Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34779 * 120.00602 * 2 1 4 4 O 1.21613 * 120.00392 * 185.82564 * 3 2 1 5 5 C 1.47293 * 119.99372 * 5.81893 * 3 2 1 6 6 C 1.37960 * 126.80840 * 6.39179 * 5 3 2 7 7 N 1.34164 * 107.88532 * 179.82887 * 6 5 3 8 8 H 0.96999 * 125.16509 * 180.15714 * 7 6 5 9 9 N 1.39772 * 109.67245 * 0.44434 * 7 6 5 10 10 C 1.31362 * 109.08023 * 359.71611 * 9 7 6 11 11 C 1.48298 * 126.51150 * 180.02562 * 10 9 7 12 12 C 1.39802 * 120.53862 * 324.72851 * 11 10 9 13 13 C 1.38413 * 118.30598 * 179.73439 * 12 11 10 14 14 C 1.38328 * 119.28421 * 0.56182 * 13 12 11 15 15 N 1.31887 * 121.03882 * 359.69684 * 14 13 12 16 16 C 1.31750 * 121.85580 * 0.02562 * 15 14 13 17 17 C 1.46505 * 119.99984 * 180.02562 * 2 1 3 18 18 H 1.09001 * 110.78200 * 181.78015 * 17 2 1 19 19 C 1.55149 * 110.71979 * 305.02481 * 17 2 1 20 20 C 1.55130 * 101.49019 * 82.69561 * 19 17 2 21 21 N 1.47426 * 104.71779 * 37.29338 * 20 19 17 22 22 C 1.36936 * 125.64349 * 155.82586 * 21 20 19 23 23 H 1.07999 * 119.99805 * 199.34792 * 22 21 20 24 24 C 1.38808 * 120.00459 * 19.34302 * 22 21 20 25 25 N 1.31623 * 119.99775 * 29.59538 * 24 22 21 26 26 Si 1.86801 * 120.00172 * 209.59986 * 24 22 21 27 27 H 1.48502 * 109.47293 * 180.02562 * 26 24 22 28 28 H 1.48497 * 109.46941 * 299.99789 * 26 24 22 29 29 H 1.48504 * 109.47350 * 59.99760 * 26 24 22 30 30 C 1.47020 * 108.70662 * 335.55558 * 21 20 19 31 31 H 1.08999 * 109.46951 * 275.29365 * 1 2 3 32 32 H 1.09002 * 109.47276 * 35.29249 * 1 2 3 33 33 H 1.09004 * 109.47515 * 155.29740 * 1 2 3 34 34 H 1.07996 * 126.06048 * 359.97438 * 6 5 3 35 35 H 1.07991 * 120.85028 * 359.97438 * 12 11 10 36 36 H 1.07994 * 120.35537 * 180.26303 * 13 12 11 37 37 H 1.07997 * 119.47681 * 179.72639 * 14 13 12 38 38 H 1.08002 * 119.70133 * 179.97438 * 16 15 14 39 39 H 1.09007 * 111.00520 * 200.93789 * 19 17 2 40 40 H 1.08999 * 111.00760 * 324.74433 * 19 17 2 41 41 H 1.09007 * 110.49083 * 278.45644 * 20 19 17 42 42 H 1.08998 * 110.34445 * 156.05863 * 20 19 17 43 43 H 0.96998 * 119.99875 * 6.31407 * 25 24 22 44 44 H 1.08998 * 109.88055 * 120.70396 * 30 21 20 45 45 H 1.09002 * 109.88336 * 241.87296 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3504 1.1698 -0.1069 5 6 1.4082 2.4395 0.1293 6 6 0.0607 2.5969 0.3799 7 7 -0.1991 3.9124 0.4250 8 1 -1.0711 4.3044 0.5886 9 7 0.9765 4.6323 0.1939 10 6 1.9673 3.7894 0.0112 11 6 3.3828 4.1374 -0.2622 12 6 3.7022 5.2542 -1.0401 13 6 5.0384 5.5394 -1.2614 14 6 6.0056 4.7113 -0.7207 15 7 5.6736 3.6613 0.0049 16 6 4.4157 3.3531 0.2471 17 6 2.1974 -1.2688 -0.0006 18 1 3.2730 -1.0944 0.0312 19 6 1.7506 -2.1611 1.1874 20 6 0.4679 -2.8189 0.6144 21 7 0.7744 -3.0617 -0.8071 22 6 0.1809 -4.0062 -1.6014 23 1 0.6641 -4.3263 -2.5127 24 6 -1.0417 -4.5522 -1.2353 25 7 -1.8959 -3.8404 -0.5310 26 14 -1.4746 -6.2972 -1.7422 27 1 -2.8261 -6.6403 -1.2313 28 1 -1.4654 -6.3991 -3.2236 29 1 -0.4766 -7.2395 -1.1750 30 6 1.8182 -2.1177 -1.2323 31 1 -0.3633 0.0948 1.0233 32 1 -0.3634 0.8388 -0.5937 33 1 -0.3634 -0.9336 -0.4295 34 1 -0.6574 1.8022 0.5179 35 1 2.9263 5.8807 -1.4545 36 1 5.3227 6.3964 -1.8539 37 1 7.0491 4.9284 -0.8952 38 1 4.1833 2.4846 0.8456 39 1 2.5076 -2.9103 1.4197 40 1 1.5199 -1.5569 2.0648 41 1 -0.3824 -2.1434 0.7091 42 1 0.2643 -3.7603 1.1247 43 1 -1.7120 -2.9061 -0.3459 44 1 2.6908 -2.6654 -1.5880 45 1 1.4349 -1.4728 -2.0231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033515005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = 136.513628 kcal Electronic energy + Delta-G solvation = -29806.471955 eV Core-core repulsion = 25827.772037 eV Total energy + Delta-G solvation = -3978.699918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55221 -39.86540 -39.62657 -37.53925 -34.79118 -33.52182 -32.56795 -32.00616 -30.59977 -30.12225 -29.06512 -28.15862 -26.55856 -24.39749 -24.26877 -23.63518 -22.80574 -21.14699 -20.32106 -20.15920 -19.33149 -17.92252 -17.51681 -17.06612 -16.74757 -16.20233 -15.89507 -15.66289 -15.34105 -14.68624 -14.60572 -14.26140 -14.07020 -13.78676 -13.75097 -13.33037 -13.19285 -13.15257 -12.80600 -12.63759 -12.14145 -12.01982 -11.85679 -11.66833 -11.18597 -11.05983 -10.78657 -10.64866 -10.56955 -10.39113 -10.29762 -10.04826 -9.81313 -9.61243 -9.54409 -9.46259 -9.09682 -8.65364 -8.44288 -8.37151 -6.99541 -6.18407 -3.22747 0.71318 1.26033 1.31623 2.10751 2.39228 3.14695 3.38324 3.46828 3.51225 3.68202 3.83890 4.03272 4.33962 4.54007 4.58899 4.74055 4.82524 4.87415 4.94095 5.05687 5.15185 5.21345 5.23040 5.24900 5.29989 5.42616 5.53046 5.60190 5.69674 5.80571 5.87985 5.98797 6.02591 6.08003 6.12521 6.18586 6.33688 6.42226 6.60924 6.68428 6.80395 6.86273 6.92125 6.96570 7.20148 7.60339 7.77171 7.99972 8.35946 8.43057 8.93993 9.73444 10.30024 11.13453 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.002811 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.848537 B = 9958.616238 C =10802.968297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.588 5.588 3 C 0.590 3.410 4 O -0.543 6.543 5 C -0.276 4.276 6 C 0.095 3.905 7 N -0.464 5.464 8 H 0.444 0.556 9 N -0.285 5.285 10 C 0.175 3.825 11 C -0.084 4.084 12 C -0.046 4.046 13 C -0.190 4.190 14 C 0.107 3.893 15 N -0.488 5.488 16 C 0.163 3.837 17 C 0.129 3.871 18 H 0.107 0.893 19 C -0.146 4.146 20 C 0.135 3.865 21 N -0.600 5.600 22 C -0.336 4.336 23 H 0.063 0.937 24 C -0.022 4.022 25 N -0.912 5.912 26 Si 1.061 2.939 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.294 1.294 30 C 0.125 3.875 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.210 0.790 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.185 0.815 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.049 0.951 43 H 0.265 0.735 44 H 0.036 0.964 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 18.205 3.208 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.318 5.318 3 C 0.380 3.620 4 O -0.423 6.423 5 C -0.291 4.291 6 C -0.054 4.054 7 N -0.170 5.170 8 H 0.289 0.711 9 N -0.106 5.106 10 C 0.005 3.995 11 C -0.088 4.088 12 C -0.073 4.073 13 C -0.210 4.210 14 C -0.050 4.050 15 N -0.197 5.197 16 C 0.005 3.995 17 C 0.026 3.974 18 H 0.125 0.875 19 C -0.185 4.185 20 C 0.009 3.991 21 N -0.328 5.328 22 C -0.463 4.463 23 H 0.081 0.919 24 C -0.224 4.224 25 N -0.553 5.553 26 Si 0.891 3.109 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.221 1.221 30 C -0.001 4.001 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.226 0.774 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.171 0.829 38 H 0.201 0.799 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.988 17.588 3.626 18.638 hybrid contribution -0.139 1.129 -0.707 1.339 sum 4.849 18.717 2.919 19.554 Atomic orbital electron populations 1.22651 0.80148 1.05541 1.01001 1.47559 1.06795 1.05364 1.72123 1.17193 0.86563 0.82195 0.76003 1.90659 1.13383 1.86393 1.51828 1.21293 0.92923 0.93626 1.21246 1.24348 0.97551 0.87704 0.95830 1.46037 1.10304 1.04418 1.56243 0.71087 1.77279 0.90913 1.18773 1.23659 1.21545 0.92258 0.89307 0.96339 1.18725 0.89526 0.98008 1.02561 1.21602 0.96887 0.94502 0.94311 1.21994 0.93313 1.02267 1.03429 1.22941 1.00056 0.90029 0.92011 1.67894 1.20490 1.16676 1.14641 1.23826 0.85998 0.95727 0.93925 1.22136 0.96888 0.81825 0.96582 0.87550 1.23202 1.00152 0.98581 0.96561 1.21806 0.93289 0.98305 0.85660 1.44586 1.44104 1.38435 1.05677 1.19703 1.03086 1.16166 1.07375 0.91937 1.25713 0.90939 1.05570 1.00183 1.70835 1.33568 1.09174 1.41681 0.83579 0.75889 0.75912 0.75566 1.21133 1.22030 1.22086 1.21696 0.93195 0.91168 0.94082 0.92395 0.91255 0.87277 0.77442 0.84833 0.84734 0.82868 0.79850 0.90420 0.91514 0.94788 0.93298 0.92418 0.94585 0.95297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 6.89 59.84 0.41 1.09 16 2 N -0.59 -9.10 2.82 -173.16 -0.49 -9.59 16 3 C 0.59 9.27 7.62 -12.58 -0.10 9.17 16 4 O -0.54 -9.66 11.61 5.27 0.06 -9.59 16 5 C -0.28 -3.71 6.11 -102.95 -0.63 -4.34 16 6 C 0.10 0.94 9.93 -16.63 -0.17 0.78 16 7 N -0.46 -4.18 7.20 30.81 0.22 -3.95 16 8 H 0.44 2.27 8.96 -182.85 -1.64 0.63 16 9 N -0.29 -3.49 12.64 34.58 0.44 -3.05 16 10 C 0.18 2.39 6.96 -80.56 -0.56 1.83 16 11 C -0.08 -1.16 5.78 -104.76 -0.61 -1.77 16 12 C -0.05 -0.53 9.92 -38.93 -0.39 -0.91 16 13 C -0.19 -1.88 10.10 -39.48 -0.40 -2.28 16 14 C 0.11 1.19 11.17 -17.49 -0.20 1.00 16 15 N -0.49 -7.06 10.35 -12.96 -0.13 -7.20 16 16 C 0.16 2.44 9.04 -17.18 -0.16 2.28 16 17 C 0.13 2.23 3.57 -66.10 -0.24 1.99 16 18 H 0.11 1.84 7.02 -51.93 -0.36 1.48 16 19 C -0.15 -2.47 6.54 -24.47 -0.16 -2.63 16 20 C 0.13 2.84 4.53 -2.41 -0.01 2.82 16 21 N -0.60 -14.25 2.84 -169.93 -0.48 -14.73 16 22 C -0.34 -9.08 9.98 -15.06 -0.15 -9.23 16 23 H 0.06 1.72 7.98 -52.49 -0.42 1.31 16 24 C -0.02 -0.60 5.08 -17.43 -0.09 -0.69 16 25 N -0.91 -25.67 12.99 55.49 0.72 -24.95 16 26 Si 1.06 24.51 30.01 -169.99 -5.10 19.41 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 30 C 0.12 2.56 6.29 -3.06 -0.02 2.54 16 31 H 0.06 0.66 7.44 -51.93 -0.39 0.27 16 32 H 0.07 0.79 5.22 -51.93 -0.27 0.52 16 33 H 0.11 1.93 4.75 -51.93 -0.25 1.69 16 34 H 0.21 1.54 4.44 -52.49 -0.23 1.31 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.19 2.95 5.40 -52.49 -0.28 2.67 16 39 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.72 4.22 -51.92 -0.22 0.50 16 42 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 43 H 0.26 7.25 6.30 -40.82 -0.26 7.00 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -33.69 357.77 -9.31 -43.00 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.49 Total: 3.62 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -3.45 Total: 1.65 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.27 Total: -63.48 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.06 Total: -9.59 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.10 Total: 19.41 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.69 -9.31 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.513 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds