Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 119.99981 * 2 1 4 4 H 1.08005 * 119.99447 * 154.74197 * 3 2 1 5 5 C 1.38815 * 120.00325 * 334.74386 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.29032 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.28747 * 5 3 2 8 8 H 1.48505 * 109.46927 * 60.00157 * 7 5 3 9 9 H 1.48497 * 109.47163 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47291 * 300.00203 * 7 5 3 11 11 C 1.46499 * 119.99903 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.64393 * 181.68684 * 11 2 1 13 13 C 1.55160 * 110.71899 * 305.02433 * 11 2 1 14 14 C 1.54910 * 101.58066 * 153.86642 * 13 11 2 15 15 N 1.47424 * 104.83272 * 322.98680 * 14 13 11 16 16 C 1.34779 * 125.64981 * 204.09238 * 15 14 13 17 17 O 1.21542 * 119.99772 * 180.02562 * 16 15 14 18 18 C 1.47975 * 119.99938 * 0.04734 * 16 15 14 19 19 C 1.39444 * 119.65071 * 179.72702 * 18 16 15 20 20 C 1.38346 * 119.14063 * 179.79096 * 19 18 16 21 21 C 1.39291 * 118.43243 * 0.47209 * 20 19 18 22 22 N 1.39875 * 120.38873 * 179.72747 * 21 20 19 23 23 C 1.37154 * 126.47955 * 180.02562 * 22 21 20 24 24 C 1.34626 * 106.82863 * 179.97438 * 23 22 21 25 25 N 1.34151 * 108.21573 * 0.02562 * 24 23 22 26 26 C 1.30493 * 109.36231 * 359.74113 * 25 24 23 27 27 C 1.39272 * 119.21974 * 359.74389 * 21 20 19 28 28 N 1.31387 * 120.80321 * 0.03103 * 27 21 20 29 29 C 1.47027 * 108.70451 * 24.13157 * 15 14 13 30 30 H 1.08998 * 109.46931 * 84.50530 * 1 2 3 31 31 H 1.09002 * 109.47415 * 204.50557 * 1 2 3 32 32 H 1.09004 * 109.46808 * 324.50817 * 1 2 3 33 33 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 34 34 H 1.08997 * 111.00516 * 271.94024 * 13 11 2 35 35 H 1.08999 * 111.00487 * 35.79233 * 13 11 2 36 36 H 1.09002 * 110.36570 * 204.15072 * 14 13 11 37 37 H 1.08999 * 110.46092 * 81.87425 * 14 13 11 38 38 H 1.08006 * 120.43077 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.78523 * 180.19760 * 20 19 18 40 40 H 1.07995 * 126.59146 * 359.97438 * 23 22 21 41 41 H 1.08001 * 125.89743 * 180.02562 * 24 23 22 42 42 H 1.08005 * 125.72122 * 180.24335 * 26 25 24 43 43 H 1.07996 * 119.59961 * 179.97438 * 27 21 20 44 44 H 1.09000 * 109.87907 * 239.52259 * 29 15 14 45 45 H 1.09001 * 109.88021 * 118.35282 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1523 1.2305 0.3991 5 6 1.5552 2.3306 -0.5129 6 7 0.3045 2.2960 -0.9214 7 14 2.5302 3.9201 -0.6232 8 1 3.7177 3.7132 -1.4906 9 1 1.6745 4.9865 -1.2026 10 1 2.9738 4.3241 0.7352 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0918 0.0295 13 6 1.7506 -2.1611 1.1875 14 6 2.0637 -3.5786 0.6467 15 7 1.7323 -3.5167 -0.7885 16 6 1.4055 -4.5685 -1.5653 17 8 1.1504 -4.3992 -2.7415 18 6 1.3568 -5.9293 -0.9860 19 6 1.0123 -7.0115 -1.7950 20 6 0.9742 -8.2797 -1.2434 21 6 1.2740 -8.4239 0.1092 22 7 1.2424 -9.6866 0.7102 23 6 1.5133 -9.9711 2.0243 24 6 1.3654 -11.3009 2.1736 25 7 1.0146 -11.8197 0.9872 26 6 0.9326 -10.8627 0.1038 27 6 1.6052 -7.2961 0.8562 28 7 1.6364 -6.1061 0.3001 29 6 1.8182 -2.1176 -1.2323 30 1 -0.3633 0.0984 -1.0229 31 1 -0.3634 -0.9351 0.4263 32 1 -0.3633 0.8368 0.5967 33 1 -0.1108 3.0959 -1.2802 34 1 2.3372 -1.9453 2.0805 35 1 0.6849 -2.0446 1.3844 36 1 1.4430 -4.3214 1.1477 37 1 3.1194 -3.8136 0.7824 38 1 0.7810 -6.8621 -2.8393 39 1 0.7139 -9.1371 -1.8463 40 1 1.7918 -9.2644 2.7919 41 1 1.5050 -11.8546 3.0903 42 1 0.6657 -10.9852 -0.9355 43 1 1.8383 -7.4008 1.9055 44 1 0.8540 -1.7931 -1.6236 45 1 2.5848 -2.0190 -2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972714249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = 123.393159 kcal Electronic energy + Delta-G solvation = -28653.523928 eV Core-core repulsion = 24674.255063 eV Total energy + Delta-G solvation = -3979.268864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.88100 -40.91722 -39.28156 -37.44596 -35.21312 -34.76544 -32.91141 -31.74115 -30.54969 -30.00515 -29.62695 -27.86969 -26.07115 -25.44891 -24.48866 -23.42712 -22.33523 -21.67341 -21.38917 -20.11795 -19.20732 -19.10673 -17.43853 -17.14384 -16.92380 -16.18434 -15.86285 -15.62749 -15.37543 -15.01929 -14.90541 -14.55906 -14.30140 -14.20013 -13.75941 -13.61268 -13.48771 -13.28291 -13.11404 -12.61086 -12.40999 -12.18070 -11.81463 -11.57626 -11.48297 -10.90824 -10.82324 -10.72015 -10.59664 -10.39980 -10.37982 -10.34934 -10.27419 -9.88284 -9.83682 -9.62507 -9.31454 -8.94638 -8.54650 -8.32027 -6.81217 -5.78579 -3.26733 -0.13840 0.58152 1.59783 2.01867 2.57401 2.66842 3.00132 3.36356 3.41901 3.42286 3.49790 3.71211 3.90569 3.97103 4.11306 4.26984 4.34394 4.44708 4.63806 4.87605 4.98690 5.10444 5.12305 5.19983 5.22882 5.37179 5.42917 5.60929 5.64592 5.69534 5.78014 5.90633 5.98130 6.14216 6.17022 6.34692 6.41419 6.53669 6.60059 6.64150 6.84157 6.88574 7.16923 7.44640 7.44848 7.70272 7.72785 7.82110 8.19218 8.36351 9.19534 9.79565 10.29476 11.25405 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030908 B = 0.002055 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.703004 B =13621.585626 C =14130.099519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.589 5.589 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.158 4.158 14 C 0.104 3.896 15 N -0.587 5.587 16 C 0.573 3.427 17 O -0.538 6.538 18 C 0.086 3.914 19 C -0.083 4.083 20 C -0.096 4.096 21 C 0.098 3.902 22 N -0.409 5.409 23 C -0.052 4.052 24 C -0.019 4.019 25 N -0.483 5.483 26 C 0.191 3.809 27 C 0.092 3.908 28 N -0.422 5.422 29 C 0.084 3.916 30 H 0.025 0.975 31 H -0.004 1.004 32 H 0.055 0.945 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.211 0.789 43 H 0.169 0.831 44 H 0.075 0.925 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 -24.572 5.077 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.310 5.310 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.198 4.198 14 C -0.019 4.019 15 N -0.318 5.318 16 C 0.359 3.641 17 O -0.416 6.416 18 C -0.053 4.053 19 C -0.104 4.104 20 C -0.123 4.123 21 C 0.001 3.999 22 N -0.090 5.090 23 C -0.181 4.181 24 C -0.165 4.165 25 N -0.199 5.199 26 C -0.090 4.090 27 C -0.070 4.070 28 N -0.133 5.133 29 C -0.040 4.040 30 H 0.044 0.956 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.179 0.821 39 H 0.169 0.831 40 H 0.200 0.800 41 H 0.194 0.806 42 H 0.227 0.773 43 H 0.186 0.814 44 H 0.094 0.906 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.848 -24.338 4.666 24.850 hybrid contribution 0.395 0.942 -0.445 1.115 sum 2.243 -23.396 4.221 23.879 Atomic orbital electron populations 1.20891 0.82183 0.95554 0.99434 1.43899 1.02028 0.99837 1.85217 1.19176 0.99353 0.86089 1.34450 0.91198 1.25200 0.96531 0.98918 0.98465 1.70088 1.11054 1.28215 1.45698 0.86308 0.79320 0.82848 0.77892 1.20873 1.21588 1.20952 1.21372 0.96386 0.85895 0.90097 0.90330 1.23427 1.02712 0.93768 0.99879 1.22645 1.00694 0.98624 0.79905 1.48404 1.64477 1.07496 1.11404 1.17352 0.78798 0.82602 0.85382 1.90810 1.50808 1.84615 1.15370 1.21429 0.98930 0.95166 0.89751 1.22051 0.95393 0.90528 1.02445 1.21296 0.99685 0.98910 0.92417 1.19106 1.02016 0.84854 0.93883 1.43134 1.50273 1.05987 1.09557 1.22889 1.10280 0.99119 0.85804 1.22433 1.05344 0.91510 0.97177 1.70363 1.18242 1.30636 1.00678 1.25387 1.03945 0.79072 1.00608 1.22728 0.97847 0.85816 1.00606 1.68030 1.10928 1.23069 1.11279 1.23042 1.02547 0.78275 1.00119 0.95622 0.98614 0.92633 0.93529 0.90489 0.90556 0.88614 0.91788 0.82118 0.83143 0.80012 0.80559 0.77303 0.81418 0.90622 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 7.70 59.85 0.46 4.43 16 2 N -0.59 -14.24 2.94 -171.38 -0.50 -14.74 16 3 C -0.26 -6.94 9.61 -15.06 -0.14 -7.08 16 4 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 5 C 0.01 0.20 5.38 -17.43 -0.09 0.11 16 6 N -0.91 -25.89 10.11 55.49 0.56 -25.33 16 7 Si 0.91 21.39 29.56 -169.99 -5.02 16.37 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.38 3.44 -66.09 -0.23 3.15 16 12 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 13 C -0.16 -2.51 6.59 -24.58 -0.16 -2.67 16 14 C 0.10 1.44 5.93 -2.53 -0.02 1.42 16 15 N -0.59 -9.67 3.33 -171.57 -0.57 -10.24 16 16 C 0.57 9.28 7.83 -12.27 -0.10 9.19 16 17 O -0.54 -10.26 16.64 5.33 0.09 -10.17 16 18 C 0.09 1.06 6.72 -83.01 -0.56 0.50 16 19 C -0.08 -0.79 9.62 -39.09 -0.38 -1.16 16 20 C -0.10 -0.67 9.57 -39.15 -0.37 -1.04 16 21 C 0.10 0.74 6.66 -83.41 -0.56 0.18 16 22 N -0.41 -2.99 2.98 -61.93 -0.18 -3.17 16 23 C -0.05 -0.34 10.86 -16.45 -0.18 -0.51 16 24 C -0.02 -0.15 11.85 -17.82 -0.21 -0.36 16 25 N -0.48 -4.58 11.24 -14.46 -0.16 -4.74 16 26 C 0.19 1.42 11.93 -89.59 -1.07 0.35 16 27 C 0.09 0.74 10.64 -17.36 -0.18 0.56 16 28 N -0.42 -4.55 6.57 -9.66 -0.06 -4.62 16 29 C 0.08 1.62 6.50 -3.06 -0.02 1.60 16 30 H 0.03 0.68 7.38 -51.93 -0.38 0.30 16 31 H 0.00 -0.10 6.13 -51.93 -0.32 -0.42 16 32 H 0.06 1.47 7.02 -51.93 -0.36 1.10 16 33 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.30 6.14 -51.93 -0.32 0.99 16 36 H 0.10 1.21 5.88 -51.93 -0.31 0.91 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.16 1.43 7.63 -52.48 -0.40 1.03 16 39 H 0.15 0.57 6.88 -52.49 -0.36 0.21 16 40 H 0.18 0.62 7.16 -52.49 -0.38 0.25 16 41 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.21 0.82 7.12 -52.48 -0.37 0.45 16 43 H 0.17 0.88 6.82 -52.49 -0.36 0.52 16 44 H 0.08 1.65 7.07 -51.93 -0.37 1.29 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -33.45 367.34 -9.71 -43.15 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.58 Total: -0.69 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -3.81 Total: 8.66 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.92 Total: -62.85 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.45 -9.71 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972714249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.544 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds