Wall clock time and date at job start Sat Apr 11 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35049 * 126.39767 * 2 1 4 4 N 1.30497 * 108.70065 * 180.02562 * 3 2 1 5 5 C 1.34132 * 109.25267 * 359.75725 * 4 3 2 6 6 C 1.34665 * 108.02325 * 0.39892 * 5 4 3 7 7 C 1.50700 * 126.58942 * 179.87729 * 6 5 4 8 8 H 1.09007 * 110.77486 * 201.44254 * 7 6 5 9 9 C 1.54329 * 110.71971 * 78.21084 * 7 6 5 10 10 N 1.47029 * 107.26564 * 219.44267 * 9 7 6 11 11 C 1.34774 * 125.64413 * 178.98648 * 10 9 7 12 12 O 1.21552 * 120.00507 * 354.10098 * 11 10 9 13 13 C 1.47844 * 120.00019 * 174.10215 * 11 10 9 14 14 C 1.40018 * 120.55645 * 342.42620 * 13 11 10 15 15 C 1.38359 * 118.28863 * 179.97438 * 14 13 11 16 16 C 1.38347 * 119.30233 * 359.97438 * 15 14 13 17 17 N 1.31927 * 121.08190 * 0.02775 * 16 15 14 18 18 C 1.31701 * 121.87808 * 359.67788 * 17 16 15 19 19 C 1.47423 * 108.70375 * 358.93746 * 10 9 7 20 20 C 1.54907 * 104.83345 * 24.12919 * 19 10 9 21 21 H 1.09000 * 111.03409 * 81.08078 * 20 19 10 22 22 N 1.46495 * 111.00538 * 204.91542 * 20 19 10 23 23 C 1.36945 * 119.99901 * 267.19967 * 22 20 19 24 24 H 1.07998 * 120.00004 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99785 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00077 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99941 * 179.72221 * 25 23 22 28 28 H 1.48503 * 109.46934 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47216 * 120.00291 * 27 25 23 30 30 H 1.48502 * 109.46975 * 240.00224 * 27 25 23 31 31 H 1.09004 * 109.46887 * 269.99963 * 1 2 3 32 32 H 1.08997 * 109.47407 * 29.99441 * 1 2 3 33 33 H 1.08997 * 109.47114 * 149.99862 * 1 2 3 34 34 H 1.07997 * 125.64820 * 0.02562 * 3 2 1 35 35 H 1.08010 * 125.98754 * 180.24739 * 5 4 3 36 36 H 1.09000 * 109.88243 * 338.85476 * 9 7 6 37 37 H 1.08996 * 109.88350 * 100.02357 * 9 7 6 38 38 H 1.07998 * 120.85949 * 359.94934 * 14 13 11 39 39 H 1.07997 * 120.35042 * 180.02562 * 15 14 13 40 40 H 1.07999 * 119.46153 * 180.02562 * 16 15 14 41 41 H 1.07997 * 119.72285 * 180.29348 * 18 17 16 42 42 H 1.08999 * 110.36521 * 265.28955 * 19 10 9 43 43 H 1.09002 * 110.36124 * 142.97140 * 19 10 9 44 44 H 0.96997 * 120.00153 * 87.19192 * 22 20 19 45 45 H 0.97002 * 119.99438 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 -0.0006 5 6 3.5460 -0.6505 0.0044 6 6 2.2772 -1.1018 -0.0007 7 6 1.8364 -2.5428 -0.0005 8 1 0.8179 -2.6357 -0.3776 9 6 1.9522 -3.1490 1.4141 10 7 2.4509 -4.5236 1.2603 11 6 2.7061 -5.3836 2.2661 12 8 2.6281 -5.0098 3.4201 13 6 3.0809 -6.7819 1.9659 14 6 2.8271 -7.3315 0.7034 15 6 3.1978 -8.6445 0.4732 16 6 3.8020 -9.3653 1.4879 17 7 4.0287 -8.8211 2.6681 18 6 3.6995 -7.5739 2.9337 19 6 2.6243 -4.8056 -0.1763 20 6 2.8119 -3.4155 -0.8335 21 1 3.8388 -3.0665 -0.7244 22 7 2.4171 -3.4439 -2.2440 23 6 3.3529 -3.6941 -3.2120 24 1 4.3820 -3.8701 -2.9356 25 6 2.9787 -3.7216 -4.5484 26 7 1.7246 -3.5066 -4.8853 27 14 4.2567 -4.0551 -5.8695 28 1 5.5839 -4.2565 -5.2347 29 1 3.8797 -5.2763 -6.6257 30 1 4.3220 -2.8983 -6.7983 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8899 -0.5138 34 1 1.9335 2.1144 0.0004 35 1 4.4369 -1.2612 0.0091 36 1 2.6526 -2.5653 2.0113 37 1 0.9734 -3.1612 1.8934 38 1 2.3538 -6.7459 -0.0708 39 1 3.0181 -9.1017 -0.4885 40 1 4.0927 -10.3902 1.3109 41 1 3.9056 -7.1621 3.9106 42 1 1.7377 -5.2977 -0.5760 43 1 3.5075 -5.4239 -0.3375 44 1 1.4929 -3.2856 -2.4922 45 1 1.4633 -3.5255 -5.8192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070614477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:29 Heat of formation + Delta-G solvation = 83.079705 kcal Electronic energy + Delta-G solvation = -29696.251676 eV Core-core repulsion = 25715.234689 eV Total energy + Delta-G solvation = -3981.016987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.06231 -41.81121 -40.35502 -38.84220 -35.95570 -34.92087 -34.39292 -33.23528 -32.48968 -32.13012 -29.40812 -28.92355 -27.73898 -26.40046 -25.40787 -24.60766 -23.79995 -22.95704 -21.71838 -21.02358 -20.59861 -19.26005 -18.44810 -18.00032 -17.93222 -17.50589 -17.17379 -16.73583 -16.47898 -16.21690 -15.72306 -15.46590 -15.16252 -15.13026 -14.88071 -14.63811 -14.52390 -14.32529 -14.08531 -14.04738 -13.78172 -13.60887 -13.42985 -13.20140 -13.07938 -12.90829 -12.64455 -12.50689 -12.12390 -11.85323 -11.80562 -11.37545 -11.05972 -10.91918 -10.88483 -10.52318 -10.41612 -10.26316 -9.79853 -9.28877 -9.00039 -7.94842 -5.23212 -0.37559 0.18840 1.10419 1.48447 1.52284 1.58991 1.66943 1.75451 1.99744 2.24182 2.56276 2.80595 3.18362 3.33624 3.47501 3.55300 3.65565 3.69462 3.83723 3.86413 3.91973 3.99166 4.04006 4.09003 4.17783 4.25713 4.40246 4.43717 4.47449 4.49897 4.59883 4.70616 4.73149 4.76190 4.81498 4.91076 4.97265 5.07130 5.08968 5.19534 5.46343 5.56607 5.59957 5.79778 6.25393 6.29855 6.38105 6.84061 6.91866 7.16463 7.35701 8.02168 8.28067 9.27601 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007445 B = 0.004618 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3759.928209 B = 6061.304952 C = 9056.683866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.457 5.457 3 C 0.179 3.821 4 N -0.536 5.536 5 C -0.044 4.044 6 C -0.001 4.001 7 C -0.021 4.021 8 H 0.100 0.900 9 C 0.130 3.870 10 N -0.603 5.603 11 C 0.577 3.423 12 O -0.573 6.573 13 C -0.197 4.197 14 C -0.059 4.059 15 C -0.172 4.172 16 C 0.120 3.880 17 N -0.509 5.509 18 C 0.147 3.853 19 C 0.078 3.922 20 C 0.182 3.818 21 H 0.066 0.934 22 N -0.710 5.710 23 C -0.235 4.235 24 H 0.076 0.924 25 C -0.059 4.059 26 N -0.961 5.961 27 Si 0.958 3.042 28 H -0.269 1.269 29 H -0.291 1.291 30 H -0.302 1.302 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.155 0.845 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.162 0.838 39 H 0.172 0.828 40 H 0.194 0.806 41 H 0.163 0.837 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.378 0.622 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -2.902 11.018 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.139 5.139 3 C -0.103 4.103 4 N -0.254 5.254 5 C -0.191 4.191 6 C -0.117 4.117 7 C -0.042 4.042 8 H 0.118 0.882 9 C 0.007 3.993 10 N -0.335 5.335 11 C 0.367 3.633 12 O -0.454 6.454 13 C -0.202 4.202 14 C -0.085 4.085 15 C -0.191 4.191 16 C -0.036 4.036 17 N -0.217 5.217 18 C -0.011 4.011 19 C -0.047 4.047 20 C 0.070 3.930 21 H 0.084 0.916 22 N -0.349 5.349 23 C -0.367 4.367 24 H 0.094 0.906 25 C -0.252 4.252 26 N -0.611 5.611 27 Si 0.788 3.212 28 H -0.193 1.193 29 H -0.218 1.218 30 H -0.230 1.230 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.257 0.743 35 H 0.172 0.828 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.179 0.821 39 H 0.189 0.811 40 H 0.211 0.789 41 H 0.180 0.820 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.212 0.788 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.322 -2.744 12.216 12.954 hybrid contribution -0.724 0.131 -1.791 1.936 sum -4.046 -2.613 10.426 11.484 Atomic orbital electron populations 1.22361 0.74314 1.06033 1.05040 1.45453 1.08983 1.05804 1.53681 1.25579 0.85021 0.94815 1.04875 1.70178 1.21626 1.12212 1.21418 1.21971 0.96409 0.91262 1.09442 1.20718 0.91056 0.89331 1.10577 1.20743 1.01136 0.87529 0.94803 0.88196 1.21877 1.00045 0.81478 0.95869 1.48277 1.64308 1.13855 1.07053 1.18017 0.76667 0.84970 0.83645 1.90743 1.54847 1.79037 1.20800 1.20801 1.07141 0.94757 0.97490 1.22805 0.93942 0.96433 0.95332 1.22541 0.99753 0.94208 1.02606 1.23649 0.91243 1.01430 0.87320 1.67850 1.19100 1.11765 1.23024 1.22969 0.90697 0.88814 0.98657 1.23638 1.02051 1.00821 0.78175 1.21425 0.96766 0.91160 0.83664 0.91643 1.42245 1.08753 1.84245 0.99636 1.19536 0.91258 1.38818 0.87070 0.90625 1.25320 0.97602 1.03364 0.98956 1.69770 1.16778 1.57968 1.16602 0.85308 0.79393 0.76621 0.79845 1.19309 1.21844 1.22956 0.88445 0.87109 0.89773 0.74314 0.82798 0.91683 0.89931 0.82116 0.81083 0.78878 0.81963 0.89671 0.89772 0.78841 0.94077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.97 11.00 127.77 1.41 2.37 16 2 N -0.46 -11.40 3.15 -537.89 -1.70 -13.10 16 3 C 0.18 4.69 12.56 180.26 2.26 6.96 16 4 N -0.54 -18.48 11.25 -200.30 -2.25 -20.73 16 5 C -0.04 -1.52 11.02 83.52 0.92 -0.60 16 6 C 0.00 -0.03 5.80 40.95 0.24 0.21 16 7 C -0.02 -0.59 2.89 -10.35 -0.03 -0.62 16 8 H 0.10 2.64 6.97 -2.38 -0.02 2.63 16 9 C 0.13 3.49 6.46 86.73 0.56 4.05 16 10 N -0.60 -16.98 3.33 -815.18 -2.71 -19.69 16 11 C 0.58 17.60 7.72 86.79 0.67 18.27 16 12 O -0.57 -20.61 16.85 -3.88 -0.07 -20.67 16 13 C -0.20 -5.23 5.79 -19.99 -0.12 -5.35 16 14 C -0.06 -1.35 8.24 22.73 0.19 -1.16 16 15 C -0.17 -3.08 10.10 22.32 0.23 -2.85 16 16 C 0.12 2.18 11.17 84.70 0.95 3.13 16 17 N -0.51 -12.24 10.35 -194.76 -2.01 -14.26 16 18 C 0.15 3.82 10.76 85.02 0.91 4.73 16 19 C 0.08 2.22 4.63 86.85 0.40 2.63 16 20 C 0.18 6.07 3.06 46.38 0.14 6.21 16 21 H 0.07 2.38 6.55 -2.39 -0.02 2.37 16 22 N -0.71 -30.19 5.24 -316.40 -1.66 -31.85 16 23 C -0.24 -11.54 9.96 84.03 0.84 -10.70 16 24 H 0.08 3.64 7.83 -2.91 -0.02 3.61 16 25 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 26 N -0.96 -53.45 13.06 21.65 0.28 -53.17 16 27 Si 0.96 43.12 29.55 68.60 2.03 45.15 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 29 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 30 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 31 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.37 7.13 -2.39 -0.02 1.36 16 34 H 0.24 3.89 8.06 -2.91 -0.02 3.86 16 35 H 0.15 5.42 7.16 -2.91 -0.02 5.40 16 36 H 0.06 1.90 7.81 -2.39 -0.02 1.88 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.16 3.58 4.11 -2.91 -0.01 3.57 16 39 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 41 H 0.16 4.14 7.77 -2.91 -0.02 4.12 16 42 H 0.09 2.34 7.01 -2.39 -0.02 2.32 16 43 H 0.08 2.37 6.48 -2.39 -0.02 2.35 16 44 H 0.38 17.29 7.76 -92.71 -0.72 16.57 16 45 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -71.15 374.25 2.27 -68.89 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.32 Total: 34.78 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 10.03 Total: 24.65 kcal Atomic # 7 Polarization: -142.74 SS G_CDS: -10.05 Total: -152.79 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.07 Total: -20.67 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -71.15 2.27 -68.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070614477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.966 kcal (2) G-P(sol) polarization free energy of solvation -71.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds