Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35988 * 126.35667 * 2 1 4 4 N 1.30277 * 110.05680 * 179.97438 * 3 2 1 5 5 C 1.34650 * 109.67129 * 359.97438 * 4 3 2 6 6 C 1.37940 * 126.35746 * 179.97438 * 2 1 3 7 7 N 1.32111 * 133.81427 * 0.02562 * 6 2 1 8 8 C 1.31726 * 121.95149 * 179.97438 * 7 6 2 9 9 C 1.38342 * 121.54586 * 0.04378 * 8 7 6 10 10 C 1.39639 * 119.37467 * 359.97438 * 9 8 7 11 11 C 1.47764 * 121.07038 * 180.02562 * 10 9 8 12 12 O 1.21566 * 119.99853 * 186.33197 * 11 10 9 13 13 N 1.34771 * 120.00487 * 6.32851 * 11 10 9 14 14 C 1.47399 * 135.85170 * 5.13177 * 13 11 10 15 15 C 1.52071 * 87.41071 * 154.38574 * 14 13 11 16 16 C 1.47389 * 135.85681 * 185.49851 * 13 11 10 17 17 C 1.53515 * 117.21205 * 267.27921 * 15 14 13 18 18 C 1.54634 * 102.70431 * 262.92940 * 17 15 14 19 19 N 1.47151 * 107.37458 * 339.38753 * 18 17 15 20 20 C 1.36935 * 125.57898 * 179.04427 * 19 18 17 21 21 H 1.08001 * 120.00015 * 180.02562 * 20 19 18 22 22 C 1.38819 * 119.99856 * 0.02562 * 20 19 18 23 23 N 1.31612 * 119.99883 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99812 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.47124 * 89.99911 * 24 22 20 26 26 H 1.48501 * 109.47126 * 209.99612 * 24 22 20 27 27 H 1.48501 * 109.47139 * 330.00144 * 24 22 20 28 28 C 1.47753 * 108.84094 * 359.08631 * 19 18 17 29 29 H 1.08999 * 109.47111 * 90.02370 * 1 2 3 30 30 H 1.09001 * 109.47259 * 210.03225 * 1 2 3 31 31 H 1.09006 * 109.47404 * 330.02020 * 1 2 3 32 32 H 1.08004 * 124.97368 * 359.94059 * 3 2 1 33 33 H 1.07998 * 119.22922 * 180.02562 * 8 7 6 34 34 H 1.07999 * 120.30919 * 179.97438 * 9 8 7 35 35 H 1.08996 * 113.54313 * 268.99675 * 14 13 11 36 36 H 1.08997 * 113.54204 * 39.67510 * 14 13 11 37 37 H 1.09001 * 113.54622 * 320.32427 * 16 13 11 38 38 H 1.08998 * 113.54442 * 90.93286 * 16 13 11 39 39 H 1.08998 * 110.76502 * 21.23137 * 17 15 14 40 40 H 1.08997 * 110.76672 * 144.62681 * 17 15 14 41 41 H 1.08999 * 109.86371 * 98.83311 * 18 17 15 42 42 H 1.08994 * 109.86614 * 219.93833 * 18 17 15 43 43 H 0.97001 * 119.99969 * 179.97438 * 23 22 20 44 44 H 1.09007 * 110.40237 * 263.50655 * 28 19 18 45 45 H 1.08996 * 110.40740 * 141.08048 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0952 0.0000 4 7 3.5215 0.7295 0.0005 5 6 3.6007 -0.6146 0.0015 6 6 2.2827 -1.1109 0.0005 7 7 2.0572 -2.4126 0.0007 8 6 3.0395 -3.2903 0.0007 9 6 4.3647 -2.8933 0.0014 10 6 4.6717 -1.5311 0.0016 11 6 6.0741 -1.0654 0.0019 12 8 6.3211 0.1192 0.1182 13 7 7.0793 -1.9539 -0.1268 14 6 7.1847 -3.4029 -0.3756 15 6 8.5622 -3.1323 -0.9604 16 6 8.5512 -1.9006 -0.0735 17 6 8.6483 -2.8995 -2.4753 18 6 9.0485 -4.2937 -3.0114 19 7 9.6409 -5.0417 -1.8912 20 6 10.1066 -6.3281 -1.9499 21 1 10.5253 -6.7916 -1.0689 22 6 10.0405 -7.0365 -3.1420 23 7 9.5307 -6.4714 -4.2158 24 14 10.6751 -8.7915 -3.2219 25 1 9.5742 -9.7315 -2.8905 26 1 11.1732 -9.0759 -4.5917 27 1 11.7822 -8.9624 -2.2471 28 6 9.6501 -4.1780 -0.6925 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 1.9254 2.1184 -0.0009 33 1 2.8048 -4.3444 0.0004 34 1 5.1544 -3.6301 0.0018 35 1 7.2083 -4.0005 0.5357 36 1 6.4650 -3.7728 -1.1057 37 1 8.9726 -1.0162 -0.5514 38 1 8.9575 -2.0763 0.9226 39 1 7.6811 -2.5949 -2.8751 40 1 9.4146 -2.1608 -2.7099 41 1 8.1657 -4.8162 -3.3800 42 1 9.7793 -4.1865 -3.8129 43 1 9.4848 -6.9663 -5.0488 44 1 10.6211 -3.6957 -0.5791 45 1 9.4075 -4.7595 0.1969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072975106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = 147.232950 kcal Electronic energy + Delta-G solvation = -29319.961159 eV Core-core repulsion = 25341.726066 eV Total energy + Delta-G solvation = -3978.235094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.64193 -40.72757 -38.75538 -37.90874 -35.67580 -34.71462 -32.63463 -31.96729 -29.98330 -29.47983 -28.67440 -27.52084 -26.15108 -26.05326 -24.60296 -23.56358 -23.10016 -21.69604 -20.29560 -19.38789 -18.51796 -18.16544 -17.68089 -16.85549 -16.75461 -16.43987 -15.95769 -15.48371 -15.15980 -14.75359 -14.70204 -14.35801 -14.18661 -14.03191 -13.80232 -13.40313 -13.27795 -12.98246 -12.81640 -12.65190 -12.29860 -12.26587 -11.92310 -11.83633 -11.08611 -10.96759 -10.94476 -10.92833 -10.64587 -10.44917 -10.22513 -10.11772 -9.91029 -9.81150 -9.63997 -9.23585 -8.97490 -8.75886 -8.61429 -8.49361 -6.85532 -5.72812 -3.06580 0.22049 0.94575 2.01298 2.53110 2.81437 2.93832 3.38913 3.44421 3.46324 3.75173 3.79043 4.01309 4.19094 4.36414 4.46451 4.58862 4.61828 4.67732 4.73825 4.90423 4.96131 5.02929 5.16554 5.28205 5.45366 5.48826 5.59810 5.61116 5.65323 5.66575 5.75306 5.80891 5.84205 6.01225 6.17317 6.23981 6.32624 6.45696 6.53002 6.61405 6.65578 6.70163 7.53733 7.54406 7.56904 7.60830 7.80453 7.82011 8.23029 8.26076 9.19871 9.80008 10.45578 11.38669 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002585 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.044375 B =10830.644832 C =11699.616407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.487 5.487 3 C 0.270 3.730 4 N -0.464 5.464 5 C 0.052 3.948 6 C 0.230 3.770 7 N -0.468 5.468 8 C 0.133 3.867 9 C -0.155 4.155 10 C -0.027 4.027 11 C 0.581 3.419 12 O -0.512 6.512 13 N -0.639 5.639 14 C 0.110 3.890 15 C -0.104 4.104 16 C 0.122 3.878 17 C -0.118 4.118 18 C 0.180 3.820 19 N -0.605 5.605 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.154 3.846 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.223 0.777 33 H 0.174 0.826 34 H 0.160 0.840 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.027 0.973 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.342 11.310 9.604 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.180 5.180 3 C -0.016 4.016 4 N -0.181 5.181 5 C -0.072 4.072 6 C -0.006 4.006 7 N -0.182 5.182 8 C -0.033 4.033 9 C -0.178 4.178 10 C -0.040 4.040 11 C 0.370 3.630 12 O -0.387 6.387 13 N -0.374 5.374 14 C -0.012 4.012 15 C -0.105 4.105 16 C 0.000 4.000 17 C -0.156 4.156 18 C 0.055 3.945 19 N -0.331 5.331 20 C -0.356 4.356 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.027 3.973 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.240 0.760 33 H 0.191 0.809 34 H 0.177 0.823 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.688 12.275 9.516 23.539 hybrid contribution 0.236 -1.195 -0.137 1.226 sum -17.452 11.080 9.379 22.700 Atomic orbital electron populations 1.22018 0.75223 1.04870 1.03788 1.45105 1.07709 1.04564 1.60592 1.25703 0.84827 0.93234 0.97835 1.70343 1.17434 1.10635 1.19658 1.19185 0.91938 0.91303 1.04783 1.18911 0.88852 0.88083 1.04713 1.66164 1.38228 0.99428 1.14343 1.22572 0.87081 0.98525 0.95103 1.22743 0.99380 0.95219 1.00417 1.19593 0.92205 0.92037 1.00167 1.17429 0.83173 0.84948 0.77496 1.90834 1.83796 1.15266 1.48810 1.49674 1.07108 1.09949 1.70698 1.23085 0.97222 0.80851 1.00034 1.22187 0.95739 0.95679 0.96938 1.22789 0.78730 0.98686 0.99810 1.22475 1.00745 1.00642 0.91717 1.21226 0.97653 0.85791 0.89834 1.44544 1.72206 1.11239 1.05135 1.19039 1.33422 0.87177 0.95974 0.90384 1.24796 1.01286 0.98520 0.95804 1.69958 1.50339 1.36086 1.00494 0.86136 0.78386 0.84432 0.76884 1.21628 1.21748 1.20718 1.21142 0.94123 0.90440 0.91614 0.90520 0.89255 0.89184 0.76029 0.80866 0.82308 0.89072 0.89550 0.90250 0.89561 0.92095 0.91720 0.93493 0.93806 0.93749 0.95499 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.20 59.84 0.67 1.08 16 2 N -0.49 -4.72 3.20 -124.98 -0.40 -5.12 16 3 C 0.27 2.64 12.50 -89.69 -1.12 1.52 16 4 N -0.46 -7.01 10.65 -11.88 -0.13 -7.13 16 5 C 0.05 0.80 6.85 -84.62 -0.58 0.22 16 6 C 0.23 3.04 8.02 -155.65 -1.25 1.80 16 7 N -0.47 -5.88 10.35 -12.30 -0.13 -6.01 16 8 C 0.13 1.45 11.14 -17.56 -0.20 1.26 16 9 C -0.16 -1.88 9.23 -39.02 -0.36 -2.24 16 10 C -0.03 -0.42 5.93 -104.45 -0.62 -1.04 16 11 C 0.58 10.00 8.02 -12.37 -0.10 9.90 16 12 O -0.51 -10.54 16.99 5.31 0.09 -10.45 16 13 N -0.64 -9.67 3.68 -186.86 -0.69 -10.36 16 14 C 0.11 1.53 5.49 -7.33 -0.04 1.48 16 15 C -0.10 -1.64 1.06 -155.22 -0.16 -1.81 16 16 C 0.12 1.74 8.03 -7.47 -0.06 1.68 16 17 C -0.12 -2.12 6.40 -25.61 -0.16 -2.28 16 18 C 0.18 4.14 5.39 -2.83 -0.02 4.12 16 19 N -0.60 -14.40 3.41 -170.53 -0.58 -14.98 16 20 C -0.23 -6.02 10.28 -15.06 -0.15 -6.18 16 21 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -26.25 10.30 55.49 0.57 -25.67 16 24 Si 0.91 21.43 29.55 -169.99 -5.02 16.40 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.15 2.84 6.70 -3.22 -0.02 2.82 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.22 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.16 1.68 4.33 -52.49 -0.23 1.46 16 35 H 0.09 1.08 8.05 -51.93 -0.42 0.67 16 36 H 0.09 1.19 6.83 -51.93 -0.35 0.84 16 37 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 1.20 7.38 -51.93 -0.38 0.81 16 42 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 45 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -36.82 370.59 -10.93 -47.75 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.96 Total: -2.03 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -4.27 Total: 12.03 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -1.35 Total: -69.28 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.82 -10.93 -47.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072975106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.979 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds