Wall clock time and date at job start Sat Apr 11 2020 06:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 120.00149 * 2 1 4 4 O 1.21628 * 120.00200 * 184.71867 * 3 2 1 5 5 C 1.47152 * 119.99928 * 4.72493 * 3 2 1 6 6 C 1.37076 * 127.20953 * 353.53672 * 5 3 2 7 7 N 1.33315 * 106.37007 * 180.02562 * 6 5 3 8 8 N 1.28498 * 109.49966 * 359.97438 * 7 6 5 9 9 N 1.28714 * 110.67069 * 359.71708 * 8 7 6 10 10 C 1.40083 * 126.05908 * 180.28525 * 9 8 7 11 11 C 1.38870 * 120.07235 * 135.11853 * 10 9 8 12 12 C 1.38104 * 119.92985 * 179.72054 * 11 10 9 13 13 C 1.38283 * 120.07133 * 0.54594 * 12 11 10 14 14 C 1.38293 * 120.13917 * 359.72476 * 13 12 11 15 15 C 1.38111 * 120.06626 * 0.02562 * 14 13 12 16 16 C 1.46499 * 119.99857 * 180.02562 * 2 1 3 17 17 H 1.09005 * 110.64112 * 189.88704 * 16 2 1 18 18 C 1.55159 * 110.72184 * 66.74466 * 16 2 1 19 19 C 1.54912 * 101.57757 * 277.13799 * 18 16 2 20 20 N 1.47420 * 104.93166 * 322.93369 * 19 18 16 21 21 C 1.36932 * 125.65063 * 204.16054 * 20 19 18 22 22 H 1.08004 * 120.00341 * 180.02562 * 21 20 19 23 23 C 1.38816 * 120.00014 * 0.02562 * 21 20 19 24 24 N 1.31616 * 119.99850 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99877 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47111 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47047 * 120.00110 * 25 23 21 28 28 H 1.48499 * 109.46946 * 239.99653 * 25 23 21 29 29 C 1.47294 * 108.55594 * 24.15724 * 20 19 18 30 30 H 1.08997 * 109.47154 * 181.86717 * 1 2 3 31 31 H 1.08999 * 109.46869 * 301.86449 * 1 2 3 32 32 H 1.08997 * 109.46953 * 61.86123 * 1 2 3 33 33 H 1.07993 * 126.81699 * 359.97438 * 6 5 3 34 34 H 1.08000 * 120.03089 * 359.97438 * 11 10 9 35 35 H 1.08002 * 119.96623 * 180.29398 * 12 11 10 36 36 H 1.08000 * 119.93213 * 179.70184 * 13 12 11 37 37 H 1.07995 * 119.96484 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.03398 * 180.02562 * 15 14 13 39 39 H 1.08997 * 111.00387 * 159.06138 * 18 16 2 40 40 H 1.09002 * 111.03715 * 35.22319 * 18 16 2 41 41 H 1.09001 * 110.36835 * 81.82754 * 19 18 16 42 42 H 1.09000 * 110.36407 * 204.03873 * 19 18 16 43 43 H 0.97002 * 119.99628 * 180.02562 * 24 23 21 44 44 H 1.09007 * 109.85567 * 239.50131 * 29 20 19 45 45 H 1.08998 * 109.87330 * 118.35865 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1690 -0.0866 5 6 1.4069 2.4394 0.1050 6 6 0.0480 2.6178 0.0863 7 7 -0.1606 3.9289 0.2084 8 7 0.9683 4.5362 0.2980 9 7 1.9417 3.6956 0.2483 10 6 3.3053 4.0077 0.3230 11 6 4.1482 3.2549 1.1300 12 6 5.4931 3.5616 1.1970 13 6 5.9986 4.6239 0.4703 14 6 5.1608 5.3790 -0.3300 15 6 3.8158 5.0742 -0.4052 16 6 2.1975 -1.2687 -0.0006 17 1 3.2599 -1.0992 0.1747 18 6 1.9757 -2.0301 -1.3342 19 6 0.6221 -2.7350 -1.0685 20 7 0.6691 -3.1242 0.3527 21 6 -0.0467 -4.1412 0.9257 22 1 0.0581 -4.3477 1.9807 23 6 -0.9071 -4.9068 0.1508 24 7 -1.0344 -4.6555 -1.1349 25 14 -1.8842 -6.2936 0.9328 26 1 -1.5634 -6.3700 2.3807 27 1 -3.3362 -6.0348 0.7599 28 1 -1.5293 -7.5789 0.2791 29 6 1.6144 -2.2362 1.0508 30 1 -0.3633 -1.0271 0.0335 31 1 -0.3633 0.5425 0.8728 32 1 -0.3633 0.4846 -0.9062 33 1 -0.7044 1.8491 -0.0093 34 1 3.7532 2.4280 1.7015 35 1 6.1501 2.9736 1.8208 36 1 7.0498 4.8647 0.5281 37 1 5.5586 6.2078 -0.8966 38 1 3.1621 5.6640 -1.0306 39 1 2.7686 -2.7582 -1.5049 40 1 1.8975 -1.3372 -2.1720 41 1 -0.2049 -2.0477 -1.2463 42 1 0.5236 -3.6176 -1.7005 43 1 -1.6360 -5.1903 -1.6763 44 1 2.4156 -2.8257 1.4969 45 1 1.0917 -1.6727 1.8236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033474607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:57 Heat of formation + Delta-G solvation = 147.714542 kcal Electronic energy + Delta-G solvation = -29963.384145 eV Core-core repulsion = 25985.169935 eV Total energy + Delta-G solvation = -3978.214210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.74246 -41.28901 -40.28684 -39.03263 -36.41631 -35.58891 -34.26856 -32.69620 -31.98955 -31.04037 -30.93011 -29.50096 -28.17074 -26.56340 -25.55076 -24.70762 -23.97372 -23.04378 -22.01033 -21.63899 -20.60583 -19.23090 -18.90699 -18.55579 -17.94930 -17.55579 -17.38599 -16.69771 -16.44074 -16.26533 -15.82000 -15.65190 -15.57984 -15.04178 -14.67704 -14.36147 -14.31224 -14.05837 -13.88639 -13.72353 -13.55251 -13.36851 -12.93971 -12.85918 -12.81633 -12.77029 -12.50424 -12.40123 -12.38727 -11.96757 -11.90929 -11.77880 -11.76690 -11.43193 -11.16786 -10.76265 -10.67731 -10.05075 -9.81858 -9.77757 -8.85501 -7.73557 -5.17204 -0.65768 0.25247 0.31886 0.81745 1.07027 1.50430 1.52215 1.60878 1.78133 1.81825 2.52240 2.60812 3.03002 3.27813 3.37936 3.61740 3.68132 3.74482 3.78684 3.84293 3.96026 4.05623 4.13712 4.15312 4.28155 4.33167 4.40459 4.48672 4.50909 4.64999 4.65729 4.73012 4.83336 4.92242 4.94080 5.02890 5.10488 5.20378 5.22918 5.41038 5.42371 5.44013 5.53740 5.65887 5.85808 5.86309 6.14105 6.34919 6.76159 7.05942 7.14798 7.80273 8.43301 9.27472 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.002788 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.063486 B =10038.862356 C =10780.621825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.570 5.570 3 C 0.591 3.409 4 O -0.549 6.549 5 C -0.074 4.074 6 C -0.002 4.002 7 N -0.288 5.288 8 N -0.069 5.069 9 N -0.206 5.206 10 C 0.069 3.931 11 C -0.073 4.073 12 C -0.113 4.113 13 C -0.088 4.088 14 C -0.110 4.110 15 C -0.100 4.100 16 C 0.144 3.856 17 H 0.112 0.888 18 C -0.141 4.141 19 C 0.150 3.850 20 N -0.618 5.618 21 C -0.231 4.231 22 H 0.080 0.920 23 C -0.060 4.060 24 N -0.944 5.944 25 Si 0.973 3.027 26 H -0.270 1.270 27 H -0.294 1.294 28 H -0.296 1.296 29 C 0.128 3.872 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.242 0.758 34 H 0.115 0.885 35 H 0.155 0.845 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.015 0.985 42 H 0.071 0.929 43 H 0.246 0.754 44 H 0.041 0.959 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.341 18.442 1.959 22.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.301 5.301 3 C 0.377 3.623 4 O -0.428 6.428 5 C -0.206 4.206 6 C -0.160 4.160 7 N -0.150 5.150 8 N -0.048 5.048 9 N 0.003 4.997 10 C -0.020 4.020 11 C -0.094 4.094 12 C -0.132 4.132 13 C -0.106 4.106 14 C -0.128 4.128 15 C -0.120 4.120 16 C 0.040 3.960 17 H 0.129 0.871 18 C -0.180 4.180 19 C 0.025 3.975 20 N -0.345 5.345 21 C -0.360 4.360 22 H 0.097 0.903 23 C -0.253 4.253 24 N -0.593 5.593 25 Si 0.802 3.198 26 H -0.194 1.194 27 H -0.221 1.221 28 H -0.223 1.223 29 C 0.002 3.998 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.257 0.743 34 H 0.133 0.867 35 H 0.173 0.827 36 H 0.186 0.814 37 H 0.185 0.815 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.385 19.757 2.024 23.406 hybrid contribution -0.836 -2.161 0.109 2.320 sum 11.549 17.596 2.134 21.155 Atomic orbital electron populations 1.22820 0.78269 1.06292 1.02489 1.47450 1.07936 1.04275 1.70425 1.16671 0.86136 0.82011 0.77456 1.90813 1.13391 1.86906 1.51646 1.22072 0.94558 0.88126 1.15846 1.25442 0.94344 0.95180 1.01079 1.74926 1.16188 1.06519 1.17410 1.78302 0.90244 1.18216 1.18018 1.44901 1.07259 1.04152 1.43409 1.17924 0.77586 1.01960 1.04491 1.21048 0.94882 0.97110 0.96338 1.21364 0.93226 0.98245 1.00347 1.21821 1.01945 0.93216 0.93654 1.21452 0.91121 1.00968 0.99240 1.21217 0.97647 0.95222 0.97934 1.22026 0.96492 0.81197 0.96244 0.87060 1.23236 0.99678 0.98919 0.96186 1.21879 0.91920 0.97779 0.85881 1.44790 1.48521 1.35430 1.05736 1.19382 1.16674 1.06366 0.93555 0.90255 1.25472 1.01394 1.02001 0.96390 1.70022 1.41210 1.42529 1.05571 0.85091 0.77914 0.78922 0.77857 1.19438 1.22091 1.22340 1.21743 0.92770 0.91233 0.94013 0.88669 0.89591 0.89714 0.74276 0.86733 0.82747 0.81416 0.81456 0.84763 0.90516 0.90680 0.96694 0.91132 0.94404 0.94105 0.94764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.16 7.07 127.77 0.90 2.06 16 2 N -0.57 -16.84 2.84 -820.15 -2.33 -19.17 16 3 C 0.59 17.80 7.28 86.58 0.63 18.43 16 4 O -0.55 -18.11 12.70 -4.12 -0.05 -18.16 16 5 C -0.07 -2.12 6.72 40.36 0.27 -1.85 16 6 C 0.00 -0.04 9.99 84.19 0.84 0.80 16 7 N -0.29 -8.58 12.34 -57.46 -0.71 -9.29 16 8 N -0.07 -2.09 12.95 37.02 0.48 -1.61 16 9 N -0.21 -5.96 3.48 -176.71 -0.62 -6.58 16 10 C 0.07 1.78 5.87 38.12 0.22 2.01 16 11 C -0.07 -1.75 7.45 22.39 0.17 -1.58 16 12 C -0.11 -1.92 10.04 22.25 0.22 -1.70 16 13 C -0.09 -1.09 10.04 22.29 0.22 -0.87 16 14 C -0.11 -1.49 10.04 22.25 0.22 -1.26 16 15 C -0.10 -2.03 9.82 22.39 0.22 -1.81 16 16 C 0.14 4.65 3.53 46.18 0.16 4.81 16 17 H 0.11 3.47 7.09 -2.38 -0.02 3.45 16 18 C -0.14 -4.91 6.69 31.99 0.21 -4.70 16 19 C 0.15 6.60 5.00 86.86 0.43 7.03 16 20 N -0.62 -28.50 2.89 -691.30 -1.99 -30.49 16 21 C -0.23 -11.93 10.28 84.04 0.86 -11.06 16 22 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 23 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 24 N -0.94 -52.52 10.09 21.65 0.22 -52.31 16 25 Si 0.97 43.52 29.55 68.60 2.03 45.55 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 29 C 0.13 4.77 6.21 86.68 0.54 5.31 16 30 H 0.09 3.28 4.12 -2.39 -0.01 3.27 16 31 H 0.09 1.96 6.28 -2.39 -0.01 1.95 16 32 H 0.08 1.95 6.77 -2.39 -0.02 1.94 16 33 H 0.24 4.91 4.27 -2.91 -0.01 4.89 16 34 H 0.11 3.06 6.81 -2.91 -0.02 3.04 16 35 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.02 0.68 5.87 -2.39 -0.01 0.67 16 42 H 0.07 3.68 5.86 -2.39 -0.01 3.67 16 43 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 44 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.03 1.26 7.73 -2.39 -0.02 1.24 16 Total: -1.00 -66.16 357.27 4.67 -61.49 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.04 Total: 17.66 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 6.61 Total: 12.92 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -4.95 Total: -119.45 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -66.16 4.67 -61.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033474607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.206 kcal (2) G-P(sol) polarization free energy of solvation -66.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds