Wall clock time and date at job start Sat Apr 11 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00292 * 2 1 4 4 O 1.21509 * 119.99873 * 174.41295 * 3 2 1 5 5 C 1.48178 * 119.99572 * 354.13672 * 3 2 1 6 6 C 1.39133 * 119.68814 * 173.54227 * 5 3 2 7 7 C 1.39279 * 118.97066 * 179.97438 * 6 5 3 8 8 N 1.39963 * 120.81884 * 180.02562 * 7 6 5 9 9 C 1.37148 * 126.48563 * 179.71561 * 8 7 6 10 10 C 1.34630 * 106.83190 * 179.84159 * 9 8 7 11 11 N 1.34146 * 108.21072 * 0.41681 * 10 9 8 12 12 C 1.30492 * 109.36630 * 359.73597 * 11 10 9 13 13 C 1.39264 * 118.35870 * 359.97438 * 7 6 5 14 14 C 1.38333 * 119.28058 * 359.97438 * 13 7 6 15 15 N 1.31597 * 120.97974 * 359.74047 * 14 13 7 16 16 C 1.46504 * 119.99738 * 180.02562 * 2 1 3 17 17 H 1.08998 * 110.88979 * 176.12109 * 16 2 1 18 18 C 1.55165 * 111.00261 * 299.99989 * 16 2 1 19 19 C 1.54316 * 102.94122 * 153.57873 * 18 16 2 20 20 N 1.47022 * 107.27449 * 337.80608 * 19 18 16 21 21 C 1.36934 * 125.65400 * 178.92256 * 20 19 18 22 22 H 1.08003 * 120.00456 * 180.02562 * 21 20 19 23 23 C 1.38815 * 119.99584 * 0.02562 * 21 20 19 24 24 N 1.31615 * 120.00283 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99964 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47340 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47203 * 119.99717 * 25 23 21 28 28 H 1.48500 * 109.47683 * 240.00182 * 25 23 21 29 29 C 1.47429 * 108.69931 * 358.93961 * 20 19 18 30 30 H 1.09001 * 109.47550 * 85.09218 * 1 2 3 31 31 H 1.08995 * 109.47518 * 205.09283 * 1 2 3 32 32 H 1.09003 * 109.47200 * 325.09251 * 1 2 3 33 33 H 1.07992 * 120.51250 * 359.97438 * 6 5 3 34 34 H 1.08002 * 126.58243 * 359.97102 * 9 8 7 35 35 H 1.07999 * 125.89459 * 180.15249 * 10 9 8 36 36 H 1.07998 * 125.72142 * 179.97438 * 12 11 10 37 37 H 1.08003 * 120.35572 * 180.02562 * 13 7 6 38 38 H 1.08004 * 119.51469 * 180.02562 * 14 13 7 39 39 H 1.09003 * 110.71811 * 271.94069 * 18 16 2 40 40 H 1.08996 * 110.71984 * 35.03431 * 18 16 2 41 41 H 1.09002 * 109.88439 * 97.22237 * 19 18 16 42 42 H 1.08999 * 109.88492 * 218.23200 * 19 18 16 43 43 H 0.97005 * 120.00269 * 180.02562 * 24 23 21 44 44 H 1.09000 * 110.37162 * 265.28823 * 29 20 19 45 45 H 1.09002 * 110.36408 * 142.97133 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3496 1.1695 0.1025 5 6 1.4038 2.4470 -0.1311 6 6 2.0873 3.6513 0.0045 7 6 1.3817 4.8454 -0.1221 8 7 2.0306 6.0788 0.0066 9 6 1.4542 7.3187 -0.1010 10 6 2.4333 8.2220 0.0941 11 7 3.5797 7.5584 0.3060 12 6 3.3521 6.2745 0.2561 13 6 0.0148 4.7818 -0.3809 14 6 -0.5938 3.5456 -0.5036 15 7 0.1004 2.4341 -0.3845 16 6 2.1974 -1.2688 -0.0006 17 1 3.2716 -1.0974 -0.0694 18 6 1.8482 -2.1131 1.2536 19 6 2.1062 -3.5589 0.7796 20 7 2.0263 -3.5579 -0.6884 21 6 2.2170 -4.6451 -1.4988 22 1 2.1367 -4.5403 -2.5708 23 6 2.5136 -5.8818 -0.9426 24 7 2.6110 -6.0096 0.3637 25 14 2.7730 -7.3651 -2.0480 26 1 2.6093 -6.9596 -3.4671 27 1 4.1420 -7.9024 -1.8422 28 1 1.7748 -8.4124 -1.7137 29 6 1.7073 -2.1924 -1.1435 30 1 -0.3634 0.0879 -1.0239 31 1 -0.3634 -0.9306 0.4358 32 1 -0.3634 0.8428 0.5881 33 1 3.1484 3.6599 0.2048 34 1 0.4142 7.5298 -0.3014 35 1 2.3167 9.2955 0.0780 36 1 4.0903 5.4976 0.3902 37 1 -0.5636 5.6879 -0.4855 38 1 -1.6536 3.4919 -0.7048 39 1 2.5042 -1.8572 2.0856 40 1 0.8033 -1.9762 1.5319 41 1 3.0979 -3.8815 1.0967 42 1 1.3497 -4.2254 1.1939 43 1 2.8186 -6.8738 0.7524 44 1 0.6324 -2.0815 -1.2864 45 1 2.2389 -1.9668 -2.0680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033554367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:24 Heat of formation + Delta-G solvation = 128.807369 kcal Electronic energy + Delta-G solvation = -28723.145755 eV Core-core repulsion = 24744.111668 eV Total energy + Delta-G solvation = -3979.034087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.87841 -41.01027 -39.35520 -37.37322 -35.56942 -34.71334 -32.40997 -31.89231 -31.01367 -29.94720 -29.22423 -27.60624 -26.77611 -25.24924 -24.71157 -24.13150 -22.27439 -21.45461 -20.80949 -20.13960 -19.52949 -18.58717 -17.47100 -16.99351 -16.55628 -16.31324 -16.16164 -16.01302 -15.41644 -15.03136 -14.80701 -14.62803 -14.38195 -14.07790 -14.01373 -13.93363 -13.77425 -12.95069 -12.86532 -12.53616 -12.42645 -12.30696 -12.06556 -11.75289 -11.68051 -10.95782 -10.87092 -10.79479 -10.65752 -10.47064 -10.20970 -10.06580 -9.83948 -9.83424 -9.75222 -9.63955 -9.51899 -9.05895 -8.64334 -8.38838 -6.86236 -5.73000 -3.07227 0.01187 0.28591 1.70452 1.96965 2.52903 2.64991 2.90048 3.39617 3.41687 3.45221 3.47631 3.71522 3.91322 4.00150 4.15327 4.30721 4.42443 4.49536 4.64163 4.86707 4.91345 5.02875 5.14651 5.19596 5.33366 5.39515 5.43268 5.60517 5.66268 5.70514 5.75243 5.77427 5.88684 6.13301 6.16331 6.18700 6.27547 6.48515 6.55791 6.60527 6.66013 6.87970 7.20786 7.46008 7.47128 7.54193 7.58895 7.80685 8.09036 8.23143 9.19473 9.79321 10.44088 11.38590 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.002064 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.291703 B =13562.249591 C =13929.743387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.575 5.575 3 C 0.562 3.438 4 O -0.533 6.533 5 C 0.121 3.879 6 C -0.131 4.131 7 C 0.175 3.825 8 N -0.416 5.416 9 C -0.054 4.054 10 C -0.018 4.018 11 N -0.481 5.481 12 C 0.200 3.800 13 C -0.172 4.172 14 C 0.124 3.876 15 N -0.452 5.452 16 C 0.120 3.880 17 H 0.107 0.893 18 C -0.152 4.152 19 C 0.179 3.821 20 N -0.603 5.603 21 C -0.228 4.228 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.913 3.087 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.133 3.867 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.157 0.843 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.214 0.786 37 H 0.147 0.853 38 H 0.175 0.825 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.252 0.748 44 H 0.025 0.975 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 26.232 0.748 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.304 5.304 3 C 0.348 3.652 4 O -0.410 6.410 5 C -0.018 4.018 6 C -0.154 4.154 7 C 0.074 3.926 8 N -0.096 5.096 9 C -0.183 4.183 10 C -0.163 4.163 11 N -0.198 5.198 12 C -0.081 4.081 13 C -0.194 4.194 14 C -0.035 4.035 15 N -0.165 5.165 16 C 0.017 3.983 17 H 0.125 0.875 18 C -0.191 4.191 19 C 0.054 3.946 20 N -0.329 5.329 21 C -0.356 4.356 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.744 3.256 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.005 3.995 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.175 0.825 34 H 0.198 0.802 35 H 0.195 0.805 36 H 0.230 0.770 37 H 0.164 0.836 38 H 0.192 0.808 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.839 25.483 0.874 26.676 hybrid contribution -0.412 -0.268 -0.605 0.780 sum -8.251 25.216 0.269 26.533 Atomic orbital electron populations 1.22093 0.78255 1.02557 1.02679 1.47711 1.08016 1.05301 1.69407 1.17755 0.86493 0.82788 0.78196 1.90800 1.13040 1.86510 1.50644 1.21176 0.89966 0.93644 0.96985 1.21766 1.02560 0.89900 1.01173 1.17948 0.92341 0.84049 0.98285 1.43223 1.09564 1.04480 1.52334 1.22821 1.01126 0.82926 1.11419 1.22450 0.88220 1.00071 1.05540 1.70393 1.27728 1.02815 1.18830 1.25544 0.83649 0.95801 1.03146 1.22084 0.92668 1.01288 1.03368 1.22905 1.00844 0.86247 0.93473 1.68272 1.06677 1.30672 1.10883 1.22594 0.97359 0.80742 0.97655 0.87472 1.23254 1.00682 0.98599 0.96592 1.21145 1.01094 0.88876 0.83452 1.44391 1.83149 1.03129 1.02281 1.19098 1.41168 0.85925 0.89407 0.90294 1.24820 1.01878 0.97713 0.96044 1.69965 1.54919 1.23325 1.08662 0.86020 0.77439 0.82727 0.79420 1.20488 1.21723 1.21747 1.21740 0.97313 0.85844 0.94568 0.92031 0.91360 0.89640 0.82538 0.80195 0.80534 0.76953 0.83572 0.80844 0.91821 0.91945 0.93255 0.93573 0.93737 0.95734 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 7.69 59.84 0.46 1.53 16 2 N -0.57 -8.80 2.91 -172.47 -0.50 -9.30 16 3 C 0.56 8.53 7.65 -12.18 -0.09 8.44 16 4 O -0.53 -9.57 15.74 5.36 0.08 -9.49 16 5 C 0.12 1.41 6.55 -83.04 -0.54 0.86 16 6 C -0.13 -1.30 9.06 -38.86 -0.35 -1.65 16 7 C 0.18 1.42 6.67 -83.38 -0.56 0.87 16 8 N -0.42 -3.41 2.99 -61.91 -0.18 -3.60 16 9 C -0.05 -0.36 10.89 -16.45 -0.18 -0.54 16 10 C -0.02 -0.14 11.85 -17.82 -0.21 -0.35 16 11 N -0.48 -5.07 11.24 -14.47 -0.16 -5.23 16 12 C 0.20 1.82 11.95 -89.59 -1.07 0.75 16 13 C -0.17 -1.01 9.55 -39.17 -0.37 -1.38 16 14 C 0.12 0.79 11.17 -17.62 -0.20 0.59 16 15 N -0.45 -4.38 6.19 -9.86 -0.06 -4.44 16 16 C 0.12 2.21 3.43 -65.78 -0.23 1.99 16 17 H 0.11 2.18 7.05 -51.93 -0.37 1.81 16 18 C -0.15 -2.86 6.50 -24.90 -0.16 -3.02 16 19 C 0.18 4.32 5.37 -3.07 -0.02 4.31 16 20 N -0.60 -15.35 3.39 -170.07 -0.58 -15.92 16 21 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 22 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 23 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 24 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 25 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.13 2.75 6.79 -2.53 -0.02 2.74 16 30 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 31 H 0.07 0.88 6.38 -51.93 -0.33 0.55 16 32 H 0.09 0.93 5.79 -51.93 -0.30 0.62 16 33 H 0.16 1.50 6.51 -52.49 -0.34 1.16 16 34 H 0.18 0.57 7.23 -52.49 -0.38 0.19 16 35 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.21 1.44 7.15 -52.49 -0.38 1.06 16 37 H 0.15 0.43 6.94 -52.48 -0.36 0.06 16 38 H 0.17 0.51 8.06 -52.48 -0.42 0.08 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.07 6.45 -51.93 -0.34 0.73 16 41 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 42 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.03 0.49 6.97 -51.93 -0.36 0.13 16 45 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -34.58 366.41 -9.70 -44.29 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.58 Total: -0.80 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -3.79 Total: 8.29 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.92 Total: -64.87 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.58 -9.70 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033554367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.092 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds