0.133 3.867 28 N -0.467 5.467 29 C 0.096 3.904 30 H 0.001 0.999 31 H 0.018 0.982 32 H 0.035 0.965 33 H 0.248 0.752 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.224 0.776 40 H 0.198 0.802 41 H 0.219 0.781 42 H 0.190 0.810 43 H 0.218 0.782 44 H 0.056 0.944 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -28.073 -9.613 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.321 5.321 3 C -0.397 4.397 4 H 0.093 0.907 5 C -0.248 4.248 6 N -0.583 5.583 7 Si 0.799 3.201 8 H -0.200 1.200 9 H -0.224 1.224 10 H -0.202 1.202 11 C 0.058 3.942 12 H 0.093 0.907 13 C -0.184 4.184 14 C 0.010 3.990 15 N -0.322 5.322 16 C 0.356 3.644 17 O -0.459 6.459 18 C -0.035 4.035 19 C -0.162 4.162 20 C 0.067 3.933 21 N -0.098 5.098 22 C -0.168 4.168 23 C -0.187 4.187 24 N -0.233 5.233 25 C -0.103 4.103 26 C -0.167 4.167 27 C -0.026 4.026 28 N -0.180 5.180 29 C -0.029 4.029 30 H 0.019 0.981 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.163 0.837 39 H 0.240 0.760 40 H 0.215 0.785 41 H 0.235 0.765 42 H 0.207 0.793 43 H 0.235 0.765 44 H 0.074 0.926 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.117 -27.395 -8.597 29.357 hybrid contribution 0.026 0.982 0.611 1.157 sum 6.143 -26.413 -7.986 28.269 Atomic orbital electron populations 1.20507 0.82675 0.96146 0.97511 1.44033 1.02040 1.00838 1.85158 1.19541 0.99025 0.86320 1.34808 0.90654 1.25861 0.98723 1.02120 0.98110 1.70237 1.21460 1.27842 1.38775 0.85281 0.77544 0.79252 0.77980 1.20047 1.22376 1.20218 1.21652 0.95664 0.84515 0.92383 0.90747 1.23186 1.02884 0.93536 0.98758 1.22183 1.03644 0.96368 0.76785 1.48390 1.66255 1.07927 1.09633 1.18008 0.77568 0.83528 0.85255 1.90771 1.54568 1.85237 1.15367 1.20447 1.00335 0.92319 0.90370 1.21675 1.01082 0.90907 1.02501 1.18025 0.98464 0.84980 0.91824 1.43305 1.51670 1.07480 1.07341 1.23491 1.08056 0.82106 1.03113 1.22951 1.06673 1.01580 0.87459 1.70357 1.18496 1.02141 1.32345 1.25723 1.04683 0.97954 0.81970 1.22591 1.00341 1.03642 0.90112 1.23591 0.91110 0.85086 1.02819 1.67886 1.11565 1.28869 1.09663 1.22835 0.99710 0.80998 0.99381 0.98085 0.96316 0.94667 0.94244 0.88693 0.91062 0.89081 0.89483 0.83659 0.75982 0.78507 0.76491 0.79283 0.76533 0.92611 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.56 7.56 127.77 0.97 9.53 16 2 N -0.60 -29.19 2.96 -694.58 -2.05 -31.25 16 3 C -0.27 -14.33 9.60 84.04 0.81 -13.52 16 4 H 0.08 3.87 7.87 -2.91 -0.02 3.85 16 5 C -0.05 -2.93 5.08 84.86 0.43 -2.50 16 6 N -0.94 -55.51 10.77 21.65 0.23 -55.28 16 7 Si 0.97 44.63 29.58 68.60 2.03 46.66 16 8 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 9 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 C 0.17 6.53 3.55 46.46 0.16 6.69 16 12 H 0.07 2.95 7.96 -2.39 -0.02 2.93 16 13 C -0.14 -4.21 6.49 31.78 0.21 -4.00 16 14 C 0.13 3.30 5.40 86.73 0.47 3.77 16 15 N -0.59 -19.21 3.33 -814.35 -2.71 -21.92 16 16 C 0.57 18.68 7.84 86.89 0.68 19.37 16 17 O -0.58 -23.22 16.57 -3.77 -0.06 -23.29 16 18 C 0.10 2.44 6.72 41.86 0.28 2.72 16 19 C -0.14 -2.83 9.06 22.73 0.21 -2.62 16 20 C 0.17 2.42 6.67 38.34 0.26 2.67 16 21 N -0.42 -6.20 2.99 -349.79 -1.04 -7.24 16 22 C -0.04 -0.41 10.89 83.03 0.90 0.50 16 23 C -0.04 -0.62 11.85 83.51 0.99 0.37 16 24 N -0.52 -10.95 11.24 -199.68 -2.25 -13.20 16 25 C 0.18 3.32 11.95 179.99 2.15 5.47 16 26 C -0.15 -1.05 9.55 22.54 0.22 -0.84 16 27 C 0.13 1.14 11.17 84.75 0.95 2.08 16 28 N -0.47 -8.26 6.84 -185.12 -1.27 -9.53 16 29 C 0.10 3.78 6.46 86.93 0.56 4.34 16 30 H 0.00 0.05 7.33 -2.39 -0.02 0.03 16 31 H 0.02 0.96 7.38 -2.39 -0.02 0.94 16 32 H 0.03 1.44 6.37 -2.39 -0.02 1.42 16 33 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.07 2.16 6.47 -2.39 -0.02 2.15 16 36 H 0.09 1.98 7.40 -2.39 -0.02 1.97 16 37 H 0.09 1.92 7.53 -2.39 -0.02 1.90 16 38 H 0.15 3.16 6.49 -2.91 -0.02 3.15 16 39 H 0.22 0.13 7.23 -2.91 -0.02 0.11 16 40 H 0.20 1.72 8.06 -2.91 -0.02 1.69 16 41 H 0.22 3.40 7.15 -2.91 -0.02 3.38 16 42 H 0.19 -0.23 6.94 -2.91 -0.02 -0.25 16 43 H 0.22 -0.05 8.06 -2.91 -0.02 -0.07 16 44 H 0.06 2.36 6.96 -2.39 -0.02 2.35 16 45 H 0.05 2.12 8.03 -2.39 -0.02 2.10 16 Total: -1.00 -77.64 369.12 4.14 -73.50 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.02 Total: 7.50 kcal Atomic # 6 Polarization: 23.80 SS G_CDS: 10.24 Total: 34.03 kcal Atomic # 7 Polarization: -129.32 SS G_CDS: -9.08 Total: -138.41 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.06 Total: -23.29 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -77.64 4.14 -73.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972660539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.625 kcal (2) G-P(sol) polarization free energy of solvation -77.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds