Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 120.00149 * 2 1 4 4 O 1.21628 * 120.00200 * 184.71867 * 3 2 1 5 5 C 1.47152 * 119.99928 * 4.72493 * 3 2 1 6 6 C 1.37076 * 127.20953 * 353.53672 * 5 3 2 7 7 N 1.33315 * 106.37007 * 180.02562 * 6 5 3 8 8 N 1.28498 * 109.49966 * 359.97438 * 7 6 5 9 9 N 1.28714 * 110.67069 * 359.71708 * 8 7 6 10 10 C 1.40083 * 126.05908 * 180.28525 * 9 8 7 11 11 C 1.38870 * 120.07235 * 135.11853 * 10 9 8 12 12 C 1.38104 * 119.92985 * 179.72054 * 11 10 9 13 13 C 1.38283 * 120.07133 * 0.54594 * 12 11 10 14 14 C 1.38293 * 120.13917 * 359.72476 * 13 12 11 15 15 C 1.38111 * 120.06626 * 0.02562 * 14 13 12 16 16 C 1.46499 * 119.99857 * 180.02562 * 2 1 3 17 17 H 1.09005 * 110.64112 * 189.88704 * 16 2 1 18 18 C 1.55159 * 110.72184 * 66.74466 * 16 2 1 19 19 C 1.54912 * 101.57757 * 277.13799 * 18 16 2 20 20 N 1.47420 * 104.93166 * 322.93369 * 19 18 16 21 21 C 1.36932 * 125.65063 * 204.16054 * 20 19 18 22 22 H 1.08004 * 120.00341 * 180.02562 * 21 20 19 23 23 C 1.38816 * 120.00014 * 0.02562 * 21 20 19 24 24 N 1.31616 * 119.99850 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99877 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47111 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47047 * 120.00110 * 25 23 21 28 28 H 1.48499 * 109.46946 * 239.99653 * 25 23 21 29 29 C 1.47294 * 108.55594 * 24.15724 * 20 19 18 30 30 H 1.08997 * 109.47154 * 181.86717 * 1 2 3 31 31 H 1.08999 * 109.46869 * 301.86449 * 1 2 3 32 32 H 1.08997 * 109.46953 * 61.86123 * 1 2 3 33 33 H 1.07993 * 126.81699 * 359.97438 * 6 5 3 34 34 H 1.08000 * 120.03089 * 359.97438 * 11 10 9 35 35 H 1.08002 * 119.96623 * 180.29398 * 12 11 10 36 36 H 1.08000 * 119.93213 * 179.70184 * 13 12 11 37 37 H 1.07995 * 119.96484 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.03398 * 180.02562 * 15 14 13 39 39 H 1.08997 * 111.00387 * 159.06138 * 18 16 2 40 40 H 1.09002 * 111.03715 * 35.22319 * 18 16 2 41 41 H 1.09001 * 110.36835 * 81.82754 * 19 18 16 42 42 H 1.09000 * 110.36407 * 204.03873 * 19 18 16 43 43 H 0.97002 * 119.99628 * 180.02562 * 24 23 21 44 44 H 1.09007 * 109.85567 * 239.50131 * 29 20 19 45 45 H 1.08998 * 109.87330 * 118.35865 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1690 -0.0866 5 6 1.4069 2.4394 0.1050 6 6 0.0480 2.6178 0.0863 7 7 -0.1606 3.9289 0.2084 8 7 0.9683 4.5362 0.2980 9 7 1.9417 3.6956 0.2483 10 6 3.3053 4.0077 0.3230 11 6 4.1482 3.2549 1.1300 12 6 5.4931 3.5616 1.1970 13 6 5.9986 4.6239 0.4703 14 6 5.1608 5.3790 -0.3300 15 6 3.8158 5.0742 -0.4052 16 6 2.1975 -1.2687 -0.0006 17 1 3.2599 -1.0992 0.1747 18 6 1.9757 -2.0301 -1.3342 19 6 0.6221 -2.7350 -1.0685 20 7 0.6691 -3.1242 0.3527 21 6 -0.0467 -4.1412 0.9257 22 1 0.0581 -4.3477 1.9807 23 6 -0.9071 -4.9068 0.1508 24 7 -1.0344 -4.6555 -1.1349 25 14 -1.8842 -6.2936 0.9328 26 1 -1.5634 -6.3700 2.3807 27 1 -3.3362 -6.0348 0.7599 28 1 -1.5293 -7.5789 0.2791 29 6 1.6144 -2.2362 1.0508 30 1 -0.3633 -1.0271 0.0335 31 1 -0.3633 0.5425 0.8728 32 1 -0.3633 0.4846 -0.9062 33 1 -0.7044 1.8491 -0.0093 34 1 3.7532 2.4280 1.7015 35 1 6.1501 2.9736 1.8208 36 1 7.0498 4.8647 0.5281 37 1 5.5586 6.2078 -0.8966 38 1 3.1621 5.6640 -1.0306 39 1 2.7686 -2.7582 -1.5049 40 1 1.8975 -1.3372 -2.1720 41 1 -0.2049 -2.0477 -1.2463 42 1 0.5236 -3.6176 -1.7005 43 1 -1.6360 -5.1903 -1.6763 44 1 2.4156 -2.8257 1.4969 45 1 1.0917 -1.6727 1.8236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033474607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = 164.843108 kcal Electronic energy + Delta-G solvation = -29962.641395 eV Core-core repulsion = 25985.169935 eV Total energy + Delta-G solvation = -3977.471460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.65425 -39.98762 -39.49712 -37.58066 -35.16815 -34.43671 -32.62118 -31.55537 -31.01753 -30.16802 -29.29534 -28.04193 -26.83974 -25.02514 -24.30474 -23.68796 -22.92688 -22.08414 -20.57359 -20.24427 -19.35627 -18.17565 -17.39686 -17.03162 -16.88477 -16.60907 -16.19884 -15.37021 -15.26953 -14.86999 -14.71309 -14.49803 -14.13885 -13.85735 -13.81220 -13.27053 -13.07953 -12.81102 -12.52980 -12.42902 -12.10649 -11.96577 -11.74314 -11.64504 -11.54476 -11.40067 -11.16008 -10.98236 -10.94019 -10.84035 -10.45645 -10.18151 -9.98715 -9.85403 -9.66636 -9.62990 -9.27520 -8.98366 -8.78400 -8.48519 -6.97869 -5.76423 -3.19442 0.32688 1.02942 1.19829 1.84974 2.17738 2.96691 2.99786 3.33564 3.35739 3.40032 3.41946 4.16903 4.31270 4.39762 4.51391 4.54210 4.73795 4.74997 4.95491 5.00207 5.18522 5.24636 5.27472 5.30423 5.35913 5.39922 5.54289 5.60563 5.63352 5.72651 5.76959 5.93779 5.99462 6.02417 6.12647 6.16915 6.22332 6.26780 6.43907 6.46772 6.56254 6.64449 6.80774 7.31183 7.38764 7.52148 7.74127 7.98036 8.17234 8.23487 9.09932 9.70062 10.33251 11.26942 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.002788 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.063486 B =10038.862356 C =10780.621825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.570 5.570 3 C 0.585 3.415 4 O -0.535 6.535 5 C -0.059 4.059 6 C -0.012 4.012 7 N -0.269 5.269 8 N -0.057 5.057 9 N -0.212 5.212 10 C 0.106 3.894 11 C -0.055 4.055 12 C -0.109 4.109 13 C -0.099 4.099 14 C -0.117 4.117 15 C -0.090 4.090 16 C 0.129 3.871 17 H 0.102 0.898 18 C -0.154 4.154 19 C 0.143 3.857 20 N -0.603 5.603 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.126 3.874 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.221 0.779 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.021 0.979 42 H 0.108 0.892 43 H 0.253 0.747 44 H 0.038 0.962 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.574 16.934 1.567 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.301 5.301 3 C 0.370 3.630 4 O -0.413 6.413 5 C -0.191 4.191 6 C -0.170 4.170 7 N -0.132 5.132 8 N -0.036 5.036 9 N -0.003 5.003 10 C 0.016 3.984 11 C -0.075 4.075 12 C -0.128 4.128 13 C -0.118 4.118 14 C -0.135 4.135 15 C -0.110 4.110 16 C 0.026 3.974 17 H 0.120 0.880 18 C -0.194 4.194 19 C 0.019 3.981 20 N -0.330 5.330 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.000 4.000 30 H 0.143 0.857 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.237 0.763 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.126 0.874 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.606 18.214 1.612 21.139 hybrid contribution -0.410 -1.777 0.198 1.835 sum 10.196 16.437 1.810 19.427 Atomic orbital electron populations 1.22809 0.79024 1.07784 1.00502 1.47510 1.07546 1.04761 1.70246 1.16685 0.86374 0.81908 0.77989 1.90825 1.12737 1.86697 1.51056 1.22115 0.94206 0.88212 1.14546 1.25104 0.94305 0.95271 1.02339 1.74942 1.15948 1.05830 1.16517 1.78348 0.89952 1.17818 1.17483 1.44717 1.06639 1.04374 1.44590 1.17516 0.78160 1.00215 1.02501 1.21038 0.93624 0.97087 0.95739 1.21029 0.94158 0.97542 1.00040 1.21365 1.00224 0.94720 0.95474 1.21012 0.92285 1.00501 0.99712 1.21003 0.96283 0.95734 0.97934 1.22274 0.96087 0.81128 0.97920 0.87996 1.23396 1.02007 0.98890 0.95108 1.22118 0.89889 0.99179 0.86912 1.44627 1.48170 1.35327 1.04860 1.19096 1.16840 1.05975 0.93361 0.90361 1.24782 0.99992 0.99761 0.95853 1.69791 1.40646 1.41760 1.04658 0.86005 0.79583 0.81727 0.78191 1.20534 1.21695 1.21734 1.21674 0.93469 0.91314 0.93549 0.85663 0.91596 0.91647 0.76340 0.84939 0.84692 0.85105 0.84763 0.84887 0.90794 0.91922 0.96128 0.87394 0.93659 0.94465 0.95167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 7.07 59.85 0.42 1.00 16 2 N -0.57 -8.74 2.84 -173.21 -0.49 -9.23 16 3 C 0.59 9.08 7.28 -12.64 -0.09 8.99 16 4 O -0.54 -9.06 12.70 5.25 0.07 -9.00 16 5 C -0.06 -0.87 6.72 -82.23 -0.55 -1.42 16 6 C -0.01 -0.16 9.99 -17.33 -0.17 -0.34 16 7 N -0.27 -4.07 12.34 30.49 0.38 -3.70 16 8 N -0.06 -0.87 12.95 60.35 0.78 -0.09 16 9 N -0.21 -3.10 3.48 -7.21 -0.03 -3.12 16 10 C 0.11 1.38 5.87 -83.62 -0.49 0.89 16 11 C -0.05 -0.67 7.45 -39.40 -0.29 -0.96 16 12 C -0.11 -1.04 10.04 -39.61 -0.40 -1.44 16 13 C -0.10 -0.79 10.04 -39.54 -0.40 -1.19 16 14 C -0.12 -0.97 10.04 -39.61 -0.40 -1.37 16 15 C -0.09 -0.97 9.82 -39.40 -0.39 -1.36 16 16 C 0.13 2.15 3.53 -66.10 -0.23 1.92 16 17 H 0.10 1.67 7.09 -51.93 -0.37 1.30 16 18 C -0.15 -2.75 6.69 -24.58 -0.16 -2.92 16 19 C 0.14 3.11 5.00 -2.53 -0.01 3.10 16 20 N -0.60 -13.84 2.89 -169.86 -0.49 -14.33 16 21 C -0.22 -5.77 10.28 -15.06 -0.15 -5.93 16 22 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -25.02 10.09 55.49 0.56 -24.46 16 25 Si 0.91 20.97 29.55 -169.99 -5.02 15.95 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 29 C 0.13 2.40 6.21 -2.92 -0.02 2.38 16 30 H 0.13 2.18 4.12 -51.93 -0.21 1.96 16 31 H 0.07 0.80 6.28 -51.93 -0.33 0.48 16 32 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 33 H 0.22 2.42 4.27 -52.49 -0.22 2.20 16 34 H 0.13 1.74 6.81 -52.49 -0.36 1.38 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.46 5.87 -51.93 -0.30 0.16 16 42 H 0.11 2.74 5.86 -51.93 -0.30 2.43 16 43 H 0.25 6.72 8.31 -40.82 -0.34 6.39 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.03 0.57 7.73 -51.93 -0.40 0.17 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -30.12 357.27 -7.66 -37.78 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.36 Total: 3.76 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.44 Total: 1.06 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.71 Total: -54.93 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.12 -7.66 -37.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033474607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.622 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds