Wall clock time and date at job start Sat Apr 11 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35049 * 126.39767 * 2 1 4 4 N 1.30497 * 108.70065 * 180.02562 * 3 2 1 5 5 C 1.34132 * 109.25267 * 359.75725 * 4 3 2 6 6 C 1.34665 * 108.02325 * 0.39892 * 5 4 3 7 7 C 1.50700 * 126.58942 * 179.87729 * 6 5 4 8 8 H 1.09007 * 110.77486 * 201.44254 * 7 6 5 9 9 C 1.54329 * 110.71971 * 78.21084 * 7 6 5 10 10 N 1.47029 * 107.26564 * 219.44267 * 9 7 6 11 11 C 1.34774 * 125.64413 * 178.98648 * 10 9 7 12 12 O 1.21552 * 120.00507 * 354.10098 * 11 10 9 13 13 C 1.47844 * 120.00019 * 174.10215 * 11 10 9 14 14 C 1.40018 * 120.55645 * 342.42620 * 13 11 10 15 15 C 1.38359 * 118.28863 * 179.97438 * 14 13 11 16 16 C 1.38347 * 119.30233 * 359.97438 * 15 14 13 17 17 N 1.31927 * 121.08190 * 0.02775 * 16 15 14 18 18 C 1.31701 * 121.87808 * 359.67788 * 17 16 15 19 19 C 1.47423 * 108.70375 * 358.93746 * 10 9 7 20 20 C 1.54907 * 104.83345 * 24.12919 * 19 10 9 21 21 H 1.09000 * 111.03409 * 81.08078 * 20 19 10 22 22 N 1.46495 * 111.00538 * 204.91542 * 20 19 10 23 23 C 1.36945 * 119.99901 * 267.19967 * 22 20 19 24 24 H 1.07998 * 120.00004 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99785 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00077 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99941 * 179.72221 * 25 23 22 28 28 H 1.48503 * 109.46934 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47216 * 120.00291 * 27 25 23 30 30 H 1.48502 * 109.46975 * 240.00224 * 27 25 23 31 31 H 1.09004 * 109.46887 * 269.99963 * 1 2 3 32 32 H 1.08997 * 109.47407 * 29.99441 * 1 2 3 33 33 H 1.08997 * 109.47114 * 149.99862 * 1 2 3 34 34 H 1.07997 * 125.64820 * 0.02562 * 3 2 1 35 35 H 1.08010 * 125.98754 * 180.24739 * 5 4 3 36 36 H 1.09000 * 109.88243 * 338.85476 * 9 7 6 37 37 H 1.08996 * 109.88350 * 100.02357 * 9 7 6 38 38 H 1.07998 * 120.85949 * 359.94934 * 14 13 11 39 39 H 1.07997 * 120.35042 * 180.02562 * 15 14 13 40 40 H 1.07999 * 119.46153 * 180.02562 * 16 15 14 41 41 H 1.07997 * 119.72285 * 180.29348 * 18 17 16 42 42 H 1.08999 * 110.36521 * 265.28955 * 19 10 9 43 43 H 1.09002 * 110.36124 * 142.97140 * 19 10 9 44 44 H 0.96997 * 120.00153 * 87.19192 * 22 20 19 45 45 H 0.97002 * 119.99438 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 -0.0006 5 6 3.5460 -0.6505 0.0044 6 6 2.2772 -1.1018 -0.0007 7 6 1.8364 -2.5428 -0.0005 8 1 0.8179 -2.6357 -0.3776 9 6 1.9522 -3.1490 1.4141 10 7 2.4509 -4.5236 1.2603 11 6 2.7061 -5.3836 2.2661 12 8 2.6281 -5.0098 3.4201 13 6 3.0809 -6.7819 1.9659 14 6 2.8271 -7.3315 0.7034 15 6 3.1978 -8.6445 0.4732 16 6 3.8020 -9.3653 1.4879 17 7 4.0287 -8.8211 2.6681 18 6 3.6995 -7.5739 2.9337 19 6 2.6243 -4.8056 -0.1763 20 6 2.8119 -3.4155 -0.8335 21 1 3.8388 -3.0665 -0.7244 22 7 2.4171 -3.4439 -2.2440 23 6 3.3529 -3.6941 -3.2120 24 1 4.3820 -3.8701 -2.9356 25 6 2.9787 -3.7216 -4.5484 26 7 1.7246 -3.5066 -4.8853 27 14 4.2567 -4.0551 -5.8695 28 1 5.5839 -4.2565 -5.2347 29 1 3.8797 -5.2763 -6.6257 30 1 4.3220 -2.8983 -6.7983 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8899 -0.5138 34 1 1.9335 2.1144 0.0004 35 1 4.4369 -1.2612 0.0091 36 1 2.6526 -2.5653 2.0113 37 1 0.9734 -3.1612 1.8934 38 1 2.3538 -6.7459 -0.0708 39 1 3.0181 -9.1017 -0.4885 40 1 4.0927 -10.3902 1.3109 41 1 3.9056 -7.1621 3.9106 42 1 1.7377 -5.2977 -0.5760 43 1 3.5075 -5.4239 -0.3375 44 1 1.4929 -3.2856 -2.4922 45 1 1.4633 -3.5255 -5.8192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070614477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:30 Heat of formation + Delta-G solvation = 103.227110 kcal Electronic energy + Delta-G solvation = -29695.378019 eV Core-core repulsion = 25715.234689 eV Total energy + Delta-G solvation = -3980.143330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.92809 -40.73831 -39.26165 -37.53891 -34.32058 -33.87406 -33.23353 -31.96830 -31.39348 -30.73034 -28.02066 -27.69201 -26.85584 -25.12705 -23.88287 -23.58823 -22.66945 -21.69869 -20.50342 -19.89817 -19.35890 -17.64374 -17.26350 -17.03089 -16.74543 -16.39147 -16.00699 -15.48004 -15.46303 -14.68677 -14.52116 -14.34955 -14.00396 -13.77582 -13.62452 -13.45645 -13.31536 -13.01827 -12.97460 -12.89899 -12.74282 -12.67140 -12.27850 -12.17600 -11.71945 -11.37290 -11.00253 -10.94409 -10.63322 -10.22791 -10.17529 -9.98615 -9.90723 -9.68519 -9.56472 -9.35158 -9.30974 -9.15980 -8.57723 -8.04362 -7.23108 -5.97451 -3.28807 0.58926 1.11203 2.23459 2.81600 2.86897 3.02545 3.32333 3.40220 3.41059 3.44870 3.76588 4.21307 4.39638 4.51304 4.67015 4.70942 4.75181 4.75980 4.83591 4.88778 4.92969 4.96180 5.09343 5.27336 5.31226 5.35892 5.42175 5.46198 5.56291 5.58270 5.58809 5.73903 5.91986 5.93043 5.96859 5.97760 6.04306 6.12535 6.25617 6.47673 6.49668 6.66690 7.00146 7.39476 7.49987 7.54444 7.75981 8.12013 8.18910 8.32036 9.31986 9.81073 10.16049 11.24257 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007445 B = 0.004618 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3759.928209 B = 6061.304952 C = 9056.683866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.458 5.458 3 C 0.172 3.828 4 N -0.494 5.494 5 C -0.014 4.014 6 C 0.006 3.994 7 C -0.038 4.038 8 H 0.090 0.910 9 C 0.125 3.875 10 N -0.606 5.606 11 C 0.577 3.423 12 O -0.543 6.543 13 C -0.181 4.181 14 C -0.055 4.055 15 C -0.178 4.178 16 C 0.116 3.884 17 N -0.492 5.492 18 C 0.155 3.845 19 C 0.062 3.938 20 C 0.186 3.814 21 H 0.079 0.921 22 N -0.704 5.704 23 C -0.249 4.249 24 H 0.075 0.925 25 C -0.004 4.004 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.200 0.800 35 H 0.165 0.835 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.162 0.838 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.386 0.614 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 -2.109 10.867 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.142 5.142 3 C -0.110 4.110 4 N -0.211 5.211 5 C -0.161 4.161 6 C -0.109 4.109 7 C -0.059 4.059 8 H 0.108 0.892 9 C 0.001 3.999 10 N -0.339 5.339 11 C 0.366 3.634 12 O -0.422 6.422 13 C -0.186 4.186 14 C -0.081 4.081 15 C -0.198 4.198 16 C -0.041 4.041 17 N -0.201 5.201 18 C -0.004 4.004 19 C -0.064 4.064 20 C 0.073 3.927 21 H 0.096 0.904 22 N -0.343 5.343 23 C -0.379 4.379 24 H 0.093 0.907 25 C -0.201 4.201 26 N -0.576 5.576 27 Si 0.737 3.263 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.217 0.783 35 H 0.183 0.817 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.179 0.821 39 H 0.161 0.839 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.220 0.780 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.599 -1.941 12.022 12.452 hybrid contribution -0.966 -0.126 -1.825 2.069 sum -3.565 -2.067 10.197 10.998 Atomic orbital electron populations 1.22015 0.77045 1.04920 1.03131 1.45207 1.07361 1.06738 1.54852 1.24790 0.85793 0.93190 1.07199 1.70239 1.19351 1.12127 1.19429 1.21934 0.95776 0.90777 1.07649 1.20696 0.91095 0.88468 1.10596 1.20925 1.01593 0.88243 0.95156 0.89186 1.21905 0.99522 0.81983 0.96445 1.48310 1.64538 1.13708 1.07335 1.17731 0.77336 0.84264 0.84103 1.90766 1.53389 1.78322 1.19719 1.20917 1.05602 0.95647 0.96451 1.22750 0.93785 0.95453 0.96069 1.22210 1.01045 0.95121 1.01443 1.23020 0.92696 1.00065 0.88289 1.67801 1.18509 1.12085 1.21672 1.22956 0.90384 0.88386 0.98636 1.23941 1.01485 1.02655 0.78290 1.21359 0.96747 0.89371 0.85272 0.90356 1.42247 1.09705 1.84014 0.98339 1.19263 0.90743 1.41477 0.86443 0.90747 1.24739 0.96281 1.01837 0.97196 1.69658 1.15402 1.55555 1.16943 0.86138 0.80650 0.77494 0.82017 1.20309 1.21736 1.21709 0.90780 0.89556 0.89459 0.78294 0.81730 0.90707 0.91528 0.82100 0.83934 0.82393 0.81697 0.90494 0.90054 0.77955 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 11.00 59.85 0.66 1.30 16 2 N -0.46 -6.09 3.15 -121.37 -0.38 -6.47 16 3 C 0.17 2.38 12.56 -90.37 -1.14 1.25 16 4 N -0.49 -8.50 11.25 -14.66 -0.16 -8.66 16 5 C -0.01 -0.23 11.02 -17.81 -0.20 -0.43 16 6 C 0.01 0.09 5.80 -81.60 -0.47 -0.38 16 7 C -0.04 -0.54 2.89 -89.94 -0.26 -0.80 16 8 H 0.09 1.25 6.97 -51.93 -0.36 0.89 16 9 C 0.12 1.71 6.46 -3.06 -0.02 1.69 16 10 N -0.61 -8.71 3.33 -171.63 -0.57 -9.28 16 11 C 0.58 8.86 7.72 -12.33 -0.10 8.77 16 12 O -0.54 -9.69 16.85 5.32 0.09 -9.60 16 13 C -0.18 -2.47 5.79 -104.82 -0.61 -3.07 16 14 C -0.05 -0.67 8.24 -38.87 -0.32 -0.99 16 15 C -0.18 -1.86 10.10 -39.50 -0.40 -2.26 16 16 C 0.12 1.22 11.17 -17.47 -0.20 1.02 16 17 N -0.49 -6.30 10.35 -12.91 -0.13 -6.43 16 18 C 0.15 2.05 10.76 -17.13 -0.18 1.86 16 19 C 0.06 0.91 4.63 -2.53 -0.01 0.89 16 20 C 0.19 3.13 3.06 -65.79 -0.20 2.93 16 21 H 0.08 1.40 6.55 -51.93 -0.34 1.06 16 22 N -0.70 -15.04 5.24 -51.36 -0.27 -15.31 16 23 C -0.25 -6.13 9.96 -15.06 -0.15 -6.28 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 26 N -0.93 -25.65 13.06 55.49 0.72 -24.93 16 27 Si 0.91 20.97 29.55 -169.99 -5.02 15.94 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.81 7.13 -51.93 -0.37 0.44 16 34 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.17 2.72 7.16 -52.48 -0.38 2.34 16 36 H 0.07 1.09 7.81 -51.93 -0.41 0.69 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.16 1.93 4.11 -52.49 -0.22 1.71 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.17 2.06 7.77 -52.49 -0.41 1.65 16 42 H 0.08 1.11 7.01 -51.93 -0.36 0.75 16 43 H 0.08 1.18 6.48 -51.93 -0.34 0.85 16 44 H 0.39 8.85 7.76 -40.82 -0.32 8.53 16 45 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -32.54 374.25 -9.35 -41.90 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.58 Total: 11.89 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -3.69 Total: 5.32 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -0.80 Total: -71.08 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.54 -9.35 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070614477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.122 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds