Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36943 * 120.00075 * 2 1 4 4 H 1.07998 * 120.00023 * 204.48866 * 3 2 1 5 5 C 1.38812 * 119.99921 * 24.48472 * 3 2 1 6 6 N 1.31617 * 119.99764 * 7.76232 * 5 3 2 7 7 Si 1.86797 * 120.00058 * 187.76016 * 5 3 2 8 8 H 1.48499 * 109.46846 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47028 * 120.00011 * 7 5 3 10 10 H 1.48501 * 109.46792 * 240.00278 * 7 5 3 11 11 C 1.46496 * 120.00023 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.88720 * 182.42600 * 11 2 1 13 13 C 1.55156 * 111.03871 * 306.33064 * 11 2 1 14 14 C 1.54333 * 103.02414 * 153.39630 * 13 11 2 15 15 N 1.47016 * 107.26435 * 338.13789 * 14 13 11 16 16 C 1.34779 * 125.64906 * 178.84610 * 15 14 13 17 17 O 1.21574 * 120.00069 * 185.81261 * 16 15 14 18 18 C 1.47689 * 119.99876 * 5.81894 * 16 15 14 19 19 C 1.39694 * 120.07909 * 173.04037 * 18 16 15 20 20 C 1.37739 * 119.91763 * 180.02562 * 19 18 16 21 21 C 1.39021 * 120.08221 * 359.97438 * 20 19 18 22 22 N 1.39933 * 119.91983 * 179.97438 * 21 20 19 23 23 C 1.36316 * 126.86337 * 180.29279 * 22 21 20 24 24 C 1.34962 * 106.77578 * 180.18553 * 23 22 21 25 25 N 1.33373 * 109.02166 * 359.58148 * 24 23 22 26 26 N 1.28769 * 109.92096 * 0.25997 * 25 24 23 27 27 C 1.39029 * 120.15868 * 0.25625 * 21 20 19 28 28 C 1.37741 * 120.08180 * 359.48699 * 27 21 20 29 29 C 1.47428 * 108.70720 * 358.58682 * 15 14 13 30 30 H 1.09006 * 109.47074 * 275.25069 * 1 2 3 31 31 H 1.08997 * 109.47304 * 35.24788 * 1 2 3 32 32 H 1.08999 * 109.47482 * 155.25281 * 1 2 3 33 33 H 0.97008 * 119.99915 * 179.97438 * 6 5 3 34 34 H 1.09005 * 110.71864 * 271.95789 * 13 11 2 35 35 H 1.08996 * 110.72233 * 35.22236 * 13 11 2 36 36 H 1.08997 * 109.98967 * 218.66330 * 14 13 11 37 37 H 1.09000 * 109.77819 * 97.49395 * 14 13 11 38 38 H 1.08004 * 120.03986 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.95870 * 179.97438 * 20 19 18 40 40 H 1.07996 * 126.61734 * 0.02562 * 23 22 21 41 41 H 1.08004 * 125.49022 * 179.84491 * 24 23 22 42 42 H 1.08000 * 119.96129 * 179.72637 * 27 21 20 43 43 H 1.07991 * 120.04601 * 180.25424 * 28 27 21 44 44 H 1.09000 * 110.37053 * 143.18957 * 29 15 14 45 45 H 1.08991 * 110.36937 * 265.40863 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1568 1.2280 -0.3877 5 6 1.5493 2.3340 0.4982 6 7 0.3858 2.2563 1.1086 7 14 2.3926 3.9893 0.3025 8 1 3.6800 3.8071 -0.4148 9 1 1.5173 4.9017 -0.4763 10 1 2.6506 4.5748 1.6426 11 6 2.1975 -1.2687 -0.0006 12 1 3.2729 -1.0965 0.0426 13 6 1.7330 -2.1806 1.1657 14 6 2.0341 -3.5996 0.6388 15 7 2.0999 -3.5157 -0.8275 16 6 2.3652 -4.5405 -1.6618 17 8 2.4988 -4.3358 -2.8527 18 6 2.4935 -5.9120 -1.1292 19 6 2.6232 -6.9935 -2.0040 20 6 2.7421 -8.2713 -1.5037 21 6 2.7336 -8.4854 -0.1301 22 7 2.8540 -9.7850 0.3745 23 6 2.8571 -10.1560 1.6861 24 6 2.9989 -11.4980 1.7111 25 7 3.0724 -11.9507 0.4587 26 7 2.9905 -10.9674 -0.3688 27 6 2.5998 -7.4121 0.7434 28 6 2.4858 -6.1309 0.2505 29 6 1.8215 -2.1264 -1.2347 30 1 -0.3633 0.0941 1.0234 31 1 -0.3634 0.8392 -0.5931 32 1 -0.3634 -0.9333 -0.4302 33 1 -0.0337 3.0586 1.4571 34 1 2.3058 -1.9726 2.0695 35 1 0.6653 -2.0594 1.3482 36 1 1.2392 -4.2837 0.9357 37 1 2.9897 -3.9445 1.0336 38 1 2.6295 -6.8279 -3.0712 39 1 2.8420 -9.1079 -2.1793 40 1 2.7664 -9.5020 2.5408 41 1 3.0414 -12.1075 2.6017 42 1 2.5891 -7.5825 1.8098 43 1 2.3860 -5.2972 0.9295 44 1 2.4382 -1.8509 -2.0902 45 1 0.7652 -2.0059 -1.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972714608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = 137.356845 kcal Electronic energy + Delta-G solvation = -28499.197093 eV Core-core repulsion = 24520.533740 eV Total energy + Delta-G solvation = -3978.663354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.23287 -41.68464 -39.90665 -38.82660 -36.69668 -35.56335 -33.62990 -32.57686 -31.71125 -31.46735 -30.95622 -29.24214 -28.05075 -26.43440 -24.99407 -24.67078 -23.92972 -22.56697 -22.17590 -21.09047 -20.91320 -19.49745 -18.95129 -18.50077 -17.59779 -17.06004 -16.91587 -16.46272 -16.18794 -16.17124 -15.78691 -15.30838 -15.13776 -15.12674 -14.95111 -14.69068 -14.45957 -14.22488 -14.19818 -13.94857 -13.58955 -13.45051 -12.99456 -12.89111 -12.79961 -12.53424 -12.39723 -12.25340 -12.21143 -12.12727 -12.06503 -11.94495 -11.62391 -11.38608 -11.10977 -10.65290 -10.45318 -10.25589 -9.80880 -9.54894 -8.76328 -7.83008 -5.33857 -0.83435 0.15116 0.52068 1.06826 1.46792 1.49481 1.54420 1.58422 1.72884 1.83161 2.50908 2.65298 3.25699 3.28528 3.38887 3.50088 3.56894 3.71338 3.84078 3.91176 4.01949 4.06849 4.14758 4.17896 4.23289 4.29995 4.36181 4.42156 4.55007 4.59939 4.75334 4.83276 4.87406 4.90542 4.99740 5.04742 5.09302 5.21463 5.24843 5.26710 5.34779 5.39219 5.45418 5.65810 5.76470 5.79935 6.33356 6.44674 6.99094 7.05541 7.15573 7.85069 8.28390 9.19360 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028748 B = 0.002000 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.730241 B =13995.589023 C =14558.835863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.265 4.265 4 H 0.070 0.930 5 C -0.047 4.047 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.269 1.269 9 H -0.295 1.295 10 H -0.289 1.289 11 C 0.165 3.835 12 H 0.075 0.925 13 C -0.143 4.143 14 C 0.091 3.909 15 N -0.604 5.604 16 C 0.564 3.436 17 O -0.587 6.587 18 C -0.137 4.137 19 C -0.047 4.047 20 C -0.124 4.124 21 C 0.152 3.848 22 N -0.326 5.326 23 C 0.042 3.958 24 C -0.080 4.080 25 N -0.264 5.264 26 N -0.113 5.113 27 C -0.115 4.115 28 C -0.088 4.088 29 C 0.095 3.905 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.027 0.973 33 H 0.248 0.752 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.249 0.751 41 H 0.225 0.775 42 H 0.186 0.814 43 H 0.197 0.803 44 H 0.053 0.947 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -23.797 7.781 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.324 5.324 3 C -0.395 4.395 4 H 0.087 0.913 5 C -0.243 4.243 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.193 1.193 9 H -0.222 1.222 10 H -0.216 1.216 11 C 0.056 3.944 12 H 0.093 0.907 13 C -0.182 4.182 14 C -0.030 4.030 15 N -0.336 5.336 16 C 0.355 3.645 17 O -0.469 6.469 18 C -0.141 4.141 19 C -0.067 4.067 20 C -0.144 4.144 21 C 0.059 3.941 22 N -0.108 5.108 23 C -0.107 4.107 24 C -0.236 4.236 25 N -0.133 5.133 26 N -0.090 5.090 27 C -0.135 4.135 28 C -0.106 4.106 29 C -0.031 4.031 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.265 0.735 41 H 0.241 0.759 42 H 0.203 0.797 43 H 0.214 0.786 44 H 0.071 0.929 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.012 -24.273 5.771 25.271 hybrid contribution 0.007 1.747 0.176 1.755 sum 4.019 -22.527 5.947 23.643 Atomic orbital electron populations 1.20527 0.82591 0.95469 0.98021 1.43947 1.02047 1.00846 1.85515 1.19545 0.99184 0.87027 1.33724 0.91271 1.25771 0.98222 1.01732 0.98536 1.70200 1.18180 1.27842 1.41813 0.85211 0.78104 0.80151 0.77004 1.19334 1.22181 1.21605 1.21546 0.95914 0.84815 0.92088 0.90658 1.23141 1.02600 0.93090 0.99416 1.22856 1.03720 0.98312 0.78123 1.48339 1.68180 1.08478 1.08607 1.18340 0.76345 0.84784 0.84987 1.90762 1.53321 1.85355 1.17422 1.19914 1.06959 0.91637 0.95568 1.21120 0.94316 0.90463 1.00754 1.20849 1.02217 0.97651 0.93724 1.18057 1.01639 0.80528 0.93885 1.48186 1.48932 1.06681 1.06993 1.24543 1.00099 0.98271 0.87798 1.24023 1.09514 0.93839 0.96207 1.74339 1.12080 1.23622 1.03235 1.82159 1.24801 0.85201 1.16795 1.21285 1.01267 0.89475 1.01493 1.22943 0.93976 0.99365 0.94301 1.22716 1.00164 0.80639 0.99546 0.96680 0.97007 0.95452 0.94208 0.88899 0.91239 0.87368 0.87080 0.84578 0.84154 0.73474 0.75888 0.79671 0.78648 0.92862 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.26 7.58 127.77 0.97 9.23 16 2 N -0.60 -27.91 2.96 -695.01 -2.06 -29.97 16 3 C -0.26 -13.80 9.61 84.03 0.81 -13.00 16 4 H 0.07 3.54 7.84 -2.91 -0.02 3.52 16 5 C -0.05 -2.53 5.20 84.86 0.44 -2.09 16 6 N -0.93 -52.61 10.52 21.65 0.23 -52.38 16 7 Si 0.97 43.63 29.56 68.60 2.03 45.65 16 8 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 C 0.17 5.91 3.54 46.39 0.16 6.07 16 12 H 0.08 2.74 7.96 -2.39 -0.02 2.72 16 13 C -0.14 -3.72 6.51 31.79 0.21 -3.52 16 14 C 0.09 1.63 4.86 86.73 0.42 2.05 16 15 N -0.60 -16.33 3.33 -830.49 -2.76 -19.10 16 16 C 0.56 16.41 7.80 86.74 0.68 17.09 16 17 O -0.59 -22.28 16.59 -3.95 -0.07 -22.35 16 18 C -0.14 -2.87 5.87 -20.08 -0.12 -2.98 16 19 C -0.05 -0.98 9.58 22.50 0.22 -0.77 16 20 C -0.12 -2.29 9.66 22.34 0.22 -2.08 16 21 C 0.15 2.27 6.70 38.23 0.26 2.52 16 22 N -0.33 -5.09 3.85 -187.13 -0.72 -5.81 16 23 C 0.04 0.32 10.92 83.24 0.91 1.23 16 24 C -0.08 -0.87 11.86 83.71 0.99 0.13 16 25 N -0.26 -5.46 12.33 -58.72 -0.72 -6.18 16 26 N -0.11 -2.54 13.15 37.02 0.49 -2.05 16 27 C -0.11 -1.02 9.46 22.34 0.21 -0.81 16 28 C -0.09 -1.09 8.60 22.50 0.19 -0.90 16 29 C 0.09 3.23 6.49 86.86 0.56 3.80 16 30 H 0.01 0.75 7.32 -2.38 -0.02 0.73 16 31 H 0.01 0.59 7.31 -2.39 -0.02 0.57 16 32 H 0.03 1.08 6.34 -2.39 -0.02 1.07 16 33 H 0.25 13.65 8.31 -92.70 -0.77 12.87 16 34 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.07 1.99 7.08 -2.39 -0.02 1.97 16 36 H 0.11 1.31 6.72 -2.39 -0.02 1.29 16 37 H 0.11 1.30 6.76 -2.39 -0.02 1.28 16 38 H 0.14 3.07 7.66 -2.91 -0.02 3.05 16 39 H 0.14 2.65 7.72 -2.91 -0.02 2.63 16 40 H 0.25 -1.02 7.16 -2.91 -0.02 -1.04 16 41 H 0.22 0.57 8.06 -2.91 -0.02 0.54 16 42 H 0.19 -0.10 6.82 -2.91 -0.02 -0.12 16 43 H 0.20 1.57 2.73 -8.73 -0.02 1.54 16 44 H 0.05 2.04 7.98 -2.39 -0.02 2.02 16 45 H 0.06 2.17 6.34 -2.39 -0.02 2.15 16 Total: -1.00 -77.68 366.12 4.56 -73.12 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.02 Total: 3.08 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 7.13 Total: 15.98 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -5.55 Total: -115.49 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.07 Total: -22.35 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -77.68 4.56 -73.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972714608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.478 kcal (2) G-P(sol) polarization free energy of solvation -77.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds