Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36938 * 120.00279 * 2 1 4 4 H 1.07996 * 120.00368 * 148.12576 * 3 2 1 5 5 C 1.38815 * 119.99701 * 328.12527 * 3 2 1 6 6 N 1.31617 * 119.99842 * 154.12582 * 5 3 2 7 7 Si 1.86803 * 119.99869 * 334.12621 * 5 3 2 8 8 H 1.48494 * 109.46989 * 95.06029 * 7 5 3 9 9 H 1.48502 * 109.46745 * 215.05667 * 7 5 3 10 10 H 1.48496 * 109.47181 * 335.05274 * 7 5 3 11 11 C 1.46504 * 120.00097 * 180.26975 * 2 1 3 12 12 H 1.08999 * 110.64313 * 180.70136 * 11 2 1 13 13 C 1.55158 * 110.71640 * 57.56529 * 11 2 1 14 14 C 1.54913 * 101.57972 * 206.13526 * 13 11 2 15 15 N 1.47431 * 104.83338 * 37.00636 * 14 13 11 16 16 C 1.34772 * 125.64675 * 155.90402 * 15 14 13 17 17 O 1.21540 * 119.99747 * 179.97438 * 16 15 14 18 18 C 1.47978 * 120.00217 * 359.97438 * 16 15 14 19 19 C 1.39448 * 119.64945 * 179.97438 * 18 16 15 20 20 C 1.38337 * 119.13617 * 179.97438 * 19 18 16 21 21 C 1.39291 * 118.43728 * 0.02562 * 20 19 18 22 22 N 1.39876 * 120.38730 * 180.02562 * 21 20 19 23 23 C 1.37163 * 126.48095 * 180.02562 * 22 21 20 24 24 C 1.34620 * 106.82978 * 180.02562 * 23 22 21 25 25 N 1.34150 * 108.21537 * 359.97438 * 24 23 22 26 26 C 1.30486 * 109.36501 * 359.72134 * 25 24 23 27 27 C 1.39272 * 119.22051 * 359.97438 * 21 20 19 28 28 N 1.31391 * 120.79769 * 359.73930 * 27 21 20 29 29 C 1.47323 * 108.73155 * 335.71672 * 15 14 13 30 30 H 1.08997 * 109.47802 * 275.24299 * 1 2 3 31 31 H 1.09007 * 109.47311 * 35.24112 * 1 2 3 32 32 H 1.09004 * 109.47028 * 155.23616 * 1 2 3 33 33 H 0.97010 * 119.99586 * 180.02562 * 6 5 3 34 34 H 1.08998 * 111.00206 * 324.20398 * 13 11 2 35 35 H 1.08996 * 111.01039 * 88.02066 * 13 11 2 36 36 H 1.09000 * 110.37097 * 155.84654 * 14 13 11 37 37 H 1.08999 * 110.36636 * 278.06219 * 14 13 11 38 38 H 1.07997 * 120.42905 * 359.97438 * 19 18 16 39 39 H 1.08004 * 120.78448 * 179.97438 * 20 19 18 40 40 H 1.08008 * 126.58306 * 0.02562 * 23 22 21 41 41 H 1.08002 * 125.89345 * 180.02562 * 24 23 22 42 42 H 1.08006 * 125.72542 * 180.26290 * 26 25 24 43 43 H 1.08001 * 119.59816 * 179.97438 * 27 21 20 44 44 H 1.08996 * 110.05916 * 241.86826 * 29 15 14 45 45 H 1.09003 * 109.84206 * 120.61269 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1075 1.2564 0.4939 5 6 1.6126 2.2974 -0.6348 6 7 1.9517 3.5071 -0.2426 7 14 0.4085 2.0762 -2.0458 8 1 -0.9809 2.1442 -1.5261 9 1 0.6159 3.1532 -3.0469 10 1 0.6335 0.7553 -2.6860 11 6 2.1975 -1.2687 -0.0060 12 1 3.2729 -1.0916 0.0073 13 6 1.7978 -2.1275 -1.2349 14 6 2.0902 -3.5596 -0.7218 15 7 1.7029 -3.5374 0.7006 16 6 1.3465 -4.6101 1.4344 17 8 1.0456 -4.4734 2.6041 18 6 1.3213 -5.9543 0.8162 19 6 0.9519 -7.0592 1.5825 20 6 0.9316 -8.3108 0.9937 21 6 1.2838 -8.4177 -0.3497 22 7 1.2768 -9.6632 -0.9862 23 6 1.5997 -9.9117 -2.2959 24 6 1.4586 -11.2366 -2.4875 25 7 1.0613 -11.7877 -1.3308 26 6 0.9548 -10.8572 -0.4223 27 6 1.6420 -7.2696 -1.0521 28 7 1.6454 -6.0947 -0.4638 29 6 1.7743 -2.1492 1.1886 30 1 -0.3634 0.0939 1.0233 31 1 -0.3634 0.8394 -0.5930 32 1 -0.3633 -0.9332 -0.4305 33 1 1.5761 4.2839 -0.6860 34 1 0.7406 -2.0049 -1.4699 35 1 2.4182 -1.8869 -2.0982 36 1 1.4898 -4.2879 -1.2670 37 1 3.1505 -3.7902 -0.8244 38 1 0.6852 -6.9393 2.6221 39 1 0.6500 -9.1848 1.5624 40 1 1.9080 -9.1839 -3.0320 41 1 1.6355 -11.7650 -3.4127 42 1 0.6571 -11.0095 0.6047 43 1 1.9166 -7.3454 -2.0938 44 1 2.5125 -2.0710 1.9867 45 1 0.7964 -1.8344 1.5532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972714250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = 129.229069 kcal Electronic energy + Delta-G solvation = -28736.672234 eV Core-core repulsion = 24757.656433 eV Total energy + Delta-G solvation = -3979.015800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.92548 -40.99815 -39.40598 -37.62989 -35.30609 -34.93502 -32.97304 -31.90022 -30.79131 -30.16882 -29.88630 -28.26261 -26.29269 -25.54432 -24.56296 -23.59588 -22.46723 -21.73756 -21.43889 -20.21788 -19.36690 -19.17394 -17.55922 -17.17932 -16.93436 -16.30890 -16.11325 -15.73523 -15.44409 -15.32205 -15.01146 -14.58626 -14.40536 -14.34236 -14.01907 -13.73009 -13.63712 -13.29259 -13.14979 -13.01261 -12.58336 -12.42578 -12.22942 -11.87007 -11.60719 -11.48883 -11.08856 -10.89633 -10.74025 -10.57899 -10.47651 -10.43976 -10.12775 -9.98889 -9.76552 -9.53922 -9.36394 -8.99868 -8.55586 -8.46950 -7.01694 -6.06279 -3.41924 -0.20484 0.51681 1.54516 1.96994 2.50590 2.61073 2.87362 3.27363 3.40947 3.43181 3.47185 3.63699 3.84843 3.90897 4.06478 4.21928 4.27134 4.46966 4.56495 4.80977 4.83508 4.93804 5.05500 5.08390 5.15883 5.19805 5.23904 5.42101 5.52338 5.58860 5.70529 5.72712 5.81376 6.03269 6.10255 6.11831 6.19913 6.33171 6.39860 6.42088 6.55833 6.58726 6.67568 6.75710 7.09446 7.40749 7.55729 7.91605 8.07000 8.27507 8.87599 9.63621 10.00198 11.09082 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.002240 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.724596 B =12498.660067 C =13274.647230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.596 5.596 3 C -0.274 4.274 4 H 0.084 0.916 5 C 0.034 3.966 6 N -0.894 5.894 7 Si 0.882 3.118 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.271 1.271 11 C 0.171 3.829 12 H 0.089 0.911 13 C -0.161 4.161 14 C 0.103 3.897 15 N -0.589 5.589 16 C 0.575 3.425 17 O -0.538 6.538 18 C 0.084 3.916 19 C -0.082 4.082 20 C -0.096 4.096 21 C 0.100 3.900 22 N -0.410 5.410 23 C -0.052 4.052 24 C -0.019 4.019 25 N -0.482 5.482 26 C 0.191 3.809 27 C 0.092 3.908 28 N -0.423 5.423 29 C 0.088 3.912 30 H 0.021 0.979 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.211 0.789 43 H 0.169 0.831 44 H 0.069 0.931 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 -27.704 -2.976 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.318 5.318 3 C -0.402 4.402 4 H 0.101 0.899 5 C -0.167 4.167 6 N -0.535 5.535 7 Si 0.713 3.287 8 H -0.216 1.216 9 H -0.232 1.232 10 H -0.196 1.196 11 C 0.062 3.938 12 H 0.107 0.893 13 C -0.201 4.201 14 C -0.020 4.020 15 N -0.320 5.320 16 C 0.362 3.638 17 O -0.415 6.415 18 C -0.055 4.055 19 C -0.103 4.103 20 C -0.123 4.123 21 C 0.003 3.997 22 N -0.090 5.090 23 C -0.181 4.181 24 C -0.164 4.164 25 N -0.199 5.199 26 C -0.090 4.090 27 C -0.070 4.070 28 N -0.133 5.133 29 C -0.036 4.036 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.179 0.821 39 H 0.169 0.831 40 H 0.200 0.800 41 H 0.195 0.805 42 H 0.227 0.773 43 H 0.186 0.814 44 H 0.087 0.913 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.123 -27.453 -2.655 27.604 hybrid contribution -0.795 0.071 -0.635 1.020 sum -1.917 -27.382 -3.290 27.645 Atomic orbital electron populations 1.21330 0.84673 0.98709 0.98852 1.44051 1.00564 1.01380 1.85826 1.18793 1.05840 0.85367 1.30156 0.89891 1.25328 0.98243 0.95019 0.98082 1.69914 1.45812 0.97556 1.40176 0.86906 0.80444 0.77282 0.84034 1.21557 1.23159 1.19591 1.21463 0.97004 0.85313 0.90018 0.89285 1.23495 1.02534 0.93753 1.00332 1.22674 1.00572 0.98462 0.80284 1.48421 1.63635 1.07328 1.12635 1.17320 0.78737 0.82444 0.85337 1.90811 1.50118 1.85037 1.15557 1.21374 0.99062 0.95007 0.90028 1.22041 0.95468 0.90479 1.02341 1.21301 0.99585 0.99195 0.92251 1.19111 1.01690 0.85240 0.93618 1.43143 1.49676 1.06092 1.10129 1.22897 1.09772 0.99527 0.85888 1.22439 1.04957 0.91246 0.97750 1.70363 1.17918 1.31122 1.00453 1.25393 1.03914 0.78904 1.00776 1.22733 0.97859 0.85689 1.00708 1.68018 1.11093 1.24179 1.10023 1.22841 1.02578 0.79022 0.99129 0.96067 0.94185 0.94579 0.92622 0.91013 0.90043 0.88459 0.91488 0.82107 0.83100 0.79997 0.80530 0.77284 0.81377 0.91289 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.33 8.37 59.84 0.50 2.83 16 2 N -0.60 -13.57 2.58 -171.39 -0.44 -14.01 16 3 C -0.27 -7.38 9.88 -15.06 -0.15 -7.52 16 4 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 5 C 0.03 0.96 5.29 -17.43 -0.09 0.87 16 6 N -0.89 -26.73 13.97 55.49 0.78 -25.95 16 7 Si 0.88 21.73 25.06 -169.99 -4.26 17.47 16 8 H -0.29 -6.94 6.63 56.52 0.37 -6.57 16 9 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 C 0.17 3.15 3.43 -66.10 -0.23 2.93 16 12 H 0.09 1.64 7.95 -51.93 -0.41 1.23 16 13 C -0.16 -2.50 6.60 -24.58 -0.16 -2.66 16 14 C 0.10 1.35 5.94 -2.52 -0.01 1.33 16 15 N -0.59 -8.93 3.33 -171.34 -0.57 -9.50 16 16 C 0.58 8.61 7.83 -12.27 -0.10 8.52 16 17 O -0.54 -9.46 16.64 5.33 0.09 -9.38 16 18 C 0.08 0.96 6.72 -83.01 -0.56 0.40 16 19 C -0.08 -0.72 9.62 -39.09 -0.38 -1.09 16 20 C -0.10 -0.61 9.57 -39.15 -0.37 -0.99 16 21 C 0.10 0.70 6.66 -83.41 -0.56 0.15 16 22 N -0.41 -2.84 2.98 -61.92 -0.18 -3.02 16 23 C -0.05 -0.32 10.86 -16.45 -0.18 -0.50 16 24 C -0.02 -0.14 11.85 -17.82 -0.21 -0.35 16 25 N -0.48 -4.43 11.24 -14.47 -0.16 -4.60 16 26 C 0.19 1.35 11.93 -89.59 -1.07 0.28 16 27 C 0.09 0.70 10.64 -17.36 -0.18 0.51 16 28 N -0.42 -4.28 6.57 -9.66 -0.06 -4.35 16 29 C 0.09 1.52 6.52 -2.90 -0.02 1.50 16 30 H 0.02 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.04 0.93 2.59 -51.93 -0.13 0.80 16 32 H 0.04 0.68 6.30 -51.93 -0.33 0.35 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.07 1.18 6.30 -51.93 -0.33 0.86 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.17 5.87 -51.93 -0.30 0.87 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.16 1.30 7.63 -52.49 -0.40 0.90 16 39 H 0.15 0.48 6.88 -52.48 -0.36 0.12 16 40 H 0.18 0.58 7.16 -52.48 -0.38 0.20 16 41 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.21 0.74 7.12 -52.48 -0.37 0.37 16 43 H 0.17 0.82 6.82 -52.49 -0.36 0.47 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.40 6.96 -51.93 -0.36 1.04 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -34.22 363.45 -8.54 -42.76 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.43 Total: -1.11 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -3.77 Total: 6.21 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.65 Total: -61.43 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.26 Total: 17.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.22 -8.54 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972714250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.989 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds