Wall clock time and date at job start Sat Apr 11 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36943 * 120.00075 * 2 1 4 4 H 1.07998 * 120.00023 * 204.48866 * 3 2 1 5 5 C 1.38812 * 119.99921 * 24.48472 * 3 2 1 6 6 N 1.31617 * 119.99764 * 7.76232 * 5 3 2 7 7 Si 1.86797 * 120.00058 * 187.76016 * 5 3 2 8 8 H 1.48499 * 109.46846 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47028 * 120.00011 * 7 5 3 10 10 H 1.48501 * 109.46792 * 240.00278 * 7 5 3 11 11 C 1.46496 * 120.00023 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.88720 * 182.42600 * 11 2 1 13 13 C 1.55156 * 111.03871 * 306.33064 * 11 2 1 14 14 C 1.54333 * 103.02414 * 153.39630 * 13 11 2 15 15 N 1.47016 * 107.26435 * 338.13789 * 14 13 11 16 16 C 1.34779 * 125.64906 * 178.84610 * 15 14 13 17 17 O 1.21574 * 120.00069 * 185.81261 * 16 15 14 18 18 C 1.47689 * 119.99876 * 5.81894 * 16 15 14 19 19 C 1.39694 * 120.07909 * 173.04037 * 18 16 15 20 20 C 1.37739 * 119.91763 * 180.02562 * 19 18 16 21 21 C 1.39021 * 120.08221 * 359.97438 * 20 19 18 22 22 N 1.39933 * 119.91983 * 179.97438 * 21 20 19 23 23 C 1.36316 * 126.86337 * 180.29279 * 22 21 20 24 24 C 1.34962 * 106.77578 * 180.18553 * 23 22 21 25 25 N 1.33373 * 109.02166 * 359.58148 * 24 23 22 26 26 N 1.28769 * 109.92096 * 0.25997 * 25 24 23 27 27 C 1.39029 * 120.15868 * 0.25625 * 21 20 19 28 28 C 1.37741 * 120.08180 * 359.48699 * 27 21 20 29 29 C 1.47428 * 108.70720 * 358.58682 * 15 14 13 30 30 H 1.09006 * 109.47074 * 275.25069 * 1 2 3 31 31 H 1.08997 * 109.47304 * 35.24788 * 1 2 3 32 32 H 1.08999 * 109.47482 * 155.25281 * 1 2 3 33 33 H 0.97008 * 119.99915 * 179.97438 * 6 5 3 34 34 H 1.09005 * 110.71864 * 271.95789 * 13 11 2 35 35 H 1.08996 * 110.72233 * 35.22236 * 13 11 2 36 36 H 1.08997 * 109.98967 * 218.66330 * 14 13 11 37 37 H 1.09000 * 109.77819 * 97.49395 * 14 13 11 38 38 H 1.08004 * 120.03986 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.95870 * 179.97438 * 20 19 18 40 40 H 1.07996 * 126.61734 * 0.02562 * 23 22 21 41 41 H 1.08004 * 125.49022 * 179.84491 * 24 23 22 42 42 H 1.08000 * 119.96129 * 179.72637 * 27 21 20 43 43 H 1.07991 * 120.04601 * 180.25424 * 28 27 21 44 44 H 1.09000 * 110.37053 * 143.18957 * 29 15 14 45 45 H 1.08991 * 110.36937 * 265.40863 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1568 1.2280 -0.3877 5 6 1.5493 2.3340 0.4982 6 7 0.3858 2.2563 1.1086 7 14 2.3926 3.9893 0.3025 8 1 3.6800 3.8071 -0.4148 9 1 1.5173 4.9017 -0.4763 10 1 2.6506 4.5748 1.6426 11 6 2.1975 -1.2687 -0.0006 12 1 3.2729 -1.0965 0.0426 13 6 1.7330 -2.1806 1.1657 14 6 2.0341 -3.5996 0.6388 15 7 2.0999 -3.5157 -0.8275 16 6 2.3652 -4.5405 -1.6618 17 8 2.4988 -4.3358 -2.8527 18 6 2.4935 -5.9120 -1.1292 19 6 2.6232 -6.9935 -2.0040 20 6 2.7421 -8.2713 -1.5037 21 6 2.7336 -8.4854 -0.1301 22 7 2.8540 -9.7850 0.3745 23 6 2.8571 -10.1560 1.6861 24 6 2.9989 -11.4980 1.7111 25 7 3.0724 -11.9507 0.4587 26 7 2.9905 -10.9674 -0.3688 27 6 2.5998 -7.4121 0.7434 28 6 2.4858 -6.1309 0.2505 29 6 1.8215 -2.1264 -1.2347 30 1 -0.3633 0.0941 1.0234 31 1 -0.3634 0.8392 -0.5931 32 1 -0.3634 -0.9333 -0.4302 33 1 -0.0337 3.0586 1.4571 34 1 2.3058 -1.9726 2.0695 35 1 0.6653 -2.0594 1.3482 36 1 1.2392 -4.2837 0.9357 37 1 2.9897 -3.9445 1.0336 38 1 2.6295 -6.8279 -3.0712 39 1 2.8420 -9.1079 -2.1793 40 1 2.7664 -9.5020 2.5408 41 1 3.0414 -12.1075 2.6017 42 1 2.5891 -7.5825 1.8098 43 1 2.3860 -5.2972 0.9295 44 1 2.4382 -1.8509 -2.0902 45 1 0.7652 -2.0059 -1.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972714608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:16 Heat of formation + Delta-G solvation = 158.376862 kcal Electronic energy + Delta-G solvation = -28498.285597 eV Core-core repulsion = 24520.533740 eV Total energy + Delta-G solvation = -3977.751857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63719 -40.68088 -38.98220 -37.52960 -35.15988 -34.74332 -32.26659 -31.57661 -31.06067 -30.32377 -29.92695 -27.97326 -26.14536 -25.48641 -23.95888 -23.70865 -22.67382 -21.84750 -21.45720 -20.07496 -19.45368 -18.86252 -17.50009 -17.16160 -16.30563 -16.22720 -15.87313 -15.62496 -15.44875 -14.85939 -14.61851 -14.48647 -14.27665 -14.09501 -13.67479 -13.53147 -13.39725 -13.20549 -12.67110 -12.55160 -12.46835 -12.31955 -12.07502 -11.76673 -11.63240 -11.47035 -11.10162 -10.96367 -10.74779 -10.57193 -10.54331 -10.32410 -9.99163 -9.98559 -9.89424 -9.87870 -9.57726 -8.92320 -8.67972 -8.50475 -6.88376 -5.83806 -3.33861 -0.13378 0.81602 1.20118 1.64097 2.08613 2.65973 2.96141 3.31241 3.39228 3.40830 3.48023 3.88597 3.98289 4.27786 4.29591 4.38251 4.45182 4.56093 4.72570 4.75312 4.82328 5.00904 5.06771 5.10495 5.16799 5.30010 5.42428 5.45991 5.53056 5.58671 5.66895 5.77146 5.80760 5.87773 5.92307 6.02551 6.16990 6.23233 6.36002 6.42653 6.52285 6.68946 6.75792 7.29412 7.55552 7.64201 7.65505 7.71786 8.12631 8.28386 9.11659 9.72399 10.20806 11.20352 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028748 B = 0.002000 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.730241 B =13995.589023 C =14558.835863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.154 4.154 14 C 0.089 3.911 15 N -0.604 5.604 16 C 0.567 3.433 17 O -0.538 6.538 18 C -0.120 4.120 19 C -0.039 4.039 20 C -0.117 4.117 21 C 0.153 3.847 22 N -0.318 5.318 23 C 0.024 3.976 24 C -0.073 4.073 25 N -0.232 5.232 26 N -0.062 5.062 27 C -0.134 4.134 28 C -0.101 4.101 29 C 0.083 3.917 30 H 0.034 0.966 31 H 0.045 0.955 32 H -0.001 1.001 33 H 0.253 0.747 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.198 0.802 41 H 0.191 0.809 42 H 0.138 0.862 43 H 0.178 0.822 44 H 0.076 0.924 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -22.011 4.454 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.034 4.034 15 N -0.337 5.337 16 C 0.356 3.644 17 O -0.417 6.417 18 C -0.124 4.124 19 C -0.059 4.059 20 C -0.137 4.137 21 C 0.061 3.939 22 N -0.099 5.099 23 C -0.126 4.126 24 C -0.228 4.228 25 N -0.102 5.102 26 N -0.040 5.040 27 C -0.155 4.155 28 C -0.119 4.119 29 C -0.041 4.041 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.018 0.982 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.215 0.785 41 H 0.208 0.792 42 H 0.156 0.844 43 H 0.194 0.806 44 H 0.094 0.906 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.256 -22.427 2.446 22.794 hybrid contribution 0.202 1.322 1.179 1.783 sum 3.458 -21.105 3.625 21.691 Atomic orbital electron populations 1.20849 0.82322 0.95561 0.99704 1.43807 1.01920 0.99789 1.85034 1.19270 0.99236 0.85632 1.34855 0.91168 1.25100 0.97428 0.98800 0.97964 1.70058 1.16979 1.27579 1.40464 0.86134 0.78900 0.83850 0.77353 1.20216 1.21548 1.21607 1.21408 0.96540 0.85881 0.89873 0.90210 1.23313 1.03198 0.92190 1.00731 1.22563 1.00444 0.99816 0.80591 1.48335 1.68401 1.09910 1.07036 1.17771 0.77494 0.83580 0.85565 1.90791 1.51126 1.84519 1.15232 1.20156 1.04258 0.94010 0.93940 1.21227 0.93524 0.89993 1.01135 1.20890 1.01727 0.98355 0.92714 1.17835 1.02305 0.79842 0.93932 1.48062 1.48877 1.07154 1.05851 1.23627 1.03131 0.97893 0.87949 1.23297 1.10349 0.92689 0.96442 1.74367 1.11401 1.22951 1.01444 1.82156 1.21878 0.84216 1.15702 1.20871 1.03865 0.91182 0.99560 1.22815 0.95165 0.98097 0.95862 1.23116 1.01479 0.78683 1.00796 0.94772 0.93647 0.98218 0.93649 0.90160 0.90246 0.90918 0.90727 0.83310 0.83654 0.78550 0.79159 0.84396 0.80592 0.90563 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.64 7.58 59.85 0.45 4.09 16 2 N -0.59 -13.46 2.96 -171.03 -0.51 -13.97 16 3 C -0.26 -6.73 9.61 -15.06 -0.14 -6.87 16 4 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 5 C 0.01 0.15 5.20 -17.43 -0.09 0.06 16 6 N -0.91 -25.03 10.52 55.49 0.58 -24.44 16 7 Si 0.91 20.98 29.56 -169.99 -5.02 15.96 16 8 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.17 3.17 3.54 -65.78 -0.23 2.94 16 12 H 0.08 1.48 7.96 -51.93 -0.41 1.06 16 13 C -0.15 -2.23 6.51 -24.89 -0.16 -2.39 16 14 C 0.09 0.99 4.86 -3.06 -0.01 0.97 16 15 N -0.60 -8.68 3.33 -176.47 -0.59 -9.27 16 16 C 0.57 8.43 7.80 -12.40 -0.10 8.34 16 17 O -0.54 -9.88 16.59 5.30 0.09 -9.79 16 18 C -0.12 -1.37 5.87 -104.95 -0.62 -1.98 16 19 C -0.04 -0.42 9.58 -39.22 -0.38 -0.79 16 20 C -0.12 -1.12 9.66 -39.47 -0.38 -1.50 16 21 C 0.15 1.39 6.70 -83.58 -0.56 0.83 16 22 N -0.32 -2.96 3.85 -10.50 -0.04 -3.00 16 23 C 0.02 0.15 10.92 -16.72 -0.18 -0.03 16 24 C -0.07 -0.52 11.86 -18.05 -0.21 -0.73 16 25 N -0.23 -2.54 12.33 30.09 0.37 -2.17 16 26 N -0.06 -0.72 13.15 60.35 0.79 0.08 16 27 C -0.13 -0.97 9.46 -39.47 -0.37 -1.35 16 28 C -0.10 -0.87 8.60 -39.22 -0.34 -1.21 16 29 C 0.08 1.42 6.49 -2.52 -0.02 1.41 16 30 H 0.03 0.83 7.32 -51.93 -0.38 0.45 16 31 H 0.04 1.14 7.31 -51.93 -0.38 0.76 16 32 H 0.00 -0.01 6.34 -51.93 -0.33 -0.34 16 33 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.24 7.08 -51.93 -0.37 0.87 16 36 H 0.07 0.66 6.72 -51.93 -0.35 0.31 16 37 H 0.07 0.66 6.76 -51.93 -0.35 0.31 16 38 H 0.15 1.55 7.66 -52.48 -0.40 1.15 16 39 H 0.15 1.31 7.72 -52.49 -0.41 0.91 16 40 H 0.20 0.37 7.16 -52.49 -0.38 -0.01 16 41 H 0.19 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.14 0.55 6.82 -52.49 -0.36 0.19 16 43 H 0.18 1.28 2.73 -58.68 -0.16 1.12 16 44 H 0.08 1.41 7.98 -51.93 -0.41 0.99 16 45 H 0.07 1.29 6.34 -51.93 -0.33 0.96 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -32.83 366.12 -7.56 -40.38 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.41 Total: -1.07 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.35 Total: 1.78 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.62 Total: -52.77 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.83 -7.56 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972714608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.760 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds