Wall clock time and date at job start Sat Apr 11 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35047 * 126.39575 * 2 1 4 4 N 1.30496 * 108.69516 * 179.76607 * 3 2 1 5 5 C 1.34118 * 109.26121 * 0.37995 * 4 3 2 6 6 C 1.50698 * 125.98984 * 179.88025 * 5 4 3 7 7 H 1.09000 * 110.66006 * 331.50311 * 6 5 4 8 8 C 1.54602 * 110.83437 * 208.25561 * 6 5 4 9 9 N 1.48120 * 103.42416 * 204.45157 * 8 6 5 10 10 C 1.34778 * 127.02741 * 219.29058 * 9 8 6 11 11 O 1.21510 * 120.00380 * 6.31594 * 10 9 8 12 12 C 1.48153 * 119.99383 * 186.31741 * 10 9 8 13 13 C 1.39816 * 120.92333 * 189.87485 * 12 10 9 14 14 C 1.38148 * 119.00505 * 180.29710 * 13 12 10 15 15 N 1.31814 * 120.89161 * 359.43226 * 14 13 12 16 16 C 1.31808 * 122.04943 * 0.58784 * 15 14 13 17 17 C 1.38144 * 120.89797 * 359.70423 * 16 15 14 18 18 C 1.47481 * 105.93435 * 39.01987 * 9 8 6 19 19 C 1.54001 * 107.08503 * 334.78454 * 18 9 8 20 20 H 1.08999 * 110.32850 * 120.19600 * 19 18 9 21 21 N 1.46499 * 110.32609 * 242.40975 * 19 18 9 22 22 C 1.36938 * 120.00336 * 273.54231 * 21 19 18 23 23 H 1.07999 * 119.99608 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00286 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99909 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99966 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46882 * 60.00486 * 26 24 22 28 28 H 1.48506 * 109.46941 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47072 * 300.00386 * 26 24 22 30 30 C 1.34671 * 108.02221 * 359.62508 * 5 4 3 31 31 H 1.08989 * 109.47037 * 269.99954 * 1 2 3 32 32 H 1.08995 * 109.46742 * 29.99978 * 1 2 3 33 33 H 1.09000 * 109.46745 * 149.99444 * 1 2 3 34 34 H 1.08003 * 125.64819 * 0.02562 * 3 2 1 35 35 H 1.09001 * 110.61859 * 85.93437 * 8 6 5 36 36 H 1.09005 * 110.54795 * 322.92661 * 8 6 5 37 37 H 1.08008 * 120.49660 * 0.03191 * 13 12 10 38 38 H 1.08004 * 119.55152 * 179.70341 * 14 13 12 39 39 H 1.08000 * 119.54951 * 179.71724 * 16 15 14 40 40 H 1.08003 * 120.50171 * 179.97438 * 17 16 15 41 41 H 1.09006 * 109.90953 * 94.13902 * 18 9 8 42 42 H 1.08990 * 109.91555 * 215.22799 * 18 9 8 43 43 H 0.97002 * 119.99885 * 93.54476 * 21 19 18 44 44 H 0.97000 * 119.99995 * 179.97438 * 25 24 22 45 45 H 1.07993 * 126.59705 * 180.20930 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 0.0050 5 6 3.5461 -0.6504 0.0000 6 6 4.7891 -1.5024 0.0007 7 1 5.6147 -0.9786 -0.4812 8 6 4.5253 -2.8605 -0.6894 9 7 5.5480 -3.7523 -0.0955 10 6 6.2600 -4.7055 -0.7288 11 8 6.1754 -4.8265 -1.9349 12 6 7.1458 -5.6057 0.0457 13 6 8.0440 -6.4604 -0.6005 14 6 8.8470 -7.2876 0.1606 15 7 8.7820 -7.2699 1.4770 16 6 7.9497 -6.4800 2.1256 17 6 7.1064 -5.6246 1.4432 18 6 5.6324 -3.3796 1.3289 19 6 5.1692 -1.9152 1.4416 20 1 4.3019 -1.8418 2.0977 21 7 6.2593 -1.0736 1.9412 22 6 6.4562 -0.9372 3.2895 23 1 5.8081 -1.4503 3.9845 24 6 7.4895 -0.1402 3.7629 25 7 8.2796 0.4847 2.9159 26 14 7.7585 0.0453 5.6021 27 1 8.0304 -1.2869 6.1994 28 1 8.9164 0.9429 5.8449 29 1 6.5423 0.6277 6.2239 30 6 2.2773 -1.1018 -0.0001 31 1 -0.3633 0.0000 1.0276 32 1 -0.3632 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.9334 2.1145 0.0004 35 1 4.6665 -2.7773 -1.7670 36 1 3.5220 -3.2185 -0.4584 37 1 8.1060 -6.4767 -1.6786 38 1 9.5406 -7.9548 -0.3296 39 1 7.9268 -6.5016 3.2051 40 1 6.4266 -4.9804 1.9812 41 1 4.9795 -4.0219 1.9200 42 1 6.6608 -3.4745 1.6772 43 1 6.8416 -0.6130 1.3170 44 1 9.0014 1.0419 3.2467 45 1 1.9614 -2.1345 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070458805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:15 Heat of formation + Delta-G solvation = 114.659539 kcal Electronic energy + Delta-G solvation = -29476.188553 eV Core-core repulsion = 25496.540971 eV Total energy + Delta-G solvation = -3979.647583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.95084 -40.61393 -39.15907 -37.49216 -34.21552 -33.97439 -32.92629 -31.68846 -31.16484 -30.56871 -28.35551 -27.60009 -26.82621 -25.21713 -23.72688 -23.41493 -22.74083 -21.11804 -20.79439 -19.83579 -19.45063 -17.65529 -17.23653 -16.81484 -16.50565 -15.89314 -15.74874 -15.49942 -15.21404 -14.78587 -14.70261 -14.19815 -14.06596 -13.94762 -13.66542 -13.49248 -13.36218 -13.25574 -12.98746 -12.89831 -12.82192 -12.25162 -11.99477 -11.78623 -11.58150 -11.00229 -10.79957 -10.77639 -10.56199 -10.17921 -10.06899 -9.83136 -9.75823 -9.61613 -9.42150 -9.37064 -9.17028 -9.00843 -8.52228 -8.15687 -7.00318 -5.78635 -3.09276 0.78368 1.12043 2.16368 2.84513 2.94635 3.04045 3.36481 3.41786 3.46377 3.48153 3.90805 4.41850 4.45734 4.52994 4.55545 4.68435 4.80241 4.90708 4.91753 4.97720 5.04686 5.11884 5.15089 5.18350 5.30225 5.48751 5.53088 5.58821 5.67147 5.70907 5.76719 5.77889 5.83914 5.97123 6.06583 6.16770 6.25578 6.30664 6.39306 6.43503 6.62445 6.82298 6.93580 7.30236 7.63312 7.67033 7.91129 8.19612 8.34440 8.37937 9.49790 10.04556 10.39299 11.42983 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007120 B = 0.004602 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3931.712118 B = 6082.950607 C = 9272.922884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.468 5.468 3 C 0.177 3.823 4 N -0.470 5.470 5 C 0.038 3.962 6 C -0.028 4.028 7 H 0.097 0.903 8 C 0.118 3.882 9 N -0.604 5.604 10 C 0.576 3.424 11 O -0.544 6.544 12 C -0.081 4.081 13 C -0.119 4.119 14 C 0.088 3.912 15 N -0.473 5.473 16 C 0.095 3.905 17 C -0.155 4.155 18 C 0.056 3.944 19 C 0.183 3.817 20 H 0.067 0.933 21 N -0.707 5.707 22 C -0.249 4.249 23 H 0.070 0.930 24 C -0.005 4.005 25 N -0.925 5.925 26 Si 0.905 3.095 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.066 4.066 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.202 0.798 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.388 0.612 44 H 0.257 0.743 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 -8.721 -6.177 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.152 5.152 3 C -0.105 4.105 4 N -0.187 5.187 5 C -0.092 4.092 6 C -0.049 4.049 7 H 0.116 0.884 8 C -0.005 4.005 9 N -0.336 5.336 10 C 0.365 3.635 11 O -0.422 6.422 12 C -0.092 4.092 13 C -0.140 4.140 14 C -0.069 4.069 15 N -0.183 5.183 16 C -0.062 4.062 17 C -0.174 4.174 18 C -0.069 4.069 19 C 0.070 3.930 20 H 0.085 0.915 21 N -0.347 5.347 22 C -0.380 4.380 23 H 0.088 0.912 24 C -0.202 4.202 25 N -0.571 5.571 26 Si 0.736 3.264 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.198 4.198 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.218 0.782 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.183 0.817 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.223 0.777 44 H 0.067 0.933 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.718 -8.828 -6.182 16.670 hybrid contribution -0.973 0.503 0.531 1.218 sum -13.691 -8.324 -5.651 16.991 Atomic orbital electron populations 1.21971 0.77111 1.04284 1.03354 1.45373 1.07284 1.07110 1.55442 1.25003 0.85491 0.93487 1.06509 1.70231 1.18890 1.11542 1.18048 1.20160 0.92744 0.90435 1.05897 1.20724 0.94202 0.92070 0.97887 0.88446 1.22384 0.90782 0.88261 0.99122 1.48588 1.38781 1.34317 1.11961 1.17803 0.79439 0.79786 0.86457 1.90741 1.66161 1.71722 1.13595 1.20287 0.97521 0.97366 0.94025 1.22267 0.94672 0.94837 1.02185 1.22732 0.97449 0.97237 0.89449 1.67525 1.19529 1.20883 1.10365 1.22821 0.91208 0.91376 1.00785 1.23452 1.00669 0.99101 0.94219 1.24026 1.03354 0.99735 0.79824 1.21091 0.92370 0.87782 0.91763 0.91512 1.42422 1.33113 1.54239 1.04907 1.19130 1.11235 1.24576 0.83043 0.91197 1.24740 0.98287 0.99707 0.97459 1.69657 1.20230 1.34416 1.32845 0.86322 0.77268 0.77511 0.85348 1.21164 1.21692 1.21300 1.22341 0.90890 0.92342 1.14202 0.90756 0.89697 0.89944 0.78176 0.89660 0.90909 0.83769 0.82303 0.82082 0.81671 0.91857 0.88331 0.77723 0.93326 0.81198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.18 59.85 0.67 1.12 16 2 N -0.47 -5.19 3.15 -125.99 -0.40 -5.58 16 3 C 0.18 2.37 12.56 -90.38 -1.14 1.23 16 4 N -0.47 -8.42 11.25 -10.88 -0.12 -8.54 16 5 C 0.04 0.61 6.03 -82.86 -0.50 0.11 16 6 C -0.03 -0.46 3.28 -90.08 -0.30 -0.76 16 7 H 0.10 1.90 7.74 -51.93 -0.40 1.49 16 8 C 0.12 1.69 6.39 -2.31 -0.01 1.68 16 9 N -0.60 -9.46 3.29 -170.97 -0.56 -10.02 16 10 C 0.58 9.66 7.84 -12.19 -0.10 9.56 16 11 O -0.54 -10.31 16.68 5.36 0.09 -10.22 16 12 C -0.08 -1.22 5.88 -104.65 -0.62 -1.83 16 13 C -0.12 -1.60 9.68 -39.02 -0.38 -1.98 16 14 C 0.09 1.09 11.17 -17.59 -0.20 0.89 16 15 N -0.47 -6.58 10.33 -13.31 -0.14 -6.72 16 16 C 0.09 1.26 11.17 -17.60 -0.20 1.06 16 17 C -0.15 -2.15 8.44 -39.03 -0.33 -2.47 16 18 C 0.06 0.89 4.80 -2.98 -0.01 0.88 16 19 C 0.18 3.38 3.21 -66.56 -0.21 3.16 16 20 H 0.07 1.25 7.81 -51.93 -0.41 0.85 16 21 N -0.71 -16.86 5.08 -52.10 -0.26 -17.12 16 22 C -0.25 -6.54 9.97 -15.06 -0.15 -6.69 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 25 N -0.92 -27.54 13.06 55.49 0.72 -26.81 16 26 Si 0.90 21.82 29.55 -169.99 -5.02 16.79 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 C -0.07 -0.84 10.68 -16.56 -0.18 -1.01 16 31 H 0.07 0.39 8.14 -51.94 -0.42 -0.03 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.20 1.91 8.06 -52.48 -0.42 1.49 16 35 H 0.08 1.27 7.81 -51.93 -0.41 0.86 16 36 H 0.07 0.86 6.39 -51.93 -0.33 0.53 16 37 H 0.14 1.79 7.78 -52.48 -0.41 1.38 16 38 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.17 2.18 3.69 -52.48 -0.19 1.99 16 41 H 0.06 0.84 7.41 -51.93 -0.38 0.46 16 42 H 0.10 1.75 5.81 -51.93 -0.30 1.45 16 43 H 0.39 10.28 7.54 -40.82 -0.31 9.97 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.17 1.66 6.91 -52.49 -0.36 1.29 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -35.59 375.13 -9.37 -44.96 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.59 Total: 12.90 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -3.74 Total: 4.71 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -0.76 Total: -74.80 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.59 -9.37 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070458805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.621 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds