Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35991 * 126.35335 * 2 1 4 4 N 1.30278 * 110.05537 * 179.73875 * 3 2 1 5 5 C 1.34655 * 109.67033 * 0.02562 * 4 3 2 6 6 C 1.37938 * 126.36110 * 179.69433 * 2 1 3 7 7 N 1.32119 * 133.80458 * 0.19471 * 6 2 1 8 8 C 1.31724 * 121.94201 * 180.02562 * 7 6 2 9 9 C 1.38334 * 121.55335 * 0.04052 * 8 7 6 10 10 C 1.39634 * 119.37531 * 359.97438 * 9 8 7 11 11 C 1.47762 * 121.07760 * 179.97438 * 10 9 8 12 12 O 1.21554 * 120.00336 * 171.74854 * 11 10 9 13 13 N 1.34781 * 119.99859 * 351.74619 * 11 10 9 14 14 C 1.47398 * 125.59235 * 184.35446 * 13 11 10 15 15 C 1.54856 * 104.81003 * 204.61015 * 14 13 11 16 16 C 1.55124 * 101.77500 * 322.81179 * 15 14 13 17 17 H 1.09006 * 113.45651 * 159.24762 * 16 15 14 18 18 C 1.54044 * 108.25634 * 286.08922 * 16 15 14 19 19 N 1.46713 * 106.82386 * 135.80888 * 18 16 15 20 20 C 1.36930 * 125.32004 * 161.82017 * 19 18 16 21 21 H 1.08001 * 120.00280 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99929 * 180.02562 * 20 19 18 23 23 N 1.31609 * 119.99747 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00018 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47165 * 59.99770 * 24 22 20 26 26 H 1.48491 * 109.47406 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.47328 * 299.99902 * 24 22 20 28 28 C 1.46628 * 109.35678 * 341.82215 * 19 18 16 29 29 C 1.46736 * 125.58489 * 4.04730 * 13 11 10 30 30 H 1.08997 * 111.33238 * 56.12796 * 29 13 11 31 31 H 1.09001 * 109.47242 * 90.02207 * 1 2 3 32 32 H 1.08996 * 109.46769 * 210.02091 * 1 2 3 33 33 H 1.08998 * 109.46897 * 330.01991 * 1 2 3 34 34 H 1.08003 * 124.97176 * 359.72000 * 3 2 1 35 35 H 1.08001 * 119.22312 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.31418 * 180.02562 * 9 8 7 37 37 H 1.09004 * 110.36810 * 323.44059 * 14 13 11 38 38 H 1.08999 * 110.37337 * 85.77005 * 14 13 11 39 39 H 1.09001 * 110.96967 * 80.93654 * 15 14 13 40 40 H 1.09004 * 110.96192 * 204.65458 * 15 14 13 41 41 H 1.08994 * 109.99064 * 255.15005 * 18 16 15 42 42 H 1.08997 * 109.99346 * 16.47328 * 18 16 15 43 43 H 0.96998 * 119.99973 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.75790 * 120.92469 * 28 19 18 45 45 H 1.08999 * 109.75869 * 241.62923 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0952 0.0000 4 7 3.5216 0.7296 0.0056 5 6 3.6008 -0.6146 0.0089 6 6 2.2828 -1.1108 0.0059 7 7 2.0572 -2.4126 0.0096 8 6 3.0395 -3.2901 0.0157 9 6 4.3647 -2.8933 0.0194 10 6 4.6718 -1.5311 0.0161 11 6 6.0741 -1.0654 0.0204 12 8 6.3232 0.1144 -0.1336 13 7 7.0770 -1.9487 0.1952 14 6 8.5071 -1.6110 0.3110 15 6 9.2537 -2.8921 -0.1355 16 6 8.3475 -4.0068 0.4496 17 1 8.4805 -4.9736 -0.0361 18 6 8.5620 -4.0526 1.9743 19 7 7.2338 -4.1671 2.5868 20 6 6.9858 -4.5842 3.8672 21 1 7.8056 -4.8616 4.5132 22 6 5.6804 -4.6517 4.3346 23 7 4.6813 -4.3142 3.5472 24 14 5.3420 -5.2201 6.0816 25 1 6.0192 -4.3086 7.0386 26 1 3.8787 -5.2027 6.3331 27 1 5.8594 -6.6004 6.2621 28 6 6.2135 -3.7650 1.6135 29 6 6.9235 -3.4036 0.3078 30 1 6.4031 -3.8155 -0.5569 31 1 -0.3634 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5141 33 1 -0.3633 0.8902 0.5135 34 1 1.9253 2.1184 -0.0043 35 1 2.8048 -4.3443 0.0181 36 1 5.1543 -3.6300 0.0240 37 1 8.7549 -0.7784 -0.3474 38 1 8.7569 -1.3665 1.3435 39 1 9.3002 -2.9576 -1.2226 40 1 10.2527 -2.9326 0.2988 41 1 9.1703 -4.9173 2.2392 42 1 9.0492 -3.1370 2.3097 43 1 3.7692 -4.3609 3.8739 44 1 5.5217 -4.5898 1.4429 45 1 5.6685 -2.8984 1.9877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076230382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = 138.848323 kcal Electronic energy + Delta-G solvation = -31050.380066 eV Core-core repulsion = 27071.781388 eV Total energy + Delta-G solvation = -3978.598678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19967 -40.49053 -38.10945 -37.62363 -34.70175 -34.28162 -32.97821 -31.77595 -30.46702 -29.61552 -28.77243 -27.12069 -26.64555 -24.86369 -24.43371 -22.73254 -22.64203 -21.18235 -20.61086 -19.80428 -18.73059 -18.12525 -17.18728 -16.85525 -16.48120 -15.99245 -15.59438 -15.34207 -14.86324 -14.43916 -14.25192 -14.12215 -13.84147 -13.66031 -13.50130 -13.17394 -12.85556 -12.82156 -12.64151 -12.28200 -12.21937 -12.10541 -11.86750 -11.39740 -11.12040 -11.01918 -10.74233 -10.65121 -10.52952 -10.46440 -10.25629 -10.11576 -9.91598 -9.74919 -9.66377 -8.79242 -8.66957 -8.41317 -8.26217 -8.11291 -6.87881 -5.75557 -3.08972 0.72504 1.51218 2.43927 2.95182 3.25232 3.38658 3.41401 3.43766 3.44431 4.23176 4.27199 4.43416 4.46035 4.58152 4.72184 4.73409 4.98771 5.04845 5.12844 5.15791 5.20956 5.33385 5.36039 5.44911 5.50971 5.56991 5.67893 5.77034 5.83118 5.93029 6.02113 6.07950 6.14290 6.20577 6.27608 6.30915 6.35493 6.59808 6.64851 6.82471 6.85582 7.05514 7.25996 7.47101 7.71137 7.92842 7.98494 8.10116 8.20431 8.60507 9.17211 9.78236 10.40744 11.35391 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.005136 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.186717 B = 5450.924811 C = 7422.334151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.489 5.489 3 C 0.259 3.741 4 N -0.465 5.465 5 C 0.051 3.949 6 C 0.227 3.773 7 N -0.471 5.471 8 C 0.145 3.855 9 C -0.152 4.152 10 C -0.035 4.035 11 C 0.576 3.424 12 O -0.520 6.520 13 N -0.598 5.598 14 C 0.111 3.889 15 C -0.125 4.125 16 C -0.109 4.109 17 H 0.101 0.899 18 C 0.140 3.860 19 N -0.600 5.600 20 C -0.231 4.231 21 H 0.078 0.922 22 C -0.003 4.003 23 N -0.918 5.918 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.165 3.835 29 C 0.089 3.911 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.219 0.781 35 H 0.170 0.830 36 H 0.185 0.815 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.021 0.979 43 H 0.253 0.747 44 H 0.061 0.939 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 3.849 -11.237 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.183 5.183 3 C -0.026 4.026 4 N -0.183 5.183 5 C -0.072 4.072 6 C -0.008 4.008 7 N -0.184 5.184 8 C -0.021 4.021 9 C -0.174 4.174 10 C -0.048 4.048 11 C 0.365 3.635 12 O -0.396 6.396 13 N -0.332 5.332 14 C -0.012 4.012 15 C -0.163 4.163 16 C -0.128 4.128 17 H 0.120 0.880 18 C 0.014 3.986 19 N -0.327 5.327 20 C -0.359 4.359 21 H 0.096 0.904 22 C -0.200 4.200 23 N -0.565 5.565 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.211 1.211 28 C 0.040 3.960 29 C -0.015 4.015 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.235 0.765 35 H 0.187 0.813 36 H 0.201 0.799 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.816 4.843 -11.183 12.770 hybrid contribution -0.359 -0.494 1.231 1.374 sum -4.175 4.349 -9.952 11.636 Atomic orbital electron populations 1.21944 0.75721 1.04711 1.03286 1.44990 1.07391 1.04674 1.61197 1.25544 0.85030 0.93048 0.98976 1.70275 1.17360 1.10974 1.19668 1.19109 0.92088 0.91005 1.04970 1.18857 0.88702 0.88099 1.05118 1.66131 1.38432 0.99330 1.14558 1.22476 0.87207 0.98216 0.94243 1.23730 1.00434 0.96001 0.97217 1.19415 0.91841 0.92116 1.01432 1.17575 0.83787 0.84933 0.77187 1.90784 1.83991 1.15786 1.49056 1.48211 1.06662 1.06924 1.71407 1.22194 0.79787 0.97634 1.01552 1.22784 0.98786 0.94092 1.00643 1.23158 0.93236 0.98126 0.98308 0.88039 1.21359 0.89701 0.98373 0.89207 1.44169 0.99545 1.78025 1.10914 1.18969 0.92309 1.37549 0.87117 0.90423 1.24757 0.95565 1.01445 0.98239 1.69876 0.98342 1.53533 1.34743 0.86216 0.76935 0.78464 0.84223 1.21296 1.21669 1.21118 1.21667 0.90286 0.99966 0.84122 1.22963 0.97996 0.80057 1.00520 0.89225 0.90915 0.89346 0.89533 0.76481 0.81284 0.79917 0.90679 0.91165 0.90961 0.89806 0.94454 0.96132 0.93666 0.92122 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.20 59.85 0.67 1.41 16 2 N -0.49 -6.77 3.20 -124.98 -0.40 -7.17 16 3 C 0.26 3.55 12.50 -89.69 -1.12 2.43 16 4 N -0.47 -8.90 10.66 -11.88 -0.13 -9.03 16 5 C 0.05 1.04 6.85 -84.62 -0.58 0.46 16 6 C 0.23 4.08 8.02 -155.64 -1.25 2.84 16 7 N -0.47 -8.34 10.35 -12.30 -0.13 -8.47 16 8 C 0.14 2.44 11.14 -17.56 -0.20 2.24 16 9 C -0.15 -2.74 6.97 -39.02 -0.27 -3.01 16 10 C -0.04 -0.71 5.45 -104.45 -0.57 -1.28 16 11 C 0.58 12.20 7.52 -12.36 -0.09 12.11 16 12 O -0.52 -12.27 16.45 5.32 0.09 -12.18 16 13 N -0.60 -11.13 2.99 -163.98 -0.49 -11.62 16 14 C 0.11 1.78 6.45 -2.57 -0.02 1.77 16 15 C -0.12 -1.59 6.35 -24.63 -0.16 -1.75 16 16 C -0.11 -1.65 4.35 -87.73 -0.38 -2.03 16 17 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.14 2.67 6.45 -3.38 -0.02 2.65 16 19 N -0.60 -14.44 3.38 -172.35 -0.58 -15.02 16 20 C -0.23 -6.20 10.25 -15.06 -0.15 -6.35 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 22 C 0.00 -0.09 5.48 -17.43 -0.10 -0.19 16 23 N -0.92 -25.52 10.24 55.49 0.57 -24.95 16 24 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.16 3.65 3.02 -3.99 -0.01 3.64 16 29 C 0.09 1.54 2.70 -66.61 -0.18 1.36 16 30 H 0.09 1.34 6.28 -51.93 -0.33 1.02 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.22 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.17 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.18 3.13 1.94 -52.66 -0.10 3.03 16 37 H 0.07 1.16 7.98 -51.93 -0.41 0.75 16 38 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.02 0.41 6.52 -51.93 -0.34 0.07 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.06 1.42 6.48 -51.93 -0.34 1.09 16 45 H 0.06 1.49 5.74 -51.93 -0.30 1.19 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -36.64 354.17 -10.72 -47.36 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.54 Total: 2.70 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: -4.43 Total: 16.28 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.16 Total: -76.26 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.64 -10.72 -47.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076230382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.211 kcal (2) G-P(sol) polarization free energy of solvation -36.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds