Wall clock time and date at job start Sat Apr 11 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35991 * 126.35335 * 2 1 4 4 N 1.30278 * 110.05537 * 179.73875 * 3 2 1 5 5 C 1.34655 * 109.67033 * 0.02562 * 4 3 2 6 6 C 1.37938 * 126.36110 * 179.69433 * 2 1 3 7 7 N 1.32119 * 133.80458 * 0.19471 * 6 2 1 8 8 C 1.31724 * 121.94201 * 180.02562 * 7 6 2 9 9 C 1.38334 * 121.55335 * 0.04052 * 8 7 6 10 10 C 1.39634 * 119.37531 * 359.97438 * 9 8 7 11 11 C 1.47762 * 121.07760 * 179.97438 * 10 9 8 12 12 O 1.21554 * 120.00336 * 171.74854 * 11 10 9 13 13 N 1.34781 * 119.99859 * 351.74619 * 11 10 9 14 14 C 1.47398 * 125.59235 * 184.35446 * 13 11 10 15 15 C 1.54856 * 104.81003 * 204.61015 * 14 13 11 16 16 C 1.55124 * 101.77500 * 322.81179 * 15 14 13 17 17 H 1.09006 * 113.45651 * 159.24762 * 16 15 14 18 18 C 1.54044 * 108.25634 * 286.08922 * 16 15 14 19 19 N 1.46713 * 106.82386 * 135.80888 * 18 16 15 20 20 C 1.36930 * 125.32004 * 161.82017 * 19 18 16 21 21 H 1.08001 * 120.00280 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99929 * 180.02562 * 20 19 18 23 23 N 1.31609 * 119.99747 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00018 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47165 * 59.99770 * 24 22 20 26 26 H 1.48491 * 109.47406 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.47328 * 299.99902 * 24 22 20 28 28 C 1.46628 * 109.35678 * 341.82215 * 19 18 16 29 29 C 1.46736 * 125.58489 * 4.04730 * 13 11 10 30 30 H 1.08997 * 111.33238 * 56.12796 * 29 13 11 31 31 H 1.09001 * 109.47242 * 90.02207 * 1 2 3 32 32 H 1.08996 * 109.46769 * 210.02091 * 1 2 3 33 33 H 1.08998 * 109.46897 * 330.01991 * 1 2 3 34 34 H 1.08003 * 124.97176 * 359.72000 * 3 2 1 35 35 H 1.08001 * 119.22312 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.31418 * 180.02562 * 9 8 7 37 37 H 1.09004 * 110.36810 * 323.44059 * 14 13 11 38 38 H 1.08999 * 110.37337 * 85.77005 * 14 13 11 39 39 H 1.09001 * 110.96967 * 80.93654 * 15 14 13 40 40 H 1.09004 * 110.96192 * 204.65458 * 15 14 13 41 41 H 1.08994 * 109.99064 * 255.15005 * 18 16 15 42 42 H 1.08997 * 109.99346 * 16.47328 * 18 16 15 43 43 H 0.96998 * 119.99973 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.75790 * 120.92469 * 28 19 18 45 45 H 1.08999 * 109.75869 * 241.62923 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0952 0.0000 4 7 3.5216 0.7296 0.0056 5 6 3.6008 -0.6146 0.0089 6 6 2.2828 -1.1108 0.0059 7 7 2.0572 -2.4126 0.0096 8 6 3.0395 -3.2901 0.0157 9 6 4.3647 -2.8933 0.0194 10 6 4.6718 -1.5311 0.0161 11 6 6.0741 -1.0654 0.0204 12 8 6.3232 0.1144 -0.1336 13 7 7.0770 -1.9487 0.1952 14 6 8.5071 -1.6110 0.3110 15 6 9.2537 -2.8921 -0.1355 16 6 8.3475 -4.0068 0.4496 17 1 8.4805 -4.9736 -0.0361 18 6 8.5620 -4.0526 1.9743 19 7 7.2338 -4.1671 2.5868 20 6 6.9858 -4.5842 3.8672 21 1 7.8056 -4.8616 4.5132 22 6 5.6804 -4.6517 4.3346 23 7 4.6813 -4.3142 3.5472 24 14 5.3420 -5.2201 6.0816 25 1 6.0192 -4.3086 7.0386 26 1 3.8787 -5.2027 6.3331 27 1 5.8594 -6.6004 6.2621 28 6 6.2135 -3.7650 1.6135 29 6 6.9235 -3.4036 0.3078 30 1 6.4031 -3.8155 -0.5569 31 1 -0.3634 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5141 33 1 -0.3633 0.8902 0.5135 34 1 1.9253 2.1184 -0.0043 35 1 2.8048 -4.3443 0.0181 36 1 5.1543 -3.6300 0.0240 37 1 8.7549 -0.7784 -0.3474 38 1 8.7569 -1.3665 1.3435 39 1 9.3002 -2.9576 -1.2226 40 1 10.2527 -2.9326 0.2988 41 1 9.1703 -4.9173 2.2392 42 1 9.0492 -3.1370 2.3097 43 1 3.7692 -4.3609 3.8739 44 1 5.5217 -4.5898 1.4429 45 1 5.6685 -2.8984 1.9877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076230382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:55 Heat of formation + Delta-G solvation = 114.868778 kcal Electronic energy + Delta-G solvation = -31051.419897 eV Core-core repulsion = 27071.781388 eV Total energy + Delta-G solvation = -3979.638509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.44502 -41.92539 -39.50895 -39.10609 -36.39734 -35.49111 -34.34230 -33.55261 -31.87269 -31.03105 -30.30446 -28.30121 -27.91046 -26.60974 -25.85379 -24.03803 -23.96059 -22.74644 -22.05669 -21.13788 -20.14068 -19.47143 -18.65751 -18.44605 -17.76799 -17.20852 -17.03597 -16.80577 -16.60720 -15.93052 -15.71411 -15.55666 -15.26516 -14.88841 -14.78397 -14.44354 -14.28815 -14.13623 -14.02498 -13.68013 -13.43887 -13.39672 -13.32984 -12.98640 -12.79864 -12.67259 -12.38359 -12.18865 -11.94715 -11.87129 -11.83279 -11.55974 -11.50395 -11.33923 -11.21564 -10.67398 -10.16497 -9.81002 -9.60679 -9.49538 -8.81783 -7.80188 -5.14075 -0.63222 0.17570 1.37329 1.45957 1.47807 1.53379 1.64271 1.84291 1.98680 2.50869 2.84737 3.02810 3.30908 3.37599 3.39027 3.43467 3.65415 3.71453 3.81691 3.94603 4.01495 4.09823 4.16051 4.27648 4.30295 4.43918 4.47140 4.55075 4.58506 4.70283 4.75515 4.82196 4.87149 4.89006 4.94210 5.08226 5.15413 5.18452 5.32305 5.43690 5.46290 5.55381 5.56916 5.75844 5.99977 6.23914 6.42296 6.75882 6.77919 7.05329 7.15564 7.84076 8.44746 9.27230 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.005136 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.186717 B = 5450.924811 C = 7422.334151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.483 5.483 3 C 0.286 3.714 4 N -0.526 5.526 5 C 0.023 3.977 6 C 0.208 3.792 7 N -0.472 5.472 8 C 0.133 3.867 9 C -0.146 4.146 10 C -0.070 4.070 11 C 0.568 3.432 12 O -0.558 6.558 13 N -0.597 5.597 14 C 0.100 3.900 15 C -0.103 4.103 16 C -0.093 4.093 17 H 0.138 0.862 18 C 0.132 3.868 19 N -0.623 5.623 20 C -0.243 4.243 21 H 0.079 0.921 22 C -0.056 4.056 23 N -0.934 5.934 24 Si 0.967 3.033 25 H -0.289 1.289 26 H -0.298 1.298 27 H -0.272 1.272 28 C 0.182 3.818 29 C 0.091 3.909 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.276 0.724 35 H 0.196 0.804 36 H 0.189 0.811 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.048 0.952 42 H 0.015 0.985 43 H 0.243 0.757 44 H 0.044 0.956 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 3.419 -12.418 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.176 5.176 3 C 0.001 3.999 4 N -0.245 5.245 5 C -0.100 4.100 6 C -0.028 4.028 7 N -0.185 5.185 8 C -0.033 4.033 9 C -0.167 4.167 10 C -0.083 4.083 11 C 0.358 3.642 12 O -0.438 6.438 13 N -0.329 5.329 14 C -0.022 4.022 15 C -0.141 4.141 16 C -0.113 4.113 17 H 0.156 0.844 18 C 0.007 3.993 19 N -0.350 5.350 20 C -0.372 4.372 21 H 0.097 0.903 22 C -0.250 4.250 23 N -0.582 5.582 24 Si 0.797 3.203 25 H -0.216 1.216 26 H -0.225 1.225 27 H -0.198 1.198 28 C 0.056 3.944 29 C -0.012 4.012 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.292 0.708 35 H 0.213 0.787 36 H 0.205 0.795 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.032 0.968 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -3.822 4.381 -12.373 13.671 hybrid contribution -0.404 -0.255 1.663 1.730 sum -4.226 4.126 -10.711 12.231 Atomic orbital electron populations 1.22347 0.72439 1.06206 1.05154 1.45388 1.09166 1.03247 1.59755 1.26666 0.83647 0.94874 0.94695 1.70222 1.20527 1.10762 1.23013 1.19482 0.93117 0.91919 1.05509 1.19196 0.89099 0.88911 1.05584 1.66216 1.38474 0.99442 1.14371 1.22932 0.86852 0.99400 0.94101 1.23767 1.01095 0.95221 0.96660 1.19611 0.91732 0.93307 1.03648 1.17882 0.84711 0.84817 0.76790 1.90728 1.84650 1.17193 1.51197 1.48313 1.07291 1.07212 1.70107 1.22412 0.78977 1.00107 1.00660 1.22787 0.98710 0.90170 1.02465 1.23219 0.91860 1.00501 0.95684 0.84440 1.21592 0.87569 0.98338 0.91848 1.44493 1.02046 1.77728 1.10705 1.19296 0.92397 1.36778 0.88694 0.90292 1.25461 0.95719 1.02429 1.01400 1.70093 0.97906 1.54570 1.35671 0.85325 0.76029 0.78444 0.80528 1.21551 1.22483 1.19806 1.21313 0.89995 0.97253 0.85827 1.22959 0.99614 0.79663 0.98984 0.86220 0.88825 0.90359 0.85563 0.70848 0.78685 0.79466 0.90233 0.93285 0.87889 0.87235 0.93336 0.96763 0.94746 0.93843 0.97272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 11.20 127.77 1.43 2.57 16 2 N -0.48 -12.73 3.20 -549.32 -1.76 -14.49 16 3 C 0.29 7.41 12.50 180.02 2.25 9.66 16 4 N -0.53 -20.59 10.66 -191.50 -2.04 -22.63 16 5 C 0.02 0.96 6.85 40.01 0.27 1.24 16 6 C 0.21 7.59 8.02 133.92 1.07 8.66 16 7 N -0.47 -16.96 10.35 -192.84 -2.00 -18.95 16 8 C 0.13 4.60 11.14 84.73 0.94 5.54 16 9 C -0.15 -5.45 6.97 22.63 0.16 -5.29 16 10 C -0.07 -2.99 5.45 -19.75 -0.11 -3.10 16 11 C 0.57 25.20 7.52 86.76 0.65 25.85 16 12 O -0.56 -27.75 16.45 -3.89 -0.06 -27.81 16 13 N -0.60 -22.48 2.99 -790.98 -2.37 -24.85 16 14 C 0.10 3.17 6.45 86.84 0.56 3.73 16 15 C -0.10 -2.27 6.35 31.96 0.20 -2.07 16 16 C -0.09 -2.57 4.35 -8.92 -0.04 -2.60 16 17 H 0.14 2.92 8.14 -2.38 -0.02 2.90 16 18 C 0.13 4.85 6.45 86.69 0.56 5.41 16 19 N -0.62 -30.24 3.38 -699.20 -2.36 -32.61 16 20 C -0.24 -13.17 10.25 84.04 0.86 -12.31 16 21 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 22 C -0.06 -3.10 5.48 84.87 0.47 -2.64 16 23 N -0.93 -53.62 10.24 21.65 0.22 -53.40 16 24 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 28 C 0.18 8.22 3.02 86.34 0.26 8.48 16 29 C 0.09 3.10 2.70 45.72 0.12 3.23 16 30 H 0.12 3.39 6.28 -2.39 -0.02 3.38 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.28 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.20 5.42 8.06 -2.91 -0.02 5.40 16 36 H 0.19 6.55 1.94 -3.08 -0.01 6.55 16 37 H 0.08 2.44 7.98 -2.39 -0.02 2.42 16 38 H 0.05 1.74 7.18 -2.39 -0.02 1.73 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.11 1.94 8.08 -2.38 -0.02 1.92 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.01 0.56 6.52 -2.39 -0.02 0.54 16 43 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.04 2.10 6.48 -2.39 -0.02 2.08 16 45 H 0.01 0.51 5.74 -2.39 -0.01 0.49 16 Total: -1.00 -86.54 354.17 2.37 -84.17 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.04 Total: 16.67 kcal Atomic # 6 Polarization: 36.69 SS G_CDS: 9.67 Total: 46.36 kcal Atomic # 7 Polarization: -156.63 SS G_CDS: -10.30 Total: -166.93 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.06 Total: -27.81 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -86.54 2.37 -84.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076230382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.040 kcal (2) G-P(sol) polarization free energy of solvation -86.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds