Wall clock time and date at job start Sat Apr 11 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35047 * 126.39575 * 2 1 4 4 N 1.30496 * 108.69516 * 179.76607 * 3 2 1 5 5 C 1.34118 * 109.26121 * 0.37995 * 4 3 2 6 6 C 1.50698 * 125.98984 * 179.88025 * 5 4 3 7 7 H 1.09000 * 110.66006 * 331.50311 * 6 5 4 8 8 C 1.54602 * 110.83437 * 208.25561 * 6 5 4 9 9 N 1.48120 * 103.42416 * 204.45157 * 8 6 5 10 10 C 1.34778 * 127.02741 * 219.29058 * 9 8 6 11 11 O 1.21510 * 120.00380 * 6.31594 * 10 9 8 12 12 C 1.48153 * 119.99383 * 186.31741 * 10 9 8 13 13 C 1.39816 * 120.92333 * 189.87485 * 12 10 9 14 14 C 1.38148 * 119.00505 * 180.29710 * 13 12 10 15 15 N 1.31814 * 120.89161 * 359.43226 * 14 13 12 16 16 C 1.31808 * 122.04943 * 0.58784 * 15 14 13 17 17 C 1.38144 * 120.89797 * 359.70423 * 16 15 14 18 18 C 1.47481 * 105.93435 * 39.01987 * 9 8 6 19 19 C 1.54001 * 107.08503 * 334.78454 * 18 9 8 20 20 H 1.08999 * 110.32850 * 120.19600 * 19 18 9 21 21 N 1.46499 * 110.32609 * 242.40975 * 19 18 9 22 22 C 1.36938 * 120.00336 * 273.54231 * 21 19 18 23 23 H 1.07999 * 119.99608 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00286 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99909 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99966 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46882 * 60.00486 * 26 24 22 28 28 H 1.48506 * 109.46941 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47072 * 300.00386 * 26 24 22 30 30 C 1.34671 * 108.02221 * 359.62508 * 5 4 3 31 31 H 1.08989 * 109.47037 * 269.99954 * 1 2 3 32 32 H 1.08995 * 109.46742 * 29.99978 * 1 2 3 33 33 H 1.09000 * 109.46745 * 149.99444 * 1 2 3 34 34 H 1.08003 * 125.64819 * 0.02562 * 3 2 1 35 35 H 1.09001 * 110.61859 * 85.93437 * 8 6 5 36 36 H 1.09005 * 110.54795 * 322.92661 * 8 6 5 37 37 H 1.08008 * 120.49660 * 0.03191 * 13 12 10 38 38 H 1.08004 * 119.55152 * 179.70341 * 14 13 12 39 39 H 1.08000 * 119.54951 * 179.71724 * 16 15 14 40 40 H 1.08003 * 120.50171 * 179.97438 * 17 16 15 41 41 H 1.09006 * 109.90953 * 94.13902 * 18 9 8 42 42 H 1.08990 * 109.91555 * 215.22799 * 18 9 8 43 43 H 0.97002 * 119.99885 * 93.54476 * 21 19 18 44 44 H 0.97000 * 119.99995 * 179.97438 * 25 24 22 45 45 H 1.07993 * 126.59705 * 180.20930 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 0.0050 5 6 3.5461 -0.6504 0.0000 6 6 4.7891 -1.5024 0.0007 7 1 5.6147 -0.9786 -0.4812 8 6 4.5253 -2.8605 -0.6894 9 7 5.5480 -3.7523 -0.0955 10 6 6.2600 -4.7055 -0.7288 11 8 6.1754 -4.8265 -1.9349 12 6 7.1458 -5.6057 0.0457 13 6 8.0440 -6.4604 -0.6005 14 6 8.8470 -7.2876 0.1606 15 7 8.7820 -7.2699 1.4770 16 6 7.9497 -6.4800 2.1256 17 6 7.1064 -5.6246 1.4432 18 6 5.6324 -3.3796 1.3289 19 6 5.1692 -1.9152 1.4416 20 1 4.3019 -1.8418 2.0977 21 7 6.2593 -1.0736 1.9412 22 6 6.4562 -0.9372 3.2895 23 1 5.8081 -1.4503 3.9845 24 6 7.4895 -0.1402 3.7629 25 7 8.2796 0.4847 2.9159 26 14 7.7585 0.0453 5.6021 27 1 8.0304 -1.2869 6.1994 28 1 8.9164 0.9429 5.8449 29 1 6.5423 0.6277 6.2239 30 6 2.2773 -1.1018 -0.0001 31 1 -0.3633 0.0000 1.0276 32 1 -0.3632 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.9334 2.1145 0.0004 35 1 4.6665 -2.7773 -1.7670 36 1 3.5220 -3.2185 -0.4584 37 1 8.1060 -6.4767 -1.6786 38 1 9.5406 -7.9548 -0.3296 39 1 7.9268 -6.5016 3.2051 40 1 6.4266 -4.9804 1.9812 41 1 4.9795 -4.0219 1.9200 42 1 6.6608 -3.4745 1.6772 43 1 6.8416 -0.6130 1.3170 44 1 9.0014 1.0419 3.2467 45 1 1.9614 -2.1345 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070458805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:14 Heat of formation + Delta-G solvation = 90.979698 kcal Electronic energy + Delta-G solvation = -29477.215388 eV Core-core repulsion = 25496.540971 eV Total energy + Delta-G solvation = -3980.674418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.96866 -41.77791 -40.33857 -38.87242 -35.84364 -35.10663 -34.07361 -33.09954 -32.45315 -31.89962 -29.55535 -28.95883 -27.67601 -26.53907 -25.38606 -24.47833 -23.95507 -22.23769 -22.05642 -21.01797 -20.70290 -19.09735 -18.69192 -18.00840 -17.67546 -17.10880 -16.87596 -16.46496 -16.41009 -16.31394 -15.87784 -15.51050 -15.32203 -15.10246 -14.87449 -14.83046 -14.62275 -14.48355 -14.27247 -13.75299 -13.58850 -13.35534 -13.28531 -13.21737 -12.89164 -12.73257 -12.51692 -12.21081 -12.13282 -11.88072 -11.69545 -11.41719 -10.99620 -10.94779 -10.72663 -10.47866 -10.37072 -10.17485 -9.84344 -9.28848 -8.89508 -7.88540 -5.18165 -0.33825 0.11040 1.19735 1.49804 1.52605 1.58334 1.67313 1.82553 2.07790 2.23830 2.59375 2.84637 3.22215 3.39945 3.51088 3.52967 3.74382 3.81231 3.94794 3.98069 4.00809 4.05223 4.07889 4.13901 4.31196 4.37274 4.43343 4.53343 4.55471 4.61033 4.67535 4.75656 4.79119 4.79913 4.82941 4.85686 4.97355 5.09545 5.13333 5.38307 5.40264 5.57029 5.62212 5.87116 6.29396 6.35887 6.42401 6.89376 6.90384 7.31796 7.37004 8.10025 8.34101 9.34802 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007120 B = 0.004602 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3931.712118 B = 6082.950607 C = 9272.922884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C 0.174 3.826 4 N -0.538 5.538 5 C -0.006 4.006 6 C -0.017 4.017 7 H 0.054 0.946 8 C 0.126 3.874 9 N -0.604 5.604 10 C 0.573 3.427 11 O -0.572 6.572 12 C -0.101 4.101 13 C -0.124 4.124 14 C 0.093 3.907 15 N -0.488 5.488 16 C 0.091 3.909 17 C -0.157 4.157 18 C 0.070 3.930 19 C 0.180 3.820 20 H 0.071 0.929 21 N -0.722 5.722 22 C -0.235 4.235 23 H 0.085 0.915 24 C -0.073 4.073 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.270 1.270 28 H -0.304 1.304 29 H -0.281 1.281 30 C -0.044 4.044 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.230 0.770 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.151 0.849 38 H 0.193 0.807 39 H 0.185 0.815 40 H 0.171 0.829 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.369 0.631 44 H 0.248 0.752 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 -10.699 -5.274 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.142 5.142 3 C -0.109 4.109 4 N -0.257 5.257 5 C -0.135 4.135 6 C -0.038 4.038 7 H 0.073 0.927 8 C 0.003 3.997 9 N -0.335 5.335 10 C 0.363 3.637 11 O -0.453 6.453 12 C -0.112 4.112 13 C -0.145 4.145 14 C -0.063 4.063 15 N -0.198 5.198 16 C -0.065 4.065 17 C -0.177 4.177 18 C -0.054 4.054 19 C 0.069 3.931 20 H 0.089 0.911 21 N -0.360 5.360 22 C -0.366 4.366 23 H 0.103 0.897 24 C -0.266 4.266 25 N -0.621 5.621 26 Si 0.797 3.203 27 H -0.196 1.196 28 H -0.231 1.231 29 H -0.207 1.207 30 C -0.178 4.178 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.246 0.754 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.169 0.831 38 H 0.210 0.790 39 H 0.202 0.798 40 H 0.188 0.812 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.200 0.800 44 H 0.056 0.944 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.568 -10.850 -5.265 19.693 hybrid contribution -0.245 1.118 0.163 1.156 sum -15.813 -9.732 -5.103 19.256 Atomic orbital electron populations 1.22368 0.73639 1.06472 1.04787 1.45655 1.09221 1.05888 1.53434 1.25485 0.84784 0.95198 1.05430 1.70112 1.21983 1.13009 1.20569 1.20148 0.93719 0.90248 1.09348 1.20464 0.93755 0.93157 0.96422 0.92706 1.22448 0.92123 0.86718 0.98396 1.48614 1.38839 1.34139 1.11890 1.18111 0.79320 0.80021 0.86269 1.90717 1.67108 1.72748 1.14740 1.20344 0.98249 0.97979 0.94658 1.22451 0.94571 0.94743 1.02728 1.23249 0.97154 0.96894 0.89038 1.67610 1.19835 1.21268 1.11066 1.23216 0.90601 0.90786 1.01947 1.23482 1.01105 0.99410 0.93701 1.23726 1.03010 0.98310 0.80400 1.21294 0.90729 0.88322 0.92727 0.91150 1.42593 1.34215 1.55223 1.03941 1.19592 1.10083 1.22602 0.84331 0.89717 1.25529 0.98950 1.00658 1.01423 1.69846 1.21320 1.36316 1.34618 0.85297 0.76602 0.77662 0.80714 1.19604 1.23061 1.20701 1.22712 0.89738 0.94016 1.11346 0.89599 0.87576 0.87889 0.75360 0.90396 0.87159 0.83146 0.79006 0.79828 0.81245 0.88101 0.90173 0.79955 0.94360 0.77840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 11.18 127.77 1.43 1.96 16 2 N -0.46 -8.93 3.15 -552.53 -1.74 -10.67 16 3 C 0.17 4.46 12.56 180.26 2.26 6.72 16 4 N -0.54 -19.72 11.25 -188.32 -2.12 -21.83 16 5 C -0.01 -0.18 6.03 41.39 0.25 0.07 16 6 C -0.02 -0.58 3.28 -10.44 -0.03 -0.61 16 7 H 0.05 2.32 7.74 -2.39 -0.02 2.30 16 8 C 0.13 3.51 6.39 86.61 0.55 4.06 16 9 N -0.60 -18.52 3.29 -813.13 -2.68 -21.20 16 10 C 0.57 19.08 7.84 86.88 0.68 19.76 16 11 O -0.57 -21.81 16.68 -3.75 -0.06 -21.87 16 12 C -0.10 -2.99 5.88 -19.88 -0.12 -3.11 16 13 C -0.12 -3.23 9.68 22.63 0.22 -3.01 16 14 C 0.09 2.13 11.17 84.67 0.95 3.08 16 15 N -0.49 -12.66 10.33 -196.01 -2.03 -14.69 16 16 C 0.09 2.25 11.17 84.67 0.95 3.19 16 17 C -0.16 -4.17 8.44 22.63 0.19 -3.98 16 18 C 0.07 2.16 4.80 86.53 0.42 2.57 16 19 C 0.18 6.64 3.21 45.88 0.15 6.78 16 20 H 0.07 2.55 7.81 -2.39 -0.02 2.54 16 21 N -0.72 -35.47 5.08 -318.73 -1.62 -37.09 16 22 C -0.23 -12.41 9.97 84.03 0.84 -11.57 16 23 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 25 N -0.97 -60.26 13.06 21.65 0.28 -59.97 16 26 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 29 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 30 C -0.04 -1.01 10.68 83.09 0.89 -0.12 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.23 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.08 2.32 7.81 -2.39 -0.02 2.30 16 36 H 0.11 2.26 6.39 -2.38 -0.02 2.24 16 37 H 0.15 3.64 7.78 -2.91 -0.02 3.62 16 38 H 0.19 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 40 H 0.17 4.21 3.69 -2.91 -0.01 4.20 16 41 H 0.10 2.38 7.41 -2.38 -0.02 2.37 16 42 H 0.08 2.83 5.81 -2.39 -0.01 2.81 16 43 H 0.37 20.75 7.54 -92.71 -0.70 20.05 16 44 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.20 3.05 6.91 -2.91 -0.02 3.03 16 Total: -1.00 -81.83 375.13 2.49 -79.34 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: 0.34 Total: 38.44 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 10.08 Total: 22.10 kcal Atomic # 7 Polarization: -155.56 SS G_CDS: -9.90 Total: -165.46 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -81.83 2.49 -79.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070458805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.322 kcal (2) G-P(sol) polarization free energy of solvation -81.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds