Wall clock time and date at job start Sat Apr 11 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99920 * 2 1 4 4 O 1.21510 * 120.00073 * 176.89654 * 3 2 1 5 5 C 1.48182 * 119.99960 * 356.89811 * 3 2 1 6 6 C 1.39127 * 119.69389 * 187.45649 * 5 3 2 7 7 C 1.39277 * 118.97411 * 179.71325 * 6 5 3 8 8 N 1.39971 * 120.81865 * 180.28215 * 7 6 5 9 9 C 1.37148 * 126.47644 * 180.26981 * 8 7 6 10 10 C 1.34630 * 106.82452 * 179.97438 * 9 8 7 11 11 N 1.34153 * 108.21162 * 0.02562 * 10 9 8 12 12 C 1.30489 * 109.36152 * 359.74540 * 11 10 9 13 13 C 1.39267 * 118.35886 * 0.54231 * 7 6 5 14 14 C 1.38340 * 119.27566 * 359.73576 * 13 7 6 15 15 N 1.31592 * 120.98047 * 359.97273 * 14 13 7 16 16 C 1.46501 * 120.00110 * 180.02562 * 2 1 3 17 17 H 1.08997 * 110.63815 * 178.31381 * 16 2 1 18 18 C 1.55154 * 110.72024 * 54.97421 * 16 2 1 19 19 C 1.55130 * 101.48621 * 205.96843 * 18 16 2 20 20 N 1.47427 * 104.72161 * 37.29529 * 19 18 16 21 21 C 1.36935 * 125.65078 * 155.81260 * 20 19 18 22 22 H 1.08001 * 120.00218 * 186.71963 * 21 20 19 23 23 C 1.38809 * 119.99688 * 6.72650 * 21 20 19 24 24 N 1.31619 * 120.00443 * 34.66629 * 23 21 20 25 25 Si 1.86804 * 119.99844 * 214.67030 * 23 21 20 26 26 H 1.48503 * 109.47444 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.47042 * 299.99850 * 25 23 21 28 28 H 1.48501 * 109.47053 * 59.99677 * 25 23 21 29 29 C 1.47028 * 108.70155 * 335.55610 * 20 19 18 30 30 H 1.09001 * 109.46929 * 276.19803 * 1 2 3 31 31 H 1.08996 * 109.47042 * 36.19887 * 1 2 3 32 32 H 1.09001 * 109.46462 * 156.19972 * 1 2 3 33 33 H 1.07998 * 120.51297 * 359.97438 * 6 5 3 34 34 H 1.07995 * 126.59307 * 359.97438 * 9 8 7 35 35 H 1.08000 * 125.89496 * 180.02562 * 10 9 8 36 36 H 1.07998 * 125.71438 * 180.24900 * 12 11 10 37 37 H 1.07998 * 120.36207 * 179.71578 * 13 7 6 38 38 H 1.08004 * 119.50905 * 180.02562 * 14 13 7 39 39 H 1.08996 * 111.00596 * 324.20856 * 18 16 2 40 40 H 1.08998 * 111.00275 * 88.02583 * 18 16 2 41 41 H 1.08998 * 110.49780 * 278.45681 * 19 18 16 42 42 H 1.08996 * 110.34527 * 156.05912 * 19 18 16 43 43 H 0.97002 * 119.99422 * 356.29364 * 24 23 21 44 44 H 1.08998 * 109.88657 * 120.70421 * 29 20 19 45 45 H 1.09000 * 109.87668 * 241.86735 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3527 1.1680 0.0570 5 6 1.3996 2.4496 -0.0694 6 6 2.1001 3.6414 -0.2259 7 6 1.3898 4.8374 -0.2955 8 7 2.0550 6.0581 -0.4585 9 6 1.4753 7.2986 -0.5357 10 6 2.4750 8.1870 -0.6901 11 7 3.6352 7.5137 -0.7078 12 6 3.3976 6.2386 -0.5649 13 6 0.0017 4.7892 -0.1933 14 6 -0.6228 3.5653 -0.0329 15 7 0.0750 2.4510 0.0235 16 6 2.1976 -1.2687 -0.0006 17 1 3.2726 -1.0916 -0.0305 18 6 1.7507 -2.1601 -1.1893 19 6 2.0692 -3.5787 -0.6485 20 7 1.7325 -3.5173 0.7855 21 6 1.4005 -4.5866 1.5738 22 1 1.0645 -4.4264 2.5876 23 6 1.4959 -5.8765 1.0699 24 7 2.4535 -6.1820 0.2201 25 14 0.2651 -7.1788 1.5976 26 1 0.5822 -8.4626 0.9218 27 1 0.3390 -7.3623 3.0694 28 1 -1.1049 -6.7468 1.2209 29 6 1.8183 -2.1186 1.2304 30 1 -0.3633 0.1110 1.0217 31 1 -0.3633 0.8293 -0.6069 32 1 -0.3632 -0.9403 -0.4147 33 1 3.1778 3.6388 -0.2967 34 1 0.4196 7.5203 -0.4829 35 1 2.3624 9.2570 -0.7834 36 1 4.1430 5.4576 -0.5382 37 1 -0.5808 5.6975 -0.2384 38 1 -1.6991 3.5235 0.0463 39 1 0.6850 -2.0435 -1.3861 40 1 2.3369 -1.9430 -2.0823 41 1 3.1264 -3.8090 -0.7804 42 1 1.4523 -4.3233 -1.1515 43 1 3.0596 -5.4936 -0.0954 44 1 0.8542 -1.7944 1.6220 45 1 2.5849 -2.0206 1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033554368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:27 Heat of formation + Delta-G solvation = 130.986473 kcal Electronic energy + Delta-G solvation = -28794.291139 eV Core-core repulsion = 24815.351545 eV Total energy + Delta-G solvation = -3978.939594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.91474 -41.08696 -39.45784 -37.56904 -35.64917 -34.84636 -32.53924 -31.97424 -31.06087 -29.98256 -29.22911 -27.80566 -26.78636 -25.14017 -24.74734 -24.12684 -22.34251 -21.49659 -20.88302 -20.26953 -19.59208 -18.63796 -17.61868 -17.54163 -16.62968 -16.42207 -16.22499 -16.09461 -15.49619 -15.11134 -14.84569 -14.45479 -14.36205 -14.28493 -13.98998 -13.88900 -13.72840 -13.22283 -13.08491 -12.85951 -12.63717 -12.37357 -12.20290 -11.78415 -11.67313 -11.08316 -10.84274 -10.77108 -10.66094 -10.44799 -10.38804 -10.08488 -10.01079 -9.88039 -9.68280 -9.66124 -9.52555 -9.09270 -8.48481 -8.27197 -6.97781 -6.21370 -3.05666 -0.03640 0.23923 1.66526 1.93059 2.47701 2.61698 2.82008 3.35697 3.49245 3.53969 3.65852 3.71887 3.86724 3.95883 4.12069 4.26875 4.37891 4.56335 4.58964 4.82820 4.88012 4.98458 5.09559 5.15158 5.19667 5.19800 5.32937 5.44720 5.52463 5.63175 5.65154 5.70963 5.86658 5.94794 6.07385 6.12392 6.17693 6.33349 6.45655 6.56949 6.57272 6.77880 6.91093 6.97513 7.14544 7.40251 7.43030 7.75575 8.01772 8.48333 8.98783 9.82998 10.36211 11.19782 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.002095 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.171610 B =13359.236165 C =13895.933080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.574 5.574 3 C 0.563 3.437 4 O -0.535 6.535 5 C 0.121 3.879 6 C -0.131 4.131 7 C 0.177 3.823 8 N -0.416 5.416 9 C -0.054 4.054 10 C -0.017 4.017 11 N -0.481 5.481 12 C 0.200 3.800 13 C -0.171 4.171 14 C 0.124 3.876 15 N -0.452 5.452 16 C 0.123 3.877 17 H 0.106 0.894 18 C -0.144 4.144 19 C 0.144 3.856 20 N -0.602 5.602 21 C -0.348 4.348 22 H 0.070 0.930 23 C -0.025 4.025 24 N -0.912 5.912 25 Si 1.067 2.933 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.133 3.867 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.157 0.843 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.214 0.786 37 H 0.147 0.853 38 H 0.175 0.825 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.058 0.942 43 H 0.269 0.731 44 H 0.033 0.967 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 26.990 -3.891 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.303 5.303 3 C 0.348 3.652 4 O -0.412 6.412 5 C -0.017 4.017 6 C -0.154 4.154 7 C 0.075 3.925 8 N -0.096 5.096 9 C -0.183 4.183 10 C -0.162 4.162 11 N -0.197 5.197 12 C -0.081 4.081 13 C -0.194 4.194 14 C -0.034 4.034 15 N -0.165 5.165 16 C 0.020 3.980 17 H 0.124 0.876 18 C -0.183 4.183 19 C 0.018 3.982 20 N -0.330 5.330 21 C -0.475 4.475 22 H 0.088 0.912 23 C -0.227 4.227 24 N -0.553 5.553 25 Si 0.897 3.103 26 H -0.212 1.212 27 H -0.220 1.220 28 H -0.222 1.222 29 C 0.006 3.994 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.175 0.825 34 H 0.198 0.802 35 H 0.195 0.805 36 H 0.230 0.770 37 H 0.165 0.835 38 H 0.192 0.808 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.327 24.786 -3.905 26.139 hybrid contribution -0.070 2.196 0.298 2.218 sum -7.398 26.982 -3.606 28.209 Atomic orbital electron populations 1.22430 0.78018 1.03660 1.03041 1.47739 1.08186 1.05090 1.69300 1.17760 0.86518 0.82814 0.78084 1.90797 1.12786 1.86592 1.50991 1.21154 0.89725 0.93678 0.97139 1.21747 1.02641 0.89916 1.01090 1.17952 0.92094 0.84313 0.98116 1.43223 1.08149 1.04951 1.53316 1.22826 1.00816 0.83045 1.11584 1.22458 0.87628 1.00154 1.05995 1.70399 1.28177 1.02694 1.18458 1.25538 0.82944 0.96103 1.03563 1.22089 0.92288 1.01403 1.03582 1.22958 1.01142 0.86314 0.93031 1.68296 1.06718 1.29620 1.11858 1.22342 0.97249 0.81282 0.97085 0.87581 1.23250 1.01364 0.97085 0.96595 1.21581 0.98050 0.92870 0.85657 1.44561 1.82008 1.01540 1.04872 1.19684 1.44289 0.85868 0.97622 0.91217 1.25714 0.99642 0.97011 1.00362 1.70859 1.12900 1.34815 1.36767 0.83446 0.75787 0.75665 0.75371 1.21178 1.22034 1.22189 1.21490 0.98375 0.85870 0.93639 0.92375 0.87760 0.91236 0.82517 0.80168 0.80505 0.76962 0.83510 0.80765 0.90883 0.91450 0.95591 0.92366 0.91850 0.94959 0.95645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 8.08 59.85 0.48 1.39 16 2 N -0.57 -8.76 2.88 -172.82 -0.50 -9.26 16 3 C 0.56 8.42 7.66 -12.17 -0.09 8.33 16 4 O -0.53 -9.41 15.72 5.36 0.08 -9.32 16 5 C 0.12 1.39 6.62 -83.04 -0.55 0.84 16 6 C -0.13 -1.27 9.06 -38.87 -0.35 -1.63 16 7 C 0.18 1.40 6.67 -83.37 -0.56 0.85 16 8 N -0.42 -3.34 2.99 -61.92 -0.18 -3.52 16 9 C -0.05 -0.35 10.89 -16.45 -0.18 -0.53 16 10 C -0.02 -0.13 11.85 -17.81 -0.21 -0.35 16 11 N -0.48 -4.98 11.24 -14.47 -0.16 -5.15 16 12 C 0.20 1.78 11.95 -89.61 -1.07 0.71 16 13 C -0.17 -0.98 9.55 -39.16 -0.37 -1.35 16 14 C 0.12 0.77 11.17 -17.62 -0.20 0.57 16 15 N -0.45 -4.33 6.02 -9.86 -0.06 -4.39 16 16 C 0.12 2.24 3.35 -66.10 -0.22 2.01 16 17 H 0.11 2.04 7.00 -51.93 -0.36 1.68 16 18 C -0.14 -2.58 6.60 -24.46 -0.16 -2.74 16 19 C 0.14 3.32 5.20 -2.41 -0.01 3.31 16 20 N -0.60 -15.31 3.36 -169.93 -0.57 -15.88 16 21 C -0.35 -9.86 10.01 -15.06 -0.15 -10.01 16 22 H 0.07 1.98 8.02 -52.49 -0.42 1.56 16 23 C -0.03 -0.72 4.95 -17.43 -0.09 -0.81 16 24 N -0.91 -27.56 12.97 55.49 0.72 -26.85 16 25 Si 1.07 25.34 30.03 -169.99 -5.11 20.24 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.13 2.85 6.88 -3.06 -0.02 2.83 16 30 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.10 1.14 5.20 -52.56 -0.27 0.86 16 32 H 0.07 0.94 6.14 -51.93 -0.32 0.62 16 33 H 0.16 1.46 6.51 -52.49 -0.34 1.12 16 34 H 0.18 0.54 7.22 -52.49 -0.38 0.16 16 35 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.21 1.39 7.15 -52.49 -0.38 1.01 16 37 H 0.15 0.41 6.94 -52.49 -0.36 0.04 16 38 H 0.18 0.49 8.06 -52.48 -0.42 0.06 16 39 H 0.07 1.23 6.15 -51.93 -0.32 0.91 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.64 7.04 -51.93 -0.37 0.27 16 42 H 0.06 1.45 7.55 -51.93 -0.39 1.06 16 43 H 0.27 8.12 5.81 -40.82 -0.24 7.89 16 44 H 0.03 0.68 7.08 -51.93 -0.37 0.31 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -35.64 365.33 -9.45 -45.09 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.43 Total: 0.11 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -3.75 Total: 3.42 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -0.76 Total: -65.04 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.11 Total: 20.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.64 -9.45 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033554368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.076 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds