Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 119.99991 * 2 1 4 4 O 1.21609 * 119.99678 * 182.15398 * 3 2 1 5 5 C 1.47419 * 120.00259 * 2.15871 * 3 2 1 6 6 C 1.41366 * 126.40380 * 338.87328 * 5 3 2 7 7 N 1.30447 * 108.08168 * 180.24343 * 6 5 3 8 8 N 1.39943 * 108.91100 * 359.62355 * 7 6 5 9 9 C 1.39811 * 125.77317 * 180.16586 * 8 7 6 10 10 C 1.38942 * 119.69035 * 0.25834 * 9 8 7 11 11 C 1.38425 * 119.10834 * 179.97438 * 10 9 8 12 12 C 1.38791 * 118.47860 * 359.97438 * 11 10 9 13 13 C 1.38126 * 119.29705 * 0.02562 * 12 11 10 14 14 N 1.31887 * 120.84283 * 359.74458 * 13 12 11 15 15 C 1.34614 * 108.44497 * 0.38305 * 8 7 6 16 16 C 1.46501 * 120.00067 * 180.02562 * 2 1 3 17 17 H 1.08994 * 110.64239 * 178.30801 * 16 2 1 18 18 C 1.55156 * 110.72120 * 54.96819 * 16 2 1 19 19 C 1.54908 * 101.58560 * 277.14563 * 18 16 2 20 20 N 1.47430 * 104.82732 * 322.98869 * 19 18 16 21 21 C 1.36935 * 125.64578 * 204.09460 * 20 19 18 22 22 H 1.08003 * 120.00163 * 164.73569 * 21 20 19 23 23 C 1.38813 * 120.00312 * 344.73706 * 21 20 19 24 24 N 1.31620 * 119.99683 * 1.64629 * 23 21 20 25 25 Si 1.86798 * 120.00362 * 181.64724 * 23 21 20 26 26 H 1.48504 * 109.47256 * 94.98781 * 25 23 21 27 27 H 1.48502 * 109.47336 * 214.98791 * 25 23 21 28 28 H 1.48503 * 109.47114 * 334.98708 * 25 23 21 29 29 C 1.47015 * 108.70581 * 24.12993 * 20 19 18 30 30 H 1.08993 * 109.47576 * 84.91934 * 1 2 3 31 31 H 1.09005 * 109.47286 * 204.92705 * 1 2 3 32 32 H 1.09007 * 109.46927 * 324.92202 * 1 2 3 33 33 H 1.08004 * 125.96221 * 359.97438 * 6 5 3 34 34 H 1.07997 * 120.44870 * 359.97438 * 10 9 8 35 35 H 1.07993 * 120.75922 * 180.02562 * 11 10 9 36 36 H 1.08005 * 120.35421 * 180.02562 * 12 11 10 37 37 H 1.08005 * 119.58048 * 180.02562 * 13 12 11 38 38 H 1.08005 * 126.31268 * 179.77458 * 15 8 7 39 39 H 1.09001 * 111.00363 * 35.21684 * 18 16 2 40 40 H 1.09004 * 111.00337 * 159.06453 * 18 16 2 41 41 H 1.09003 * 110.36372 * 204.15636 * 19 18 16 42 42 H 1.08995 * 110.46238 * 81.86956 * 19 18 16 43 43 H 0.97003 * 120.00231 * 180.02562 * 24 23 21 44 44 H 1.09003 * 109.88395 * 239.52320 * 29 20 19 45 45 H 1.08992 * 109.88295 * 118.35639 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3543 1.1675 -0.0396 5 6 1.4026 2.4434 0.0481 6 6 0.0514 2.6467 -0.3144 7 7 -0.2296 3.9083 -0.1384 8 7 0.9082 4.5631 0.3463 9 6 0.9975 5.9227 0.6596 10 6 -0.1141 6.7406 0.4985 11 6 -0.0124 8.0848 0.8128 12 6 1.2032 8.5651 1.2797 13 6 2.2669 7.6945 1.4153 14 7 2.1383 6.4174 1.1119 15 6 1.9034 3.6633 0.4553 16 6 2.1975 -1.2687 -0.0006 17 1 3.2725 -1.0917 -0.0306 18 6 1.7506 -2.1601 -1.1893 19 6 0.4717 -2.8220 -0.6182 20 7 0.7744 -3.0624 0.8046 21 6 0.1811 -4.0075 1.5981 22 1 0.6287 -4.2774 2.5432 23 6 -0.9957 -4.6189 1.1878 24 7 -1.5238 -4.3137 0.0215 25 14 -1.8298 -5.8746 2.2909 26 1 -2.8775 -5.2032 3.1013 27 1 -2.4527 -6.9320 1.4546 28 1 -0.8223 -6.4871 3.1937 29 6 1.8182 -2.1187 1.2305 30 1 -0.3634 0.0910 -1.0235 31 1 -0.3634 -0.9320 0.4331 32 1 -0.3633 0.8411 0.5906 33 1 -0.6284 1.8903 -0.6780 34 1 -1.0450 6.3330 0.1329 35 1 -0.8596 8.7445 0.6982 36 1 1.3162 9.6086 1.5344 37 1 3.2148 8.0632 1.7786 38 1 2.9086 3.8597 0.7981 39 1 1.5191 -1.5551 -2.0659 40 1 2.5075 -2.9091 -1.4222 41 1 0.2724 -3.7646 -1.1281 42 1 -0.3812 -2.1505 -0.7163 43 1 -2.3464 -4.7406 -0.2652 44 1 2.6909 -2.6667 1.5857 45 1 1.4350 -1.4746 2.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033465950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 146.370441 kcal Electronic energy + Delta-G solvation = -28953.904160 eV Core-core repulsion = 24975.631665 eV Total energy + Delta-G solvation = -3978.272495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01053 -40.43202 -39.42048 -37.27828 -34.64098 -33.90420 -32.99718 -32.10245 -30.71963 -30.03111 -29.04687 -28.02580 -26.28101 -24.94433 -24.31353 -24.15048 -22.32896 -21.45361 -20.27555 -20.09997 -19.17200 -18.31319 -16.97067 -16.92406 -16.71284 -16.21920 -15.93901 -15.76174 -15.19419 -14.93068 -14.69522 -14.56574 -14.05623 -13.87088 -13.80152 -13.68438 -13.20212 -12.79132 -12.55940 -12.51177 -12.23844 -11.84956 -11.65855 -11.51539 -11.37510 -11.04595 -10.89251 -10.84871 -10.72966 -10.40802 -10.24149 -10.16714 -10.06918 -9.89890 -9.71022 -9.45133 -9.41780 -8.64472 -8.58161 -8.19243 -6.78200 -5.77543 -3.12816 0.20976 0.68451 1.63643 1.73314 2.04337 3.24330 3.31176 3.38292 3.44625 3.45891 3.52271 3.85428 4.09452 4.38227 4.47858 4.49255 4.56471 4.69257 4.80562 4.93846 5.15216 5.23756 5.35920 5.42561 5.45660 5.49825 5.55237 5.57395 5.64370 5.74174 5.84681 5.93119 5.96924 6.13240 6.27247 6.32514 6.39429 6.58145 6.65162 6.66906 6.75234 6.99802 7.09718 7.47549 7.48157 7.58024 7.76810 7.79696 8.25888 8.48108 9.18041 9.78203 10.47020 11.34787 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.002284 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.401606 B =12256.582678 C =12873.061369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.586 5.586 3 C 0.591 3.409 4 O -0.554 6.554 5 C -0.273 4.273 6 C 0.093 3.907 7 N -0.290 5.290 8 N -0.320 5.320 9 C 0.369 3.631 10 C -0.161 4.161 11 C -0.052 4.052 12 C -0.187 4.187 13 C 0.134 3.866 14 N -0.506 5.506 15 C 0.149 3.851 16 C 0.128 3.872 17 H 0.101 0.899 18 C -0.157 4.157 19 C 0.164 3.836 20 N -0.602 5.602 21 C -0.228 4.228 22 H 0.074 0.926 23 C -0.004 4.004 24 N -0.918 5.918 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.056 0.944 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.213 0.787 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.168 0.832 38 H 0.194 0.806 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.253 0.747 44 H 0.033 0.967 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 24.990 -0.694 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.316 5.316 3 C 0.380 3.620 4 O -0.433 6.433 5 C -0.287 4.287 6 C -0.096 4.096 7 N -0.108 5.108 8 N -0.094 5.094 9 C 0.142 3.858 10 C -0.183 4.183 11 C -0.078 4.078 12 C -0.207 4.207 13 C -0.024 4.024 14 N -0.219 5.219 15 C 0.003 3.997 16 C 0.025 3.975 17 H 0.119 0.881 18 C -0.197 4.197 19 C 0.039 3.961 20 N -0.329 5.329 21 C -0.356 4.356 22 H 0.092 0.908 23 C -0.201 4.201 24 N -0.565 5.565 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.229 0.771 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.185 0.815 38 H 0.211 0.789 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.286 25.230 -0.681 25.452 hybrid contribution -0.702 -0.765 0.543 1.172 sum 2.585 24.464 -0.138 24.601 Atomic orbital electron populations 1.22601 0.79492 1.05633 1.01155 1.47547 1.07193 1.05171 1.71730 1.17159 0.86315 0.82366 0.76187 1.90744 1.13310 1.87335 1.51953 1.20431 0.95616 0.94946 1.17731 1.25104 0.95296 0.93487 0.95736 1.77296 1.05223 1.07339 1.20904 1.45443 1.09504 1.05218 1.49275 1.17734 0.90975 0.81535 0.95523 1.21675 0.99451 0.93901 1.03264 1.21565 0.98120 0.94388 0.93765 1.22200 0.94062 1.01964 1.02507 1.22568 0.99294 0.86358 0.94156 1.66887 1.24152 1.16782 1.14054 1.23114 0.94908 0.87186 0.94519 1.22131 0.96507 0.81887 0.96962 0.88074 1.23369 1.01434 0.98449 0.96424 1.21668 0.90932 0.99164 0.84315 1.44492 1.43661 1.37486 1.07287 1.19009 1.02640 1.13110 1.00883 0.90789 1.24883 0.97028 1.00645 0.97507 1.69919 1.21363 1.45754 1.19481 0.86130 0.79535 0.80613 0.79661 1.21603 1.21747 1.20628 1.21667 0.92903 0.91359 0.94172 0.92538 0.86960 0.91496 0.77064 0.83125 0.83699 0.83914 0.81463 0.78873 0.91846 0.91036 0.91121 0.94582 0.93689 0.94945 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.83 7.02 59.84 0.42 1.25 16 2 N -0.59 -9.97 2.82 -173.10 -0.49 -10.46 16 3 C 0.59 10.14 7.65 -12.52 -0.10 10.04 16 4 O -0.55 -10.94 16.33 5.27 0.09 -10.86 16 5 C -0.27 -4.01 5.77 -105.05 -0.61 -4.62 16 6 C 0.09 1.20 9.71 -16.95 -0.16 1.03 16 7 N -0.29 -3.84 11.74 30.88 0.36 -3.48 16 8 N -0.32 -4.20 3.76 -11.74 -0.04 -4.25 16 9 C 0.37 4.22 7.54 -154.37 -1.16 3.06 16 10 C -0.16 -1.44 9.69 -39.25 -0.38 -1.82 16 11 C -0.05 -0.31 10.17 -39.31 -0.40 -0.71 16 12 C -0.19 -0.98 10.11 -39.42 -0.40 -1.37 16 13 C 0.13 0.93 11.18 -17.57 -0.20 0.74 16 14 N -0.51 -5.35 9.82 -12.29 -0.12 -5.47 16 15 C 0.15 2.04 10.93 -16.42 -0.18 1.86 16 16 C 0.13 2.38 3.58 -66.09 -0.24 2.14 16 17 H 0.10 1.88 6.99 -51.93 -0.36 1.52 16 18 C -0.16 -2.93 6.53 -24.58 -0.16 -3.09 16 19 C 0.16 3.71 4.52 -2.53 -0.01 3.70 16 20 N -0.60 -14.72 2.97 -170.07 -0.51 -15.22 16 21 C -0.23 -6.16 10.23 -15.06 -0.15 -6.31 16 22 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 23 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 24 N -0.92 -25.67 10.56 55.49 0.59 -25.09 16 25 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 C 0.13 2.63 6.29 -3.06 -0.02 2.61 16 30 H 0.06 0.76 7.38 -51.93 -0.38 0.38 16 31 H 0.11 2.16 4.82 -51.93 -0.25 1.91 16 32 H 0.07 0.91 5.23 -51.93 -0.27 0.64 16 33 H 0.21 2.28 5.10 -52.48 -0.27 2.01 16 34 H 0.15 1.31 7.67 -52.49 -0.40 0.91 16 35 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 37 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.19 2.46 8.03 -52.48 -0.42 2.04 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.07 1.83 6.92 -51.93 -0.36 1.47 16 42 H 0.04 0.84 5.47 -51.93 -0.28 0.55 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -32.97 365.67 -8.98 -41.95 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.50 Total: 2.48 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -3.84 Total: 8.31 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.21 Total: -63.96 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.97 -8.98 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033465950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.321 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds