Wall clock time and date at job start Sat Apr 11 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99480 * 2 1 4 4 H 1.08001 * 119.99637 * 157.17260 * 3 2 1 5 5 C 1.38808 * 120.00448 * 337.16749 * 3 2 1 6 6 N 1.31616 * 120.00284 * 160.81632 * 5 3 2 7 7 Si 1.86806 * 119.99975 * 340.81973 * 5 3 2 8 8 H 1.48491 * 109.47200 * 84.92415 * 7 5 3 9 9 H 1.48496 * 109.47078 * 204.92942 * 7 5 3 10 10 H 1.48504 * 109.47050 * 324.92622 * 7 5 3 11 11 C 1.46496 * 120.00300 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.64416 * 180.70016 * 11 2 1 13 13 C 1.55156 * 110.72343 * 57.55785 * 11 2 1 14 14 C 1.54914 * 101.58331 * 206.13891 * 13 11 2 15 15 N 1.47426 * 104.83208 * 37.00568 * 14 13 11 16 16 C 1.34778 * 125.64650 * 155.90841 * 15 14 13 17 17 O 1.21576 * 119.99782 * 185.70698 * 16 15 14 18 18 C 1.47683 * 120.00007 * 5.70880 * 16 15 14 19 19 C 1.39694 * 120.07783 * 20.62124 * 18 16 15 20 20 C 1.37747 * 119.91797 * 179.74507 * 19 18 16 21 21 C 1.39031 * 120.07802 * 0.55473 * 20 19 18 22 22 N 1.39928 * 119.92039 * 179.71751 * 21 20 19 23 23 C 1.36316 * 126.86637 * 359.97438 * 22 21 20 24 24 C 1.34969 * 106.77851 * 179.97438 * 23 22 21 25 25 N 1.33372 * 109.01545 * 359.97438 * 24 23 22 26 26 N 1.28768 * 109.92838 * 359.70973 * 25 24 23 27 27 C 1.39026 * 120.15770 * 359.69751 * 21 20 19 28 28 C 1.37740 * 120.08288 * 0.02562 * 27 21 20 29 29 C 1.47319 * 108.73697 * 335.72192 * 15 14 13 30 30 H 1.09010 * 109.47300 * 88.58402 * 1 2 3 31 31 H 1.09002 * 109.47500 * 328.58223 * 1 2 3 32 32 H 1.09007 * 109.47460 * 208.57998 * 1 2 3 33 33 H 0.97004 * 120.00085 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00137 * 324.20882 * 13 11 2 35 35 H 1.08995 * 111.00773 * 88.05969 * 13 11 2 36 36 H 1.08995 * 110.36775 * 155.84631 * 14 13 11 37 37 H 1.08995 * 110.36206 * 278.16938 * 14 13 11 38 38 H 1.07996 * 120.04090 * 0.02562 * 19 18 16 39 39 H 1.07991 * 119.96133 * 180.24992 * 20 19 18 40 40 H 1.07996 * 126.61112 * 0.02562 * 23 22 21 41 41 H 1.07996 * 125.48791 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.95825 * 179.97438 * 27 21 20 43 43 H 1.08001 * 120.04127 * 179.97438 * 28 27 21 44 44 H 1.09002 * 110.06187 * 241.87197 * 29 15 14 45 45 H 1.08993 * 109.85172 * 120.61191 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1661 1.2226 0.3629 5 6 1.5371 2.3410 -0.4664 6 7 2.0166 3.5206 -0.1335 7 14 0.0322 2.2212 -1.5667 8 1 -1.1849 2.0832 -0.7273 9 1 -0.0743 3.4489 -2.3952 10 1 0.1596 1.0359 -2.4523 11 6 2.1975 -1.2687 -0.0006 12 1 3.2729 -1.0915 0.0120 13 6 1.7979 -2.1328 -1.2256 14 6 2.0903 -3.5627 -0.7063 15 7 1.7031 -3.5342 0.7159 16 6 1.3468 -4.6038 1.4546 17 8 0.9461 -4.4506 2.5921 18 6 1.4430 -5.9617 0.8821 19 6 2.2756 -6.2022 -0.2136 20 6 2.3669 -7.4711 -0.7416 21 6 1.6229 -8.5095 -0.1927 22 7 1.7137 -9.7960 -0.7355 23 6 2.4805 -10.1852 -1.7933 24 6 2.2598 -11.5049 -1.9698 25 7 1.3862 -11.9257 -1.0541 26 7 1.0394 -10.9451 -0.2950 27 6 0.7893 -8.2727 0.8944 28 6 0.6973 -7.0075 1.4312 29 6 1.7743 -2.1439 1.1980 30 1 -0.3634 0.0254 -1.0274 31 1 -0.3634 0.8770 0.5357 32 1 -0.3634 -0.9025 0.4916 33 1 1.5883 4.3278 -0.4592 34 1 0.7406 -2.0114 -1.4612 35 1 2.4187 -1.8964 -2.0898 36 1 1.4900 -4.2933 -1.2483 37 1 3.1510 -3.7930 -0.8062 38 1 2.8504 -5.3952 -0.6432 39 1 3.0134 -7.6587 -1.5861 40 1 3.1384 -9.5584 -2.3769 41 1 2.7169 -12.1208 -2.7301 42 1 0.2125 -9.0815 1.3180 43 1 0.0492 -6.8242 2.2755 44 1 2.5127 -2.0621 1.9957 45 1 0.7966 -1.8276 1.5611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972714609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:18 Heat of formation + Delta-G solvation = 153.320505 kcal Electronic energy + Delta-G solvation = -28632.364242 eV Core-core repulsion = 24654.393125 eV Total energy + Delta-G solvation = -3977.971117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.68175 -40.70325 -39.10333 -37.67654 -35.30155 -34.84840 -32.27352 -31.73038 -31.11373 -30.67375 -30.06931 -28.36423 -26.42070 -25.53048 -24.01232 -23.83346 -22.75214 -21.95585 -21.56779 -20.12187 -19.48699 -18.97731 -17.55071 -17.13633 -16.44554 -16.33278 -16.13198 -15.71584 -15.52907 -15.20962 -14.71052 -14.57203 -14.42165 -14.23904 -13.99945 -13.56844 -13.34548 -13.26368 -13.19480 -12.73908 -12.50023 -12.37676 -12.08653 -11.93509 -11.90451 -11.69987 -11.54190 -11.39215 -11.17151 -10.88943 -10.36124 -10.27196 -10.07679 -10.03869 -9.93183 -9.64811 -9.51357 -8.98050 -8.78578 -8.59442 -7.18702 -6.03483 -3.41915 -0.18657 0.73856 1.15354 1.59026 2.04643 2.58087 2.86137 3.28025 3.36614 3.40058 3.44190 3.82715 3.92973 4.20389 4.22433 4.37218 4.44524 4.50822 4.59949 4.67889 4.71671 4.85319 4.94538 5.02697 5.03817 5.13495 5.32485 5.37614 5.40800 5.50453 5.55475 5.59385 5.69451 5.74438 5.84999 5.95403 5.97463 6.09673 6.15080 6.25413 6.28672 6.35416 6.47473 6.55349 6.66145 7.45688 7.61299 7.79179 8.04938 8.20976 8.80185 9.60781 9.89798 11.12008 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.002135 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.541326 B =13112.731677 C =13567.973513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.596 5.596 3 C -0.270 4.270 4 H 0.090 0.910 5 C 0.025 3.975 6 N -0.906 5.906 7 Si 0.898 3.102 8 H -0.288 1.288 9 H -0.307 1.307 10 H -0.278 1.278 11 C 0.175 3.825 12 H 0.091 0.909 13 C -0.157 4.157 14 C 0.092 3.908 15 N -0.607 5.607 16 C 0.567 3.433 17 O -0.535 6.535 18 C -0.119 4.119 19 C -0.078 4.078 20 C -0.134 4.134 21 C 0.155 3.845 22 N -0.319 5.319 23 C 0.024 3.976 24 C -0.072 4.072 25 N -0.231 5.231 26 N -0.061 5.061 27 C -0.115 4.115 28 C -0.040 4.040 29 C 0.087 3.913 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.158 0.842 39 H 0.139 0.861 40 H 0.198 0.802 41 H 0.192 0.808 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.070 0.930 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -25.616 -5.730 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.317 5.317 3 C -0.397 4.397 4 H 0.108 0.892 5 C -0.174 4.174 6 N -0.549 5.549 7 Si 0.730 3.270 8 H -0.215 1.215 9 H -0.235 1.235 10 H -0.204 1.204 11 C 0.065 3.935 12 H 0.109 0.891 13 C -0.197 4.197 14 C -0.031 4.031 15 N -0.340 5.340 16 C 0.356 3.644 17 O -0.413 6.413 18 C -0.123 4.123 19 C -0.096 4.096 20 C -0.155 4.155 21 C 0.062 3.938 22 N -0.100 5.100 23 C -0.126 4.126 24 C -0.227 4.227 25 N -0.101 5.101 26 N -0.039 5.039 27 C -0.135 4.135 28 C -0.059 4.059 29 C -0.037 4.037 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.175 0.825 39 H 0.157 0.843 40 H 0.215 0.785 41 H 0.209 0.791 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.088 0.912 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.255 -25.975 -4.079 26.323 hybrid contribution -0.085 0.494 -1.561 1.640 sum 1.170 -25.481 -5.640 26.123 Atomic orbital electron populations 1.21508 0.84694 1.00684 0.98404 1.44097 1.00570 1.01562 1.85452 1.18920 0.99781 0.83614 1.37428 0.89233 1.25160 0.98211 0.95052 0.99017 1.69816 1.42425 0.97072 1.45571 0.86916 0.83171 0.75465 0.81440 1.21517 1.23524 1.20389 1.21356 0.96976 0.85119 0.90037 0.89138 1.23465 1.02949 0.92801 1.00504 1.22722 0.99442 0.99557 0.81381 1.48450 1.65969 1.07830 1.11723 1.17787 0.78113 0.83332 0.85211 1.90809 1.46330 1.85901 1.18256 1.20135 1.00215 0.94357 0.97620 1.21924 0.96940 0.96893 0.93879 1.20824 1.01017 0.91634 1.02016 1.17789 0.99510 0.80451 0.96018 1.48056 1.31049 1.08472 1.22445 1.23627 0.98666 0.97745 0.92556 1.23304 1.02619 0.93556 1.03228 1.74368 1.10169 1.22156 1.03401 1.82165 1.16877 0.85783 1.19060 1.20900 0.99110 0.98256 0.95271 1.21210 0.96362 0.90201 0.98122 1.22829 1.02811 0.78924 0.99143 0.96738 0.92098 0.94149 0.92606 0.90691 0.89705 0.90513 0.90786 0.82485 0.84319 0.78546 0.79135 0.83580 0.83377 0.91202 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.91 7.04 59.85 0.42 2.33 16 2 N -0.60 -12.99 2.76 -171.39 -0.47 -13.46 16 3 C -0.27 -7.07 10.04 -15.06 -0.15 -7.22 16 4 H 0.09 2.49 8.04 -52.49 -0.42 2.07 16 5 C 0.02 0.69 5.28 -17.43 -0.09 0.60 16 6 N -0.91 -26.89 13.97 55.49 0.78 -26.11 16 7 Si 0.90 21.80 23.89 -169.99 -4.06 17.74 16 8 H -0.29 -6.78 6.42 56.52 0.36 -6.42 16 9 H -0.31 -7.64 7.11 56.52 0.40 -7.24 16 10 H -0.28 -6.53 6.54 56.52 0.37 -6.16 16 11 C 0.18 2.96 3.43 -66.10 -0.23 2.74 16 12 H 0.09 1.52 7.93 -51.93 -0.41 1.11 16 13 C -0.16 -2.12 6.65 -24.58 -0.16 -2.28 16 14 C 0.09 0.94 4.94 -2.53 -0.01 0.93 16 15 N -0.61 -8.16 3.33 -171.45 -0.57 -8.73 16 16 C 0.57 7.99 7.68 -12.40 -0.10 7.90 16 17 O -0.53 -9.51 16.87 5.30 0.09 -9.42 16 18 C -0.12 -1.27 5.74 -104.95 -0.60 -1.87 16 19 C -0.08 -0.60 8.08 -39.22 -0.32 -0.92 16 20 C -0.13 -0.87 9.46 -39.47 -0.37 -1.25 16 21 C 0.15 1.31 6.70 -83.58 -0.56 0.75 16 22 N -0.32 -2.80 3.85 -10.50 -0.04 -2.84 16 23 C 0.02 0.14 10.92 -16.72 -0.18 -0.05 16 24 C -0.07 -0.48 11.86 -18.04 -0.21 -0.70 16 25 N -0.23 -2.44 12.33 30.09 0.37 -2.07 16 26 N -0.06 -0.68 13.15 60.35 0.79 0.11 16 27 C -0.12 -1.04 9.66 -39.47 -0.38 -1.42 16 28 C -0.04 -0.39 9.58 -39.22 -0.38 -0.77 16 29 C 0.09 1.39 6.44 -2.90 -0.02 1.37 16 30 H 0.01 0.31 4.96 -51.92 -0.26 0.06 16 31 H 0.06 1.38 5.98 -51.93 -0.31 1.07 16 32 H 0.04 0.74 6.28 -51.93 -0.33 0.41 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.07 1.11 7.22 -51.93 -0.38 0.74 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.65 6.63 -51.93 -0.34 0.30 16 37 H 0.07 0.58 6.90 -51.93 -0.36 0.22 16 38 H 0.16 0.98 4.22 -52.49 -0.22 0.76 16 39 H 0.14 0.45 6.82 -52.49 -0.36 0.10 16 40 H 0.20 0.26 7.16 -52.49 -0.38 -0.11 16 41 H 0.19 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.15 1.24 7.72 -52.49 -0.41 0.84 16 43 H 0.15 1.44 7.79 -52.49 -0.41 1.03 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.37 6.14 -51.93 -0.32 1.05 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -34.36 360.16 -6.40 -40.76 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.37 Total: -1.54 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.34 Total: 0.13 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.85 Total: -53.11 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.06 Total: 17.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.36 -6.40 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972714609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.085 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds