Wall clock time and date at job start Sat Apr 11 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34784 * 119.99760 * 2 1 4 4 O 1.21605 * 119.99534 * 184.02650 * 3 2 1 5 5 C 1.47412 * 120.00035 * 4.03540 * 3 2 1 6 6 C 1.41330 * 126.40764 * 352.24612 * 5 3 2 7 7 N 1.30474 * 108.06492 * 179.82126 * 6 5 3 8 8 N 1.39935 * 108.91524 * 0.44463 * 7 6 5 9 9 C 1.40169 * 125.77498 * 179.71655 * 8 7 6 10 10 C 1.39272 * 120.48427 * 4.71815 * 9 8 7 11 11 C 1.38504 * 118.36194 * 179.76155 * 10 9 8 12 12 C 1.38265 * 119.23421 * 0.51677 * 11 10 9 13 13 N 1.31866 * 120.91197 * 359.72103 * 12 11 10 14 14 C 1.31819 * 121.79058 * 0.02654 * 13 12 11 15 15 C 1.34540 * 108.45679 * 359.71217 * 8 7 6 16 16 C 1.46501 * 120.00174 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.77550 * 190.37217 * 16 2 1 18 18 C 1.55155 * 110.72179 * 67.13671 * 16 2 1 19 19 C 1.54910 * 101.61566 * 277.11984 * 18 16 2 20 20 N 1.47468 * 104.81093 * 323.04511 * 19 18 16 21 21 C 1.36939 * 125.62893 * 204.14753 * 20 19 18 22 22 H 1.07998 * 120.00352 * 179.91409 * 21 20 19 23 23 C 1.38816 * 119.99847 * 359.90720 * 21 20 19 24 24 N 1.31623 * 119.99909 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99911 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47000 * 89.99947 * 25 23 21 27 27 H 1.48498 * 109.47137 * 210.00038 * 25 23 21 28 28 H 1.48498 * 109.46931 * 330.00223 * 25 23 21 29 29 C 1.47015 * 108.72204 * 24.06818 * 20 19 18 30 30 H 1.09002 * 109.46650 * 183.54604 * 1 2 3 31 31 H 1.08996 * 109.46612 * 303.54451 * 1 2 3 32 32 H 1.08997 * 109.47115 * 63.54434 * 1 2 3 33 33 H 1.08003 * 125.96677 * 359.97438 * 6 5 3 34 34 H 1.07998 * 120.81325 * 0.02562 * 10 9 8 35 35 H 1.08002 * 120.38299 * 180.24366 * 11 10 9 36 36 H 1.08003 * 119.54630 * 179.74624 * 12 11 10 37 37 H 1.08001 * 119.66226 * 180.02562 * 14 13 12 38 38 H 1.07998 * 126.31137 * 180.02562 * 15 8 7 39 39 H 1.09008 * 111.00374 * 35.21274 * 18 16 2 40 40 H 1.08991 * 111.00664 * 159.02284 * 18 16 2 41 41 H 1.09009 * 110.36683 * 81.84521 * 19 18 16 42 42 H 1.08998 * 110.36830 * 204.16586 * 19 18 16 43 43 H 0.96997 * 119.99436 * 179.97438 * 24 23 21 44 44 H 1.08999 * 109.88698 * 239.55979 * 29 20 19 45 45 H 1.09000 * 109.88342 * 118.39776 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3527 1.1685 -0.0740 5 6 1.4045 2.4423 0.0898 6 6 0.0025 2.6090 0.0275 7 7 -0.2594 3.8815 0.1478 8 7 0.9447 4.5819 0.2806 9 6 1.0735 5.9700 0.4266 10 6 -0.0562 6.7755 0.5481 11 6 0.1222 8.1411 0.6953 12 6 1.4048 8.6573 0.7058 13 7 2.4538 7.8677 0.5834 14 6 2.3285 6.5627 0.4463 15 6 1.9580 3.6976 0.2445 16 6 2.1976 -1.2687 -0.0006 17 1 3.2591 -1.1024 0.1830 18 6 1.9838 -2.0255 -1.3381 19 6 0.6290 -2.7322 -1.0835 20 7 0.6690 -3.1232 0.3378 21 6 -0.0489 -4.1419 0.9054 22 1 0.0516 -4.3510 1.9602 23 6 -0.9060 -4.9057 0.1251 24 7 -1.0283 -4.6511 -1.1605 25 14 -1.8858 -6.2948 0.8995 26 1 -3.1900 -5.7724 1.3804 27 1 -2.1204 -7.3579 -0.1104 28 1 -1.1259 -6.8583 2.0441 29 6 1.6083 -2.2398 1.0440 30 1 -0.3633 -1.0257 0.0636 31 1 -0.3632 0.5679 0.8565 32 1 -0.3633 0.4578 -0.9200 33 1 -0.7252 1.8204 -0.0954 34 1 -1.0466 6.3452 0.5324 35 1 -0.7309 8.7956 0.7962 36 1 1.5496 9.7219 0.8161 37 1 3.2114 5.9482 0.3492 38 1 3.0104 3.9273 0.3226 39 1 1.9104 -1.3292 -2.1736 40 1 2.7780 -2.7525 -1.5069 41 1 -0.1974 -2.0446 -1.2643 42 1 0.5358 -3.6137 -1.7178 43 1 -1.6269 -5.1851 -1.7058 44 1 2.4068 -2.8306 1.4928 45 1 1.0810 -1.6789 1.8156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033139921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:20 Heat of formation + Delta-G solvation = 129.113380 kcal Electronic energy + Delta-G solvation = -28905.160498 eV Core-core repulsion = 24926.139681 eV Total energy + Delta-G solvation = -3979.020817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.97939 -41.27419 -40.67504 -38.87019 -36.14082 -35.22864 -33.92988 -33.38801 -31.65877 -31.20915 -30.47371 -29.37596 -27.96821 -26.37819 -25.50049 -25.00795 -23.40336 -22.33946 -21.91044 -21.41994 -20.38155 -19.30803 -18.89122 -18.11967 -17.71374 -17.48471 -16.90625 -16.71448 -16.66700 -16.14861 -16.12301 -15.59920 -15.52247 -15.07977 -14.79984 -14.45325 -14.32730 -14.16546 -13.95840 -13.77539 -13.56391 -13.35572 -13.21695 -12.92865 -12.79281 -12.74139 -12.43861 -12.37236 -12.00392 -11.91945 -11.85575 -11.71228 -11.39559 -10.88482 -10.84455 -10.70732 -10.65267 -10.39048 -9.63734 -9.40976 -8.84446 -7.72760 -5.16587 -0.55973 0.05753 0.66810 1.00625 1.06856 1.51073 1.51757 1.60228 1.97872 2.29977 2.53059 2.67872 3.16132 3.30676 3.37982 3.53202 3.63435 3.69224 3.78534 3.82854 3.92039 3.92485 4.05489 4.22236 4.25713 4.29021 4.34483 4.45638 4.56488 4.58393 4.68637 4.72842 4.87040 4.91127 4.96861 5.00002 5.07018 5.16346 5.19508 5.38012 5.51664 5.61460 5.68881 5.79283 5.86913 6.26942 6.35323 6.45111 6.76576 7.14205 7.16015 7.81281 8.44914 9.28299 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.002187 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.323625 B =12799.487933 C =13467.516277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.588 5.588 3 C 0.594 3.406 4 O -0.584 6.584 5 C -0.290 4.290 6 C 0.080 3.920 7 N -0.309 5.309 8 N -0.311 5.311 9 C 0.080 3.920 10 C -0.080 4.080 11 C -0.136 4.136 12 C 0.090 3.910 13 N -0.480 5.480 14 C 0.084 3.916 15 C 0.133 3.867 16 C 0.141 3.859 17 H 0.103 0.897 18 C -0.142 4.142 19 C 0.154 3.846 20 N -0.618 5.618 21 C -0.233 4.233 22 H 0.079 0.921 23 C -0.061 4.061 24 N -0.944 5.944 25 Si 0.975 3.025 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.274 1.274 29 C 0.129 3.871 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.230 0.770 34 H 0.150 0.850 35 H 0.181 0.819 36 H 0.196 0.804 37 H 0.175 0.825 38 H 0.214 0.786 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.014 0.986 42 H 0.070 0.930 43 H 0.246 0.754 44 H 0.036 0.964 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 26.291 2.670 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.318 5.318 3 C 0.384 3.616 4 O -0.466 6.466 5 C -0.304 4.304 6 C -0.108 4.108 7 N -0.127 5.127 8 N -0.083 5.083 9 C -0.014 4.014 10 C -0.108 4.108 11 C -0.156 4.156 12 C -0.067 4.067 13 N -0.189 5.189 14 C -0.075 4.075 15 C -0.015 4.015 16 C 0.037 3.963 17 H 0.121 0.879 18 C -0.181 4.181 19 C 0.029 3.971 20 N -0.345 5.345 21 C -0.362 4.362 22 H 0.097 0.903 23 C -0.254 4.254 24 N -0.594 5.594 25 Si 0.804 3.196 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.199 1.199 29 C 0.003 3.997 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.245 0.755 34 H 0.168 0.832 35 H 0.198 0.802 36 H 0.213 0.787 37 H 0.192 0.808 38 H 0.231 0.769 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.032 0.968 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.482 27.456 2.665 27.696 hybrid contribution -0.882 -2.273 0.144 2.442 sum 1.600 25.183 2.808 25.390 Atomic orbital electron populations 1.22627 0.78793 1.05295 1.01856 1.47539 1.07566 1.04764 1.71968 1.17412 0.85989 0.82898 0.75279 1.90719 1.14672 1.87756 1.53443 1.20191 0.94099 0.93377 1.22703 1.25684 0.95836 0.94441 0.94798 1.77260 1.03936 1.06049 1.25421 1.45677 1.04955 1.04816 1.52830 1.18971 0.97484 0.79281 1.05663 1.21647 0.98463 0.94251 0.96402 1.22510 1.00467 0.94187 0.98409 1.23540 0.87678 1.01742 0.93763 1.67851 1.35330 1.03846 1.11853 1.22832 0.94890 0.92005 0.97791 1.23330 0.96108 0.87624 0.94453 1.21899 0.96406 0.82191 0.95836 0.87878 1.23232 0.99555 0.98912 0.96433 1.21850 0.91876 0.97574 0.85779 1.44756 1.48630 1.35370 1.05708 1.19368 1.16833 1.06432 0.93567 0.90327 1.25513 1.01435 1.02100 0.96387 1.70034 1.41359 1.42607 1.05421 0.85123 0.78600 0.78789 0.77049 1.21366 1.22342 1.19880 1.21680 0.92612 0.91293 0.94111 0.89668 0.89976 0.90254 0.75452 0.83182 0.80194 0.78725 0.80833 0.76907 0.90740 0.90927 0.96773 0.91221 0.94383 0.94650 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.61 6.98 127.77 0.89 2.50 16 2 N -0.59 -18.75 2.84 -819.84 -2.33 -21.08 16 3 C 0.59 18.70 7.67 86.66 0.66 19.36 16 4 O -0.58 -21.37 16.33 -4.05 -0.07 -21.44 16 5 C -0.29 -7.49 6.03 -20.14 -0.12 -7.61 16 6 C 0.08 1.86 9.90 85.66 0.85 2.71 16 7 N -0.31 -7.33 11.86 -56.23 -0.67 -8.00 16 8 N -0.31 -6.67 3.77 -185.90 -0.70 -7.37 16 9 C 0.08 1.43 6.70 38.19 0.26 1.68 16 10 C -0.08 -1.15 9.78 22.58 0.22 -0.93 16 11 C -0.14 -1.17 10.10 22.34 0.23 -0.94 16 12 C 0.09 0.89 11.18 84.69 0.95 1.83 16 13 N -0.48 -7.51 10.35 -195.35 -2.02 -9.53 16 14 C 0.08 1.34 10.62 84.83 0.90 2.24 16 15 C 0.13 2.89 10.62 84.24 0.89 3.79 16 16 C 0.14 5.01 3.52 46.18 0.16 5.17 16 17 H 0.10 3.65 7.10 -2.39 -0.02 3.64 16 18 C -0.14 -5.33 6.69 31.99 0.21 -5.12 16 19 C 0.15 7.08 5.01 86.85 0.44 7.52 16 20 N -0.62 -29.87 2.85 -691.89 -1.97 -31.84 16 21 C -0.23 -12.43 10.27 84.03 0.86 -11.57 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 24 N -0.94 -53.72 10.09 21.65 0.22 -53.51 16 25 Si 0.98 44.29 29.55 68.60 2.03 46.32 16 26 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 29 C 0.13 5.18 6.17 86.73 0.53 5.71 16 30 H 0.08 3.11 4.22 -2.39 -0.01 3.10 16 31 H 0.08 1.98 6.24 -2.39 -0.01 1.96 16 32 H 0.08 1.94 6.71 -2.39 -0.02 1.92 16 33 H 0.23 4.49 4.21 -2.91 -0.01 4.47 16 34 H 0.15 2.15 7.78 -2.91 -0.02 2.12 16 35 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 36 H 0.20 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.17 2.15 6.76 -2.91 -0.02 2.13 16 38 H 0.21 3.48 7.06 -2.91 -0.02 3.46 16 39 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 40 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.01 0.68 5.93 -2.38 -0.01 0.66 16 42 H 0.07 3.76 5.88 -2.39 -0.01 3.75 16 43 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.03 1.28 7.71 -2.39 -0.02 1.26 16 Total: -1.00 -70.28 361.96 3.93 -66.34 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.04 Total: 16.63 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 8.40 Total: 23.47 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -7.48 Total: -131.33 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.07 Total: -21.44 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -70.28 3.93 -66.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033139921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.458 kcal (2) G-P(sol) polarization free energy of solvation -70.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds