Wall clock time and date at job start Sat Apr 11 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34784 * 119.99760 * 2 1 4 4 O 1.21605 * 119.99534 * 184.02650 * 3 2 1 5 5 C 1.47412 * 120.00035 * 4.03540 * 3 2 1 6 6 C 1.41330 * 126.40764 * 352.24612 * 5 3 2 7 7 N 1.30474 * 108.06492 * 179.82126 * 6 5 3 8 8 N 1.39935 * 108.91524 * 0.44463 * 7 6 5 9 9 C 1.40169 * 125.77498 * 179.71655 * 8 7 6 10 10 C 1.39272 * 120.48427 * 4.71815 * 9 8 7 11 11 C 1.38504 * 118.36194 * 179.76155 * 10 9 8 12 12 C 1.38265 * 119.23421 * 0.51677 * 11 10 9 13 13 N 1.31866 * 120.91197 * 359.72103 * 12 11 10 14 14 C 1.31819 * 121.79058 * 0.02654 * 13 12 11 15 15 C 1.34540 * 108.45679 * 359.71217 * 8 7 6 16 16 C 1.46501 * 120.00174 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.77550 * 190.37217 * 16 2 1 18 18 C 1.55155 * 110.72179 * 67.13671 * 16 2 1 19 19 C 1.54910 * 101.61566 * 277.11984 * 18 16 2 20 20 N 1.47468 * 104.81093 * 323.04511 * 19 18 16 21 21 C 1.36939 * 125.62893 * 204.14753 * 20 19 18 22 22 H 1.07998 * 120.00352 * 179.91409 * 21 20 19 23 23 C 1.38816 * 119.99847 * 359.90720 * 21 20 19 24 24 N 1.31623 * 119.99909 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99911 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47000 * 89.99947 * 25 23 21 27 27 H 1.48498 * 109.47137 * 210.00038 * 25 23 21 28 28 H 1.48498 * 109.46931 * 330.00223 * 25 23 21 29 29 C 1.47015 * 108.72204 * 24.06818 * 20 19 18 30 30 H 1.09002 * 109.46650 * 183.54604 * 1 2 3 31 31 H 1.08996 * 109.46612 * 303.54451 * 1 2 3 32 32 H 1.08997 * 109.47115 * 63.54434 * 1 2 3 33 33 H 1.08003 * 125.96677 * 359.97438 * 6 5 3 34 34 H 1.07998 * 120.81325 * 0.02562 * 10 9 8 35 35 H 1.08002 * 120.38299 * 180.24366 * 11 10 9 36 36 H 1.08003 * 119.54630 * 179.74624 * 12 11 10 37 37 H 1.08001 * 119.66226 * 180.02562 * 14 13 12 38 38 H 1.07998 * 126.31137 * 180.02562 * 15 8 7 39 39 H 1.09008 * 111.00374 * 35.21274 * 18 16 2 40 40 H 1.08991 * 111.00664 * 159.02284 * 18 16 2 41 41 H 1.09009 * 110.36683 * 81.84521 * 19 18 16 42 42 H 1.08998 * 110.36830 * 204.16586 * 19 18 16 43 43 H 0.96997 * 119.99436 * 179.97438 * 24 23 21 44 44 H 1.08999 * 109.88698 * 239.55979 * 29 20 19 45 45 H 1.09000 * 109.88342 * 118.39776 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3527 1.1685 -0.0740 5 6 1.4045 2.4423 0.0898 6 6 0.0025 2.6090 0.0275 7 7 -0.2594 3.8815 0.1478 8 7 0.9447 4.5819 0.2806 9 6 1.0735 5.9700 0.4266 10 6 -0.0562 6.7755 0.5481 11 6 0.1222 8.1411 0.6953 12 6 1.4048 8.6573 0.7058 13 7 2.4538 7.8677 0.5834 14 6 2.3285 6.5627 0.4463 15 6 1.9580 3.6976 0.2445 16 6 2.1976 -1.2687 -0.0006 17 1 3.2591 -1.1024 0.1830 18 6 1.9838 -2.0255 -1.3381 19 6 0.6290 -2.7322 -1.0835 20 7 0.6690 -3.1232 0.3378 21 6 -0.0489 -4.1419 0.9054 22 1 0.0516 -4.3510 1.9602 23 6 -0.9060 -4.9057 0.1251 24 7 -1.0283 -4.6511 -1.1605 25 14 -1.8858 -6.2948 0.8995 26 1 -3.1900 -5.7724 1.3804 27 1 -2.1204 -7.3579 -0.1104 28 1 -1.1259 -6.8583 2.0441 29 6 1.6083 -2.2398 1.0440 30 1 -0.3633 -1.0257 0.0636 31 1 -0.3632 0.5679 0.8565 32 1 -0.3633 0.4578 -0.9200 33 1 -0.7252 1.8204 -0.0954 34 1 -1.0466 6.3452 0.5324 35 1 -0.7309 8.7956 0.7962 36 1 1.5496 9.7219 0.8161 37 1 3.2114 5.9482 0.3492 38 1 3.0104 3.9273 0.3226 39 1 1.9104 -1.3292 -2.1736 40 1 2.7780 -2.7525 -1.5069 41 1 -0.1974 -2.0446 -1.2643 42 1 0.5358 -3.6137 -1.7178 43 1 -1.6269 -5.1851 -1.7058 44 1 2.4068 -2.8306 1.4928 45 1 1.0810 -1.6789 1.8156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033139921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:21 Heat of formation + Delta-G solvation = 148.627687 kcal Electronic energy + Delta-G solvation = -28904.314294 eV Core-core repulsion = 24926.139681 eV Total energy + Delta-G solvation = -3978.174613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10308 -40.47251 -39.50222 -37.34636 -34.88615 -34.15586 -32.82191 -32.17480 -30.64595 -30.01531 -29.11897 -27.91686 -26.56075 -24.97569 -24.40346 -24.21080 -22.38649 -21.41562 -20.35237 -20.06896 -19.21117 -18.33065 -17.40811 -17.01328 -16.83966 -16.30230 -15.97002 -15.72428 -15.31763 -15.00570 -14.70189 -14.47767 -14.13176 -14.04576 -13.80299 -13.68924 -13.29658 -12.92322 -12.68579 -12.51832 -12.32254 -11.88659 -11.66057 -11.46911 -11.44208 -11.18201 -11.04548 -10.90843 -10.81290 -10.30737 -10.25991 -10.15420 -10.11755 -9.90466 -9.59862 -9.52165 -9.49757 -8.71017 -8.64725 -8.24290 -6.90437 -5.70623 -3.13108 0.12063 0.61817 1.54847 1.81371 2.00208 3.21848 3.24447 3.36854 3.42727 3.44245 3.47229 3.84702 3.96852 4.11601 4.38523 4.42851 4.44911 4.60396 4.74432 4.88528 4.95972 5.10334 5.28170 5.39461 5.41315 5.47175 5.49491 5.50135 5.53242 5.69014 5.75370 5.87922 5.89399 6.12154 6.17712 6.29638 6.36393 6.55471 6.56418 6.60220 6.70111 7.02250 7.16819 7.32836 7.42079 7.58251 7.70812 7.81362 8.30175 8.40912 9.16335 9.76735 10.40670 11.32703 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.002187 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.323625 B =12799.487933 C =13467.516277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.585 5.585 3 C 0.590 3.410 4 O -0.555 6.555 5 C -0.265 4.265 6 C 0.078 3.922 7 N -0.295 5.295 8 N -0.316 5.316 9 C 0.109 3.891 10 C -0.073 4.073 11 C -0.147 4.147 12 C 0.086 3.914 13 N -0.457 5.457 14 C 0.087 3.913 15 C 0.121 3.879 16 C 0.128 3.872 17 H 0.100 0.900 18 C -0.155 4.155 19 C 0.146 3.854 20 N -0.603 5.603 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.127 3.873 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.219 0.781 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.193 0.807 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.020 0.980 42 H 0.106 0.894 43 H 0.252 0.748 44 H 0.035 0.965 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 23.696 1.909 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.316 5.316 3 C 0.379 3.621 4 O -0.435 6.435 5 C -0.279 4.279 6 C -0.110 4.110 7 N -0.112 5.112 8 N -0.089 5.089 9 C 0.014 3.986 10 C -0.100 4.100 11 C -0.167 4.167 12 C -0.071 4.071 13 N -0.165 5.165 14 C -0.073 4.073 15 C -0.025 4.025 16 C 0.025 3.975 17 H 0.118 0.882 18 C -0.195 4.195 19 C 0.021 3.979 20 N -0.330 5.330 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.000 4.000 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.182 0.818 37 H 0.181 0.819 38 H 0.210 0.790 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.038 0.962 42 H 0.124 0.876 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.654 24.820 1.884 25.032 hybrid contribution -0.941 -1.686 0.342 1.961 sum 1.713 23.133 2.226 23.303 Atomic orbital electron populations 1.22628 0.79755 1.06983 0.99774 1.47541 1.07036 1.05235 1.71758 1.17153 0.86288 0.82403 0.76273 1.90742 1.13424 1.87335 1.51956 1.20403 0.93598 0.94002 1.19851 1.25574 0.96140 0.94173 0.95128 1.77299 1.03106 1.05991 1.24848 1.45570 1.05409 1.04104 1.53817 1.18716 0.96438 0.80030 1.03376 1.21440 0.98876 0.93213 0.96500 1.22153 0.99442 0.94885 1.00218 1.22916 0.87950 1.00451 0.95775 1.67788 1.34102 1.03727 1.10844 1.22646 0.94788 0.91690 0.98191 1.22995 0.95111 0.88142 0.96236 1.22159 0.96197 0.81789 0.97363 0.88246 1.23385 1.01788 0.98903 0.95403 1.22093 0.89985 0.98965 0.86810 1.44586 1.48311 1.35258 1.04856 1.19064 1.16813 1.05938 0.93318 0.90468 1.24781 1.00097 0.99802 0.95847 1.69800 1.40844 1.41851 1.04469 0.86081 0.79929 0.81611 0.77908 1.21647 1.21695 1.20731 1.21626 0.93317 0.91365 0.93683 0.86329 0.92129 0.92237 0.76526 0.83068 0.83570 0.81847 0.81875 0.79024 0.92019 0.91071 0.96242 0.87593 0.93695 0.94747 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 6.98 59.85 0.42 1.17 16 2 N -0.59 -9.54 2.84 -173.11 -0.49 -10.04 16 3 C 0.59 9.56 7.67 -12.52 -0.10 9.46 16 4 O -0.55 -10.35 16.33 5.27 0.09 -10.27 16 5 C -0.26 -3.57 6.03 -105.05 -0.63 -4.20 16 6 C 0.08 0.95 9.90 -16.95 -0.17 0.78 16 7 N -0.30 -3.68 11.86 30.87 0.37 -3.31 16 8 N -0.32 -3.59 3.77 -10.11 -0.04 -3.63 16 9 C 0.11 1.05 6.70 -83.45 -0.56 0.50 16 10 C -0.07 -0.59 9.78 -39.10 -0.38 -0.97 16 11 C -0.15 -0.86 10.10 -39.47 -0.40 -1.26 16 12 C 0.09 0.56 11.18 -17.53 -0.20 0.36 16 13 N -0.46 -4.05 10.35 -13.10 -0.14 -4.18 16 14 C 0.09 0.76 10.62 -17.35 -0.18 0.58 16 15 C 0.12 1.40 10.62 -16.43 -0.17 1.23 16 16 C 0.13 2.31 3.52 -66.10 -0.23 2.08 16 17 H 0.10 1.80 7.10 -51.93 -0.37 1.43 16 18 C -0.16 -2.93 6.69 -24.58 -0.16 -3.09 16 19 C 0.15 3.29 5.01 -2.50 -0.01 3.28 16 20 N -0.60 -14.39 2.85 -170.04 -0.48 -14.87 16 21 C -0.22 -5.89 10.27 -15.06 -0.15 -6.04 16 22 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 23 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 24 N -0.92 -25.57 10.09 55.49 0.56 -25.01 16 25 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.13 2.55 6.17 -3.07 -0.02 2.53 16 30 H 0.12 2.16 4.22 -51.93 -0.22 1.94 16 31 H 0.06 0.76 6.24 -51.93 -0.32 0.44 16 32 H 0.06 0.76 6.71 -51.93 -0.35 0.41 16 33 H 0.22 2.29 4.21 -52.48 -0.22 2.06 16 34 H 0.15 1.20 7.78 -52.49 -0.41 0.79 16 35 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.16 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.16 1.12 6.76 -52.49 -0.35 0.77 16 38 H 0.19 1.71 7.06 -52.49 -0.37 1.34 16 39 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.45 5.93 -51.92 -0.31 0.14 16 42 H 0.11 2.76 5.88 -51.93 -0.31 2.46 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.58 7.71 -51.93 -0.40 0.18 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -32.31 361.96 -8.05 -40.36 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.29 Total: 3.15 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -3.05 Total: 6.03 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.22 Total: -61.04 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.31 -8.05 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033139921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.984 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds