Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36261 * 126.29353 * 2 1 4 4 N 1.30138 * 110.04768 * 179.50913 * 3 2 1 5 5 C 1.35705 * 109.49842 * 0.59832 * 4 3 2 6 6 C 1.39475 * 134.43037 * 179.31572 * 5 4 3 7 7 N 1.31767 * 120.63234 * 180.02562 * 6 5 4 8 8 C 1.31939 * 122.59911 * 0.02562 * 7 6 5 9 9 C 1.39373 * 121.02130 * 359.97438 * 8 7 6 10 10 C 1.47533 * 120.75783 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00087 * 126.48953 * 10 9 8 12 12 N 1.34775 * 120.00221 * 306.49300 * 10 9 8 13 13 C 1.47355 * 125.52873 * 355.34641 * 12 10 9 14 14 C 1.54939 * 105.10201 * 156.51639 * 13 12 10 15 15 C 1.54799 * 101.49942 * 36.73267 * 14 13 12 16 16 H 1.09009 * 113.15180 * 85.61529 * 15 14 13 17 17 C 1.53262 * 109.75090 * 212.29397 * 15 14 13 18 18 N 1.46581 * 108.16070 * 95.76253 * 17 15 14 19 19 C 1.36935 * 125.30887 * 177.88977 * 18 17 15 20 20 H 1.08004 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00350 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99618 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00365 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47113 * 59.99315 * 23 21 19 25 25 H 1.48497 * 109.47328 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.46912 * 299.99681 * 23 21 19 27 27 C 1.46611 * 109.38840 * 357.89205 * 18 17 15 28 28 C 1.47214 * 125.53073 * 174.31026 * 12 10 9 29 29 H 1.08993 * 112.28676 * 56.24368 * 28 12 10 30 30 C 1.36917 * 126.30319 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47094 * 274.39564 * 1 2 3 32 32 H 1.08998 * 109.47414 * 34.40100 * 1 2 3 33 33 H 1.09004 * 109.46968 * 154.40488 * 1 2 3 34 34 H 1.08002 * 124.97595 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.68251 * 0.03440 * 6 5 4 36 36 H 1.07999 * 119.49385 * 179.97438 * 8 7 6 37 37 H 1.09002 * 110.68177 * 37.37493 * 13 12 10 38 38 H 1.09001 * 109.83399 * 275.22260 * 13 12 10 39 39 H 1.08998 * 111.01615 * 278.68131 * 14 13 12 40 40 H 1.09001 * 111.02212 * 154.78854 * 14 13 12 41 41 H 1.08994 * 109.74082 * 215.45314 * 17 15 14 42 42 H 1.09004 * 109.73374 * 336.07627 * 17 15 14 43 43 H 0.96998 * 120.00276 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.91188 * 258.45332 * 27 18 17 45 45 H 1.08995 * 109.91601 * 137.16555 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2715 1.0983 0.0000 4 7 3.5209 0.7342 0.0105 5 6 3.5980 -0.6206 0.0045 6 6 4.6478 -1.5389 -0.0016 7 7 4.4068 -2.8343 -0.0072 8 6 3.1839 -3.3298 -0.0077 9 6 2.0697 -2.4925 -0.0019 10 6 0.7049 -3.0528 -0.0031 11 8 -0.0942 -2.7090 0.8463 12 7 0.3440 -3.9459 -0.9457 13 6 1.1768 -4.3738 -2.0836 14 6 0.6257 -5.7647 -2.4866 15 6 -0.8928 -5.5744 -2.2537 16 1 -1.4058 -5.1348 -3.1092 17 6 -1.5190 -6.9010 -1.8098 18 7 -1.5867 -6.9069 -0.3456 19 6 -2.1239 -7.9088 0.4178 20 1 -2.5430 -8.7838 -0.0568 21 6 -2.1307 -7.7995 1.8016 22 7 -1.6203 -6.7330 2.3799 23 14 -2.8629 -9.1665 2.8430 24 1 -2.1286 -10.4314 2.5866 25 1 -2.7485 -8.8095 4.2799 26 1 -4.2944 -9.3449 2.4902 27 6 -0.9896 -5.6729 0.1742 28 6 -0.9379 -4.6682 -0.9937 29 1 -1.7932 -3.9926 -0.9977 30 6 2.2756 -1.1034 -0.0005 31 1 -0.3634 0.0788 1.0247 32 1 -0.3634 0.8479 -0.5806 33 1 -0.3633 -0.9269 -0.4440 34 1 1.9247 2.1211 0.0004 35 1 5.6681 -1.1847 -0.0017 36 1 3.0442 -4.4006 -0.0128 37 1 2.2228 -4.4518 -1.7872 38 1 1.0670 -3.6692 -2.9079 39 1 1.0255 -6.5459 -1.8401 40 1 0.8366 -5.9803 -3.5341 41 1 -2.5226 -6.9915 -2.2251 42 1 -0.9027 -7.7319 -2.1532 43 1 -1.6247 -6.6567 3.3469 44 1 0.0186 -5.8726 0.5371 45 1 -1.6050 -5.2737 0.9804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075904014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = 103.079307 kcal Electronic energy + Delta-G solvation = -30530.345760 eV Core-core repulsion = 26550.196021 eV Total energy + Delta-G solvation = -3980.149739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.64165 -40.24859 -38.67701 -37.84216 -35.03777 -34.40434 -32.52473 -31.64595 -30.72901 -30.17843 -28.65853 -27.44989 -26.83526 -24.85184 -24.43105 -23.18952 -22.81506 -21.63749 -20.43017 -19.71838 -18.87862 -18.02050 -17.71817 -17.17161 -16.77709 -16.22801 -15.84511 -15.61177 -15.17958 -14.87296 -14.52129 -14.23158 -14.09386 -13.84881 -13.68951 -13.41832 -13.19396 -12.87603 -12.71648 -12.59907 -12.25549 -12.19005 -11.98970 -11.57027 -11.29672 -11.09524 -10.81859 -10.77054 -10.57092 -10.49021 -10.28716 -10.24337 -10.09711 -9.82696 -9.74747 -9.43710 -9.12012 -8.62805 -8.50497 -8.28950 -6.85976 -5.66140 -3.08228 0.37419 1.22506 2.29209 2.37540 2.85601 3.10101 3.40413 3.44501 3.46824 3.69072 3.89414 4.14197 4.30818 4.47618 4.49760 4.52709 4.73026 4.79750 4.84765 4.97959 5.03284 5.14928 5.25643 5.40552 5.42894 5.48782 5.53299 5.54369 5.63479 5.74030 5.83685 5.88180 5.97015 6.06576 6.11926 6.26540 6.29211 6.45756 6.49967 6.61452 6.73690 6.81236 7.41284 7.44060 7.59783 7.74306 7.81570 7.88995 8.27531 8.36133 9.21122 9.82112 10.43579 11.38485 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.003352 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.326052 B = 8351.302615 C = 8689.158503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.479 5.479 3 C 0.260 3.740 4 N -0.479 5.479 5 C -0.014 4.014 6 C 0.187 3.813 7 N -0.484 5.484 8 C 0.134 3.866 9 C -0.156 4.156 10 C 0.575 3.425 11 O -0.520 6.520 12 N -0.598 5.598 13 C 0.096 3.904 14 C -0.121 4.121 15 C -0.109 4.109 16 H 0.088 0.912 17 C 0.145 3.855 18 N -0.601 5.601 19 C -0.233 4.233 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.166 3.834 28 C 0.114 3.886 29 H 0.083 0.917 30 C 0.114 3.886 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.024 0.976 42 H 0.027 0.973 43 H 0.254 0.746 44 H 0.020 0.980 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.644 14.195 -10.938 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.167 5.167 3 C -0.026 4.026 4 N -0.198 5.198 5 C -0.135 4.135 6 C 0.021 3.979 7 N -0.194 5.194 8 C -0.018 4.018 9 C -0.165 4.165 10 C 0.362 3.638 11 O -0.397 6.397 12 N -0.332 5.332 13 C -0.027 4.027 14 C -0.159 4.159 15 C -0.129 4.129 16 H 0.106 0.894 17 C 0.018 3.982 18 N -0.328 5.328 19 C -0.362 4.362 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.563 5.563 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.040 3.960 28 C 0.011 3.989 29 H 0.101 0.899 30 C -0.005 4.005 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.186 0.814 36 H 0.186 0.814 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.387 14.286 -10.181 19.444 hybrid contribution -1.852 -0.572 0.615 2.034 sum 6.534 13.714 -9.566 17.952 Atomic orbital electron populations 1.22241 0.74609 1.04939 1.04696 1.45198 1.08262 1.05007 1.58216 1.25555 0.84986 0.93507 0.98515 1.70468 1.18264 1.09966 1.21099 1.20115 0.92758 0.91512 1.09133 1.22265 0.98086 0.86278 0.91291 1.67714 1.23179 1.13795 1.14706 1.22765 0.85647 1.00013 0.93331 1.19902 0.95939 0.90129 1.10503 1.17519 0.86310 0.79042 0.80971 1.90848 1.52279 1.59932 1.36609 1.48484 1.17969 1.41081 1.25629 1.22450 0.95485 0.96281 0.88441 1.22800 0.95175 0.96090 1.01858 1.22877 0.95809 0.97133 0.97039 0.89410 1.20992 0.97103 0.93205 0.86857 1.44135 1.70066 1.19449 0.99107 1.18981 1.32184 0.96986 0.88004 0.90362 1.24835 1.00906 0.97959 0.96532 1.69892 1.49745 1.27426 1.09195 0.86184 0.78877 0.81062 0.79524 1.21144 1.21570 1.21107 1.21659 0.98070 0.83848 0.92416 1.23010 0.84309 0.93372 0.98216 0.89877 1.18669 0.91674 0.88509 1.01650 0.89561 0.89523 0.88971 0.76379 0.81443 0.81353 0.90629 0.91823 0.89658 0.90139 0.95825 0.95541 0.93549 0.96229 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.08 59.85 0.60 1.38 16 2 N -0.48 -5.67 3.18 -122.86 -0.39 -6.06 16 3 C 0.26 2.55 12.51 -89.55 -1.12 1.43 16 4 N -0.48 -5.99 11.28 -12.00 -0.14 -6.12 16 5 C -0.01 -0.20 7.27 -84.73 -0.62 -0.81 16 6 C 0.19 2.33 11.25 -17.12 -0.19 2.14 16 7 N -0.48 -6.63 10.30 -12.65 -0.13 -6.76 16 8 C 0.13 1.91 9.15 -17.08 -0.16 1.75 16 9 C -0.16 -2.41 5.20 -104.86 -0.55 -2.95 16 10 C 0.57 10.13 5.84 -12.47 -0.07 10.05 16 11 O -0.52 -10.88 15.25 5.29 0.08 -10.80 16 12 N -0.60 -9.83 2.88 -162.88 -0.47 -10.30 16 13 C 0.10 1.23 6.64 -2.55 -0.02 1.21 16 14 C -0.12 -1.60 6.24 -24.76 -0.15 -1.75 16 15 C -0.11 -1.71 3.91 -88.34 -0.35 -2.06 16 16 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 17 C 0.14 2.83 6.65 -3.86 -0.03 2.80 16 18 N -0.60 -15.07 3.37 -172.22 -0.58 -15.65 16 19 C -0.23 -6.45 10.25 -15.06 -0.15 -6.61 16 20 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 21 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 22 N -0.92 -27.36 10.17 55.49 0.56 -26.80 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.17 4.05 4.94 -3.38 -0.02 4.03 16 28 C 0.11 2.14 3.83 -65.74 -0.25 1.89 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 30 C 0.11 1.65 6.82 -83.81 -0.57 1.08 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.17 5.67 -51.93 -0.29 0.87 16 34 H 0.22 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.17 2.29 7.27 -52.49 -0.38 1.91 16 37 H 0.08 0.89 5.37 -51.93 -0.28 0.61 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.31 7.88 -51.93 -0.41 0.90 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.02 0.53 7.96 -51.93 -0.41 0.12 16 45 H 0.10 2.77 6.22 -51.93 -0.32 2.45 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -35.13 360.75 -10.24 -45.37 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.85 Total: 1.18 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -3.73 Total: 13.33 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.14 Total: -71.69 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.13 -10.24 -45.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075904014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.450 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds