Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99877 * 2 1 4 4 O 1.21510 * 119.99627 * 176.82437 * 3 2 1 5 5 C 1.48162 * 120.00169 * 356.81885 * 3 2 1 6 6 C 1.39230 * 119.68707 * 187.63193 * 5 3 2 7 7 C 1.38718 * 119.18864 * 179.97438 * 6 5 3 8 8 C 1.38408 * 118.55593 * 0.02562 * 7 6 5 9 9 C 1.39259 * 119.30185 * 359.97438 * 8 7 6 10 10 N 1.39817 * 119.62315 * 180.02562 * 9 8 7 11 11 C 1.35843 * 126.10592 * 179.71100 * 10 9 8 12 12 C 1.35275 * 107.61060 * 179.90218 * 11 10 9 13 13 C 1.39958 * 107.97395 * 0.36509 * 12 11 10 14 14 N 1.30814 * 108.36464 * 359.77505 * 13 12 11 15 15 N 1.31988 * 120.76182 * 359.72328 * 9 8 7 16 16 C 1.46497 * 119.99958 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.64075 * 181.69755 * 16 2 1 18 18 C 1.55164 * 110.71923 * 305.02334 * 16 2 1 19 19 C 1.55135 * 101.48113 * 82.69898 * 18 16 2 20 20 N 1.47420 * 104.72135 * 37.29557 * 19 18 16 21 21 C 1.36941 * 125.64752 * 155.82104 * 20 19 18 22 22 H 1.07998 * 119.99957 * 188.03849 * 21 20 19 23 23 C 1.38813 * 119.99969 * 8.02735 * 21 20 19 24 24 N 1.31627 * 119.99772 * 34.45014 * 23 21 20 25 25 Si 1.86798 * 120.00329 * 214.44687 * 23 21 20 26 26 H 1.48495 * 109.47188 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.46908 * 299.99992 * 25 23 21 28 28 H 1.48494 * 109.47145 * 60.00277 * 25 23 21 29 29 C 1.47022 * 108.70585 * 335.55140 * 20 19 18 30 30 H 1.08992 * 109.47908 * 276.00665 * 1 2 3 31 31 H 1.09006 * 109.47142 * 36.00863 * 1 2 3 32 32 H 1.08998 * 109.46899 * 155.99934 * 1 2 3 33 33 H 1.07998 * 120.40606 * 0.03050 * 6 5 3 34 34 H 1.07997 * 120.71774 * 180.02562 * 7 6 5 35 35 H 1.07998 * 120.34931 * 180.02562 * 8 7 6 36 36 H 1.07997 * 126.19392 * 0.02562 * 11 10 9 37 37 H 1.08006 * 126.01824 * 180.14081 * 12 11 10 38 38 H 1.07992 * 125.82054 * 179.79185 * 13 12 11 39 39 H 1.08999 * 111.00691 * 200.93537 * 18 16 2 40 40 H 1.08997 * 111.00248 * 324.75591 * 18 16 2 41 41 H 1.09004 * 110.49387 * 278.45463 * 19 18 16 42 42 H 1.09002 * 110.34011 * 156.06130 * 19 18 16 43 43 H 0.97001 * 119.99969 * 357.13522 * 24 23 21 44 44 H 1.09001 * 109.88269 * 120.70669 * 29 20 19 45 45 H 1.09005 * 109.88091 * 241.87309 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3526 1.1680 0.0583 5 6 1.3998 2.4494 -0.0712 6 6 2.1010 3.6415 -0.2315 7 6 1.3986 4.8359 -0.2974 8 6 0.0184 4.7980 -0.2003 9 6 -0.6202 3.5708 -0.0409 10 7 -2.0141 3.5246 0.0573 11 6 -2.7693 2.4057 0.2087 12 6 -4.0650 2.7907 0.2639 13 6 -4.1074 4.1837 0.1347 14 7 -2.8817 4.6237 0.0110 15 7 0.0749 2.4500 0.0125 16 6 2.1975 -1.2687 0.0006 17 1 3.2726 -1.0917 0.0307 18 6 1.7506 -2.1600 1.1894 19 6 0.4679 -2.8183 0.6168 20 7 0.7746 -3.0624 -0.8044 21 6 0.1812 -4.0076 -1.5979 22 1 0.5637 -4.1972 -2.5899 23 6 -0.9118 -4.7222 -1.1272 24 7 -1.7834 -4.1420 -0.3296 25 14 -1.1459 -6.5072 -1.6257 26 1 -2.3799 -7.0397 -0.9944 27 1 -1.2681 -6.5965 -3.1030 28 1 0.0239 -7.3040 -1.1766 29 6 1.8183 -2.1187 -1.2303 30 1 -0.3634 0.1075 1.0219 31 1 -0.3634 0.8313 -0.6042 32 1 -0.3633 -0.9388 -0.4180 33 1 3.1785 3.6363 -0.3045 34 1 1.9174 5.7749 -0.4218 35 1 -0.5573 5.7105 -0.2484 36 1 -2.4018 1.3924 0.2752 37 1 -4.9171 2.1378 0.3828 38 1 -4.9999 4.7917 0.1369 39 1 2.5075 -2.9090 1.4224 40 1 1.5198 -1.5550 2.0662 41 1 -0.3823 -2.1428 0.7108 42 1 0.2643 -3.7593 1.1280 43 1 -1.6401 -3.2282 -0.0373 44 1 2.6910 -2.6667 -1.5855 45 1 1.4351 -1.4746 -2.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033414313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = 155.091819 kcal Electronic energy + Delta-G solvation = -29957.306308 eV Core-core repulsion = 25979.412000 eV Total energy + Delta-G solvation = -3977.894307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84316 -40.76184 -39.38799 -37.64271 -34.77733 -33.90884 -33.14992 -31.97695 -30.58195 -29.77975 -29.18161 -28.21709 -26.41778 -24.99644 -24.36989 -23.97026 -22.06869 -21.16670 -20.62743 -20.22680 -19.24407 -18.25967 -17.70913 -17.48595 -16.54686 -16.15128 -16.02695 -15.83903 -15.21534 -14.92180 -14.46773 -14.30166 -13.98175 -13.77051 -13.68447 -13.65307 -13.19253 -13.05394 -12.90403 -12.66827 -12.45286 -12.06502 -12.00192 -11.78018 -11.12923 -11.09013 -10.86333 -10.76784 -10.60566 -10.45427 -10.40091 -10.26823 -10.24777 -10.00589 -9.67765 -9.41157 -9.25597 -8.62950 -8.35664 -8.27456 -6.98542 -6.23929 -3.08263 0.22905 0.55090 1.75846 1.81245 2.55326 2.69219 2.97486 3.48527 3.54118 3.57014 3.71004 3.81438 4.12597 4.44023 4.55444 4.57906 4.65042 4.75415 4.91577 5.05565 5.19205 5.20672 5.25502 5.29923 5.45566 5.55012 5.59649 5.66812 5.69371 5.74334 5.76327 5.93357 5.98565 6.04054 6.08065 6.27750 6.33431 6.38133 6.44863 6.57133 6.78643 6.83131 6.94464 6.97172 7.02597 7.47243 7.54262 7.74959 8.13991 8.46765 8.96371 9.80490 10.34509 11.17190 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.003603 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.002548 B = 7769.983647 C = 9821.278756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.569 5.569 3 C 0.565 3.435 4 O -0.539 6.539 5 C 0.121 3.879 6 C -0.126 4.126 7 C -0.057 4.057 8 C -0.147 4.147 9 C 0.365 3.635 10 N -0.328 5.328 11 C 0.082 3.918 12 C -0.262 4.262 13 C 0.067 3.933 14 N -0.290 5.290 15 N -0.470 5.470 16 C 0.122 3.878 17 H 0.105 0.895 18 C -0.144 4.144 19 C 0.135 3.865 20 N -0.602 5.602 21 C -0.348 4.348 22 H 0.069 0.931 23 C -0.022 4.022 24 N -0.910 5.910 25 Si 1.064 2.936 26 H -0.286 1.286 27 H -0.294 1.294 28 H -0.295 1.295 29 C 0.130 3.870 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.185 0.815 37 H 0.159 0.841 38 H 0.193 0.807 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.267 0.733 44 H 0.038 0.962 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 18.972 2.778 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.298 5.298 3 C 0.351 3.649 4 O -0.417 6.417 5 C -0.018 4.018 6 C -0.148 4.148 7 C -0.083 4.083 8 C -0.169 4.169 9 C 0.137 3.863 10 N -0.106 5.106 11 C -0.059 4.059 12 C -0.291 4.291 13 C -0.122 4.122 14 N -0.108 5.108 15 N -0.187 5.187 16 C 0.019 3.981 17 H 0.123 0.877 18 C -0.183 4.183 19 C 0.009 3.991 20 N -0.330 5.330 21 C -0.475 4.475 22 H 0.086 0.914 23 C -0.224 4.224 24 N -0.552 5.552 25 Si 0.895 3.105 26 H -0.212 1.212 27 H -0.221 1.221 28 H -0.222 1.222 29 C 0.003 3.997 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.202 0.798 37 H 0.177 0.823 38 H 0.210 0.790 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.747 17.734 2.816 17.972 hybrid contribution 0.647 1.296 -0.203 1.463 sum 1.394 19.030 2.613 19.259 Atomic orbital electron populations 1.22758 0.78059 1.05215 1.02214 1.47719 1.08209 1.04905 1.68988 1.17806 0.86463 0.82788 0.77823 1.90763 1.12650 1.86626 1.51666 1.20985 0.87485 0.94844 0.98493 1.22133 1.02716 0.91331 0.98584 1.21548 0.92901 0.98965 0.94889 1.21808 0.95399 0.97973 1.01749 1.17823 0.81313 0.90286 0.96924 1.45756 1.02927 1.05771 1.56184 1.23105 0.91249 0.93424 0.98156 1.21735 0.96985 0.95498 1.14835 1.24166 0.95451 0.95195 0.97393 1.77404 1.00162 1.08074 1.25185 1.67517 1.08270 1.27297 1.15571 1.22259 0.96780 0.81989 0.97055 0.87675 1.23187 1.00209 0.98460 0.96456 1.21832 0.93220 0.98310 0.85713 1.44615 1.43409 1.38839 1.06101 1.19684 1.14596 1.13584 0.99619 0.91361 1.25655 0.91598 1.04785 1.00385 1.70883 1.29967 1.15681 1.38636 0.83485 0.75789 0.75837 0.75425 1.21183 1.22080 1.22211 1.21612 0.93116 0.91103 0.93831 0.92995 0.88525 0.88778 0.82667 0.83022 0.83068 0.79759 0.82321 0.78976 0.90330 0.91499 0.94856 0.92880 0.92079 0.94454 0.95466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 7.19 59.85 0.43 1.42 16 2 N -0.57 -9.70 2.82 -172.83 -0.49 -10.19 16 3 C 0.57 9.29 7.66 -12.18 -0.09 9.19 16 4 O -0.54 -9.74 15.72 5.36 0.08 -9.66 16 5 C 0.12 1.68 6.63 -83.02 -0.55 1.13 16 6 C -0.13 -1.37 9.63 -39.04 -0.38 -1.75 16 7 C -0.06 -0.49 10.16 -39.34 -0.40 -0.89 16 8 C -0.15 -1.50 9.70 -39.14 -0.38 -1.88 16 9 C 0.37 4.66 7.55 -154.52 -1.17 3.50 16 10 N -0.33 -4.21 3.81 -12.10 -0.05 -4.26 16 11 C 0.08 0.99 11.10 -16.83 -0.19 0.81 16 12 C -0.26 -2.69 10.80 -39.99 -0.43 -3.12 16 13 C 0.07 0.64 12.02 -17.34 -0.21 0.43 16 14 N -0.29 -3.46 11.83 30.64 0.36 -3.10 16 15 N -0.47 -6.47 5.50 -8.85 -0.05 -6.51 16 16 C 0.12 2.22 3.58 -66.10 -0.24 1.98 16 17 H 0.11 1.86 6.99 -51.93 -0.36 1.50 16 18 C -0.14 -2.60 6.54 -24.46 -0.16 -2.76 16 19 C 0.13 2.98 4.33 -2.41 -0.01 2.97 16 20 N -0.60 -14.74 2.94 -169.93 -0.50 -15.24 16 21 C -0.35 -9.62 10.00 -15.06 -0.15 -9.77 16 22 H 0.07 1.91 8.02 -52.49 -0.42 1.49 16 23 C -0.02 -0.62 4.95 -17.43 -0.09 -0.70 16 24 N -0.91 -26.41 12.98 55.49 0.72 -25.69 16 25 Si 1.06 25.04 30.03 -169.99 -5.11 19.93 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 C 0.13 2.73 6.30 -3.07 -0.02 2.71 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.53 4.81 -53.12 -0.26 1.28 16 32 H 0.09 1.87 4.74 -51.93 -0.25 1.62 16 33 H 0.16 1.53 7.65 -52.49 -0.40 1.13 16 34 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 1.36 7.68 -52.49 -0.40 0.95 16 36 H 0.19 2.19 7.27 -52.49 -0.38 1.81 16 37 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.03 0.76 4.37 -51.93 -0.23 0.53 16 42 H 0.05 1.31 7.62 -51.93 -0.40 0.92 16 43 H 0.27 7.62 5.87 -40.82 -0.24 7.38 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -32.90 364.91 -9.05 -41.96 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.51 Total: 4.00 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -4.03 Total: 3.26 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.00 Total: -65.00 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.11 Total: 19.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.90 -9.05 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033414313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.049 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds