Wall clock time and date at job start Sat Apr 11 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99487 * 2 1 4 4 O 1.21608 * 119.99692 * 186.52911 * 3 2 1 5 5 C 1.47423 * 120.00184 * 6.53633 * 3 2 1 6 6 C 1.41365 * 126.40920 * 7.83188 * 5 3 2 7 7 N 1.30446 * 108.07493 * 179.87831 * 6 5 3 8 8 N 1.39938 * 108.91593 * 0.39159 * 7 6 5 9 9 C 1.39910 * 125.77327 * 179.77545 * 8 7 6 10 10 C 1.39335 * 120.85512 * 179.69458 * 9 8 7 11 11 C 1.38011 * 119.08076 * 179.70596 * 10 9 8 12 12 N 1.31935 * 120.82811 * 0.57391 * 11 10 9 13 13 C 1.31939 * 121.89063 * 359.72206 * 12 11 10 14 14 C 1.38003 * 120.83128 * 359.97158 * 13 12 11 15 15 C 1.34602 * 108.44897 * 359.74483 * 8 7 6 16 16 C 1.46492 * 120.00200 * 180.02562 * 2 1 3 17 17 H 1.09002 * 110.78409 * 176.75986 * 16 2 1 18 18 C 1.55155 * 110.71957 * 299.99938 * 16 2 1 19 19 C 1.54911 * 101.61614 * 153.84686 * 18 16 2 20 20 N 1.47472 * 104.81035 * 323.03963 * 19 18 16 21 21 C 1.36938 * 125.62785 * 204.14394 * 20 19 18 22 22 H 1.08002 * 119.99664 * 179.91891 * 21 20 19 23 23 C 1.38807 * 120.00207 * 359.91623 * 21 20 19 24 24 N 1.31621 * 119.99983 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00045 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47165 * 90.00157 * 25 23 21 27 27 H 1.48506 * 109.47316 * 209.99801 * 25 23 21 28 28 H 1.48500 * 109.47307 * 329.99931 * 25 23 21 29 29 C 1.47024 * 108.72069 * 24.07576 * 20 19 18 30 30 H 1.09000 * 109.47227 * 275.90888 * 1 2 3 31 31 H 1.08998 * 109.47567 * 35.91092 * 1 2 3 32 32 H 1.09004 * 109.46956 * 155.91618 * 1 2 3 33 33 H 1.07998 * 125.95671 * 0.04353 * 6 5 3 34 34 H 1.08004 * 120.45523 * 359.96647 * 10 9 8 35 35 H 1.07997 * 119.58463 * 180.31230 * 11 10 9 36 36 H 1.08000 * 119.58313 * 180.02562 * 13 12 11 37 37 H 1.07994 * 120.46018 * 180.02562 * 14 13 12 38 38 H 1.07993 * 126.31248 * 180.02562 * 15 8 7 39 39 H 1.09002 * 111.00635 * 271.93538 * 18 16 2 40 40 H 1.08994 * 111.00708 * 35.75525 * 18 16 2 41 41 H 1.08999 * 110.37280 * 81.84836 * 19 18 16 42 42 H 1.09006 * 110.36720 * 204.16902 * 19 18 16 43 43 H 0.97003 * 120.00087 * 180.02562 * 24 23 21 44 44 H 1.09001 * 109.87627 * 239.55740 * 29 20 19 45 45 H 1.08993 * 109.88282 * 118.39036 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3490 1.1707 -0.1198 5 6 1.4088 2.4398 0.1453 6 6 0.0357 2.5898 0.4462 7 7 -0.2315 3.8658 0.4922 8 7 0.9377 4.5843 0.2181 9 6 1.0492 5.9782 0.1721 10 6 2.2706 6.5885 -0.1055 11 6 2.3377 7.9664 -0.1479 12 7 1.2672 8.7027 0.0814 13 6 0.0947 8.1624 0.3534 14 6 -0.0569 6.7919 0.4082 15 6 1.9369 3.7075 0.0071 16 6 2.1975 -1.2686 -0.0006 17 1 3.2720 -1.0948 -0.0581 18 6 1.8436 -2.1074 1.2558 19 6 2.1165 -3.5481 0.7561 20 7 1.6778 -3.5482 -0.6518 21 6 1.2873 -4.6497 -1.3656 22 1 0.9809 -4.5447 -2.3959 23 6 1.2854 -5.9011 -0.7650 24 7 1.6594 -6.0291 0.4905 25 14 0.7521 -7.4035 -1.7385 26 1 1.9330 -8.0025 -2.4108 27 1 0.1477 -8.4004 -0.8186 28 1 -0.2483 -7.0020 -2.7599 29 6 1.7274 -2.1700 -1.1616 30 1 -0.3634 0.1058 1.0222 31 1 -0.3634 0.8323 -0.6027 32 1 -0.3633 -0.9383 -0.4194 33 1 -0.6684 1.7879 0.6120 34 1 3.1517 5.9915 -0.2892 35 1 3.2791 8.4479 -0.3674 36 1 -0.7574 8.8008 0.5347 37 1 -1.0195 6.3560 0.6310 38 1 2.9626 3.9510 -0.2270 39 1 2.4959 -1.8537 2.0915 40 1 0.7959 -1.9803 1.5281 41 1 3.1801 -3.7774 0.8217 42 1 1.5363 -4.2667 1.3351 43 1 1.6585 -6.9036 0.9101 44 1 0.7357 -1.8614 -1.4924 45 1 2.4333 -2.1063 -1.9897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033541513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:12 Heat of formation + Delta-G solvation = 143.829224 kcal Electronic energy + Delta-G solvation = -28496.478490 eV Core-core repulsion = 24518.095800 eV Total energy + Delta-G solvation = -3978.382690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24317 -40.49310 -39.51177 -37.27825 -35.24302 -34.54953 -32.25051 -32.04644 -30.88967 -30.47431 -29.20377 -27.65771 -26.91736 -25.13243 -24.35291 -24.23158 -22.41416 -21.57851 -20.28034 -20.22611 -19.35351 -18.58578 -17.08090 -16.98576 -16.51646 -16.22699 -16.13455 -16.05501 -15.42952 -15.02233 -14.71512 -14.66436 -14.32634 -14.17272 -14.09596 -13.84143 -13.43217 -13.09460 -12.95498 -12.41016 -12.36837 -11.94811 -11.74466 -11.55974 -11.48542 -11.31363 -11.05256 -10.88747 -10.82640 -10.46548 -10.17687 -10.13318 -9.84182 -9.82842 -9.77029 -9.74291 -9.56884 -8.93314 -8.68434 -8.37189 -6.87326 -5.68190 -3.10634 0.10122 0.50277 1.49309 1.66447 1.85635 3.06079 3.23741 3.34037 3.38532 3.43636 3.45317 3.80423 3.88319 4.09688 4.34323 4.37026 4.47321 4.55473 4.61330 4.83792 4.92265 5.06119 5.12555 5.19645 5.21412 5.30683 5.41190 5.45516 5.51639 5.57239 5.68489 5.73735 5.87787 5.92728 5.96967 6.23723 6.32703 6.42985 6.51333 6.55171 6.69702 6.95260 7.02784 7.37895 7.47073 7.55679 7.59950 7.81787 8.26891 8.32812 9.18387 9.79019 10.42999 11.35456 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036694 B = 0.001917 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.892681 B =14599.950891 C =14835.671358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.593 5.593 3 C 0.591 3.409 4 O -0.548 6.548 5 C -0.264 4.264 6 C 0.081 3.919 7 N -0.290 5.290 8 N -0.322 5.322 9 C 0.205 3.795 10 C -0.196 4.196 11 C 0.129 3.871 12 N -0.493 5.493 13 C 0.124 3.876 14 C -0.172 4.172 15 C 0.126 3.874 16 C 0.128 3.872 17 H 0.105 0.895 18 C -0.152 4.152 19 C 0.153 3.847 20 N -0.602 5.602 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.128 3.872 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.217 0.783 34 H 0.146 0.854 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.151 0.849 38 H 0.194 0.806 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.015 0.985 42 H 0.110 0.890 43 H 0.253 0.747 44 H 0.030 0.970 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 26.216 1.482 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.324 5.324 3 C 0.380 3.620 4 O -0.427 6.427 5 C -0.278 4.278 6 C -0.108 4.108 7 N -0.106 5.106 8 N -0.095 5.095 9 C 0.104 3.896 10 C -0.219 4.219 11 C -0.028 4.028 12 N -0.203 5.203 13 C -0.032 4.032 14 C -0.194 4.194 15 C -0.019 4.019 16 C 0.025 3.975 17 H 0.123 0.877 18 C -0.191 4.191 19 C 0.028 3.972 20 N -0.329 5.329 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.746 3.254 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.001 3.999 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.233 0.767 34 H 0.163 0.837 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.169 0.831 38 H 0.211 0.789 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.033 0.967 42 H 0.127 0.873 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.672 27.816 1.599 28.103 hybrid contribution 0.277 -2.455 -0.604 2.544 sum -3.395 25.361 0.995 25.606 Atomic orbital electron populations 1.22328 0.80304 1.04372 1.01311 1.47567 1.06745 1.05675 1.72377 1.17129 0.86299 0.82272 0.76346 1.90770 1.13691 1.87103 1.51115 1.20452 0.94767 0.93801 1.18802 1.25370 0.95729 0.94328 0.95356 1.77304 1.04538 1.05190 1.23613 1.45615 1.07648 1.03841 1.52370 1.17838 0.95325 0.79118 0.97291 1.21978 0.96826 0.97290 1.05790 1.22703 0.97579 0.89210 0.93311 1.67727 0.99436 1.40942 1.12180 1.22782 0.95458 0.91765 0.93229 1.21975 0.99410 0.94550 1.03468 1.23044 0.95084 0.88245 0.95571 1.22271 0.97100 0.80990 0.97150 0.87735 1.23386 1.00814 0.98951 0.95961 1.21957 0.98168 0.91319 0.85759 1.44450 1.77863 1.01108 1.09480 1.19061 1.36729 0.84679 0.94602 0.90458 1.24795 1.01754 0.97547 0.96540 1.69786 1.53848 1.22356 1.11023 0.86063 0.78138 0.82591 0.78622 1.21618 1.21645 1.20703 1.21543 0.97915 0.86294 0.94099 0.92127 0.90750 0.89133 0.76737 0.83667 0.81501 0.81623 0.83102 0.78942 0.92065 0.91736 0.96689 0.87267 0.93671 0.95244 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 7.40 59.85 0.44 1.11 16 2 N -0.59 -8.80 2.89 -173.11 -0.50 -9.30 16 3 C 0.59 8.96 7.65 -12.52 -0.10 8.87 16 4 O -0.55 -10.04 16.30 5.27 0.09 -9.95 16 5 C -0.26 -3.19 5.92 -105.05 -0.62 -3.82 16 6 C 0.08 0.83 9.87 -16.95 -0.17 0.67 16 7 N -0.29 -3.19 11.87 30.88 0.37 -2.83 16 8 N -0.32 -3.31 3.76 -10.03 -0.04 -3.35 16 9 C 0.21 1.80 6.73 -83.36 -0.56 1.24 16 10 C -0.20 -1.33 9.52 -39.26 -0.37 -1.70 16 11 C 0.13 0.83 11.18 -17.59 -0.20 0.63 16 12 N -0.49 -3.93 10.36 -13.32 -0.14 -4.07 16 13 C 0.12 0.84 11.17 -17.59 -0.20 0.65 16 14 C -0.17 -1.33 9.73 -39.26 -0.38 -1.71 16 15 C 0.13 1.32 10.65 -16.42 -0.17 1.15 16 16 C 0.13 2.31 3.36 -66.10 -0.22 2.09 16 17 H 0.10 2.05 7.01 -51.93 -0.36 1.69 16 18 C -0.15 -2.82 6.65 -24.58 -0.16 -2.98 16 19 C 0.15 3.64 5.89 -2.50 -0.01 3.62 16 20 N -0.60 -15.09 3.40 -170.03 -0.58 -15.67 16 21 C -0.22 -6.08 10.27 -15.06 -0.15 -6.23 16 22 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 24 N -0.92 -26.38 10.09 55.49 0.56 -25.82 16 25 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 C 0.13 2.65 6.77 -3.06 -0.02 2.63 16 30 H 0.06 0.56 7.26 -51.93 -0.38 0.19 16 31 H 0.07 0.67 5.43 -51.93 -0.28 0.39 16 32 H 0.09 1.15 6.18 -51.93 -0.32 0.83 16 33 H 0.22 1.67 4.51 -52.49 -0.24 1.43 16 34 H 0.15 0.69 6.85 -52.48 -0.36 0.33 16 35 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.15 1.10 7.78 -52.49 -0.41 0.69 16 38 H 0.19 1.56 7.09 -52.49 -0.37 1.19 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.13 7.34 -51.93 -0.38 0.75 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.11 2.90 5.88 -51.93 -0.31 2.59 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.03 0.58 6.02 -51.93 -0.31 0.27 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -34.17 365.80 -8.13 -42.30 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.38 Total: 0.64 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -3.00 Total: 5.82 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.33 Total: -61.03 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.17 -8.13 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033541513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.128 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds