Wall clock time and date at job start Sat Apr 11 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35997 * 126.29336 * 2 1 4 4 N 1.30213 * 110.17729 * 179.97438 * 3 2 1 5 5 C 1.35433 * 109.58034 * 359.97438 * 4 3 2 6 6 C 1.39898 * 133.81279 * 179.97438 * 5 4 3 7 7 C 1.36992 * 118.35721 * 179.97438 * 6 5 4 8 8 C 1.39725 * 119.59967 * 0.26256 * 7 6 5 9 9 C 1.47978 * 119.42481 * 179.74303 * 8 7 6 10 10 O 1.21536 * 120.00028 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99925 * 179.97438 * 9 8 7 12 12 C 1.47400 * 125.58639 * 0.02562 * 11 9 8 13 13 C 1.54857 * 104.81169 * 204.60646 * 12 11 9 14 14 C 1.55126 * 101.77857 * 322.82068 * 13 12 11 15 15 H 1.08989 * 113.46472 * 158.33447 * 14 13 12 16 16 C 1.54043 * 108.25396 * 285.18242 * 14 13 12 17 17 N 1.46704 * 106.82851 * 135.80657 * 16 14 13 18 18 C 1.36940 * 125.32429 * 161.84451 * 17 16 14 19 19 H 1.07997 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00280 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47026 * 59.99703 * 22 20 18 24 24 H 1.48501 * 109.47208 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46862 * 299.99815 * 22 20 18 26 26 C 1.46632 * 109.35572 * 341.81490 * 17 16 14 27 27 C 1.46727 * 125.59182 * 179.71878 * 11 9 8 28 28 H 1.09006 * 111.32891 * 56.12716 * 27 11 9 29 29 N 1.32656 * 121.14473 * 359.44517 * 8 7 6 30 30 C 1.31881 * 121.36501 * 0.58201 * 29 8 7 31 31 H 1.08993 * 109.47160 * 270.02915 * 1 2 3 32 32 H 1.09006 * 109.46608 * 30.02721 * 1 2 3 33 33 H 1.08996 * 109.47161 * 150.02644 * 1 2 3 34 34 H 1.07999 * 124.90765 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.81959 * 0.02773 * 6 5 4 36 36 H 1.08002 * 120.19519 * 179.97438 * 7 6 5 37 37 H 1.09001 * 110.37511 * 323.44305 * 12 11 9 38 38 H 1.09005 * 110.37308 * 85.77769 * 12 11 9 39 39 H 1.09007 * 110.96724 * 80.93959 * 13 12 11 40 40 H 1.08999 * 110.96784 * 204.69569 * 13 12 11 41 41 H 1.08996 * 109.98998 * 255.14692 * 16 14 13 42 42 H 1.09004 * 109.99102 * 16.46368 * 16 14 13 43 43 H 0.96993 * 120.00050 * 179.97438 * 21 20 18 44 44 H 1.09009 * 109.75539 * 120.92914 * 26 17 16 45 45 H 1.09001 * 109.76411 * 241.62814 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2701 1.0961 0.0000 4 7 3.5210 0.7347 0.0005 5 6 3.6029 -0.6172 0.0015 6 6 4.6690 -1.5229 0.0019 7 6 4.3844 -2.8629 0.0035 8 6 3.0526 -3.2856 -0.0010 9 6 2.7496 -4.7341 -0.0050 10 8 3.6554 -5.5444 -0.0049 11 7 1.4692 -5.1546 -0.0088 12 6 0.2802 -4.2835 -0.0099 13 6 -0.8451 -5.1487 0.6092 14 6 -0.5221 -6.5506 0.0291 15 1 -0.9467 -7.3691 0.6102 16 6 -0.9429 -6.5685 -1.4526 17 7 0.1441 -7.2159 -2.1951 18 6 0.0375 -7.7460 -3.4533 19 1 -0.9056 -7.7061 -3.9779 20 6 1.1417 -8.3347 -4.0542 21 7 2.2913 -8.3829 -3.4150 22 14 0.9962 -9.0584 -5.7702 23 1 0.5937 -7.9938 -6.7239 24 1 2.3064 -9.6232 -6.1820 25 1 -0.0275 -10.1343 -5.7684 26 6 1.3628 -7.2061 -1.3798 27 6 1.0302 -6.5547 -0.0189 28 1 1.4510 -7.1082 0.8205 29 7 2.0552 -2.4111 0.0043 30 6 2.2815 -1.1118 0.0025 31 1 -0.3633 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3633 -0.8902 -0.5134 34 1 1.9220 2.1185 -0.0004 35 1 5.6912 -1.1743 0.0019 36 1 5.1847 -3.5882 0.0035 37 1 0.4577 -3.3983 0.6008 38 1 0.0209 -3.9965 -1.0291 39 1 -0.7804 -5.1524 1.6973 40 1 -1.8262 -4.8067 0.2795 41 1 -1.8653 -7.1370 -1.5711 42 1 -1.0843 -5.5492 -1.8121 43 1 3.0627 -8.7946 -3.8348 44 1 1.7035 -8.2282 -1.2140 45 1 2.1411 -6.6362 -1.8872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076237876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:59 Heat of formation + Delta-G solvation = 114.046179 kcal Electronic energy + Delta-G solvation = -30319.523640 eV Core-core repulsion = 26339.849460 eV Total energy + Delta-G solvation = -3979.674180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.56531 -40.25181 -38.68353 -37.27287 -34.94458 -34.59990 -32.41285 -31.80955 -30.78474 -30.16350 -28.58791 -27.44947 -26.41174 -24.88973 -24.63137 -23.33780 -22.27531 -21.19396 -20.73657 -19.80449 -18.96545 -18.00315 -17.63589 -16.94987 -16.60429 -16.39763 -15.96753 -15.11151 -14.90138 -14.81673 -14.43498 -14.23520 -13.76950 -13.69122 -13.53235 -13.36909 -13.08094 -13.03664 -12.72285 -12.55697 -12.35902 -12.03886 -11.77437 -11.47849 -11.32076 -11.03343 -10.97639 -10.87970 -10.66026 -10.44702 -10.19828 -10.13689 -9.83623 -9.76706 -9.63778 -9.11767 -8.93194 -8.69402 -8.53875 -8.07042 -6.75919 -5.62524 -2.98540 0.35072 1.11088 2.03056 2.36437 3.08966 3.27012 3.44238 3.47947 3.50499 3.78640 3.91372 3.99086 4.28765 4.50689 4.54444 4.75194 4.79327 4.82000 4.93037 4.98351 5.07793 5.18061 5.27866 5.41072 5.54567 5.60878 5.67729 5.77870 5.81656 5.91620 5.92929 5.97055 6.07036 6.12020 6.35009 6.36363 6.40272 6.54171 6.59600 6.65658 6.70586 6.92999 7.42979 7.50946 7.61489 7.70842 7.92722 7.99272 8.34636 8.53257 9.28881 9.89825 10.53693 11.47277 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.003403 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.842637 B = 8225.624056 C = 8671.754240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.484 5.484 3 C 0.276 3.724 4 N -0.492 5.492 5 C 0.017 3.983 6 C -0.027 4.027 7 C -0.124 4.124 8 C 0.135 3.865 9 C 0.581 3.419 10 O -0.520 6.520 11 N -0.580 5.580 12 C 0.107 3.893 13 C -0.129 4.129 14 C -0.111 4.111 15 H 0.096 0.904 16 C 0.144 3.856 17 N -0.602 5.602 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.911 3.089 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.179 3.821 27 C 0.111 3.889 28 H 0.082 0.918 29 N -0.446 5.446 30 C 0.231 3.769 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.222 0.778 35 H 0.148 0.852 36 H 0.159 0.841 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.017 0.983 43 H 0.254 0.746 44 H 0.052 0.948 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.547 19.326 11.639 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.177 5.177 3 C -0.010 4.010 4 N -0.211 5.211 5 C -0.104 4.104 6 C -0.055 4.055 7 C -0.148 4.148 8 C -0.014 4.014 9 C 0.367 3.633 10 O -0.396 6.396 11 N -0.312 5.312 12 C -0.016 4.016 13 C -0.168 4.168 14 C -0.130 4.130 15 H 0.114 0.886 16 C 0.017 3.983 17 N -0.329 5.329 18 C -0.363 4.363 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.053 3.947 27 C 0.008 3.992 28 H 0.100 0.900 29 N -0.162 5.162 30 C -0.005 4.005 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.238 0.762 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.165 19.047 11.479 22.625 hybrid contribution -0.136 -0.415 -1.051 1.138 sum -4.301 18.632 10.428 21.781 Atomic orbital electron populations 1.22076 0.75080 1.05245 1.03821 1.45027 1.07798 1.04436 1.60436 1.25460 0.84984 0.93107 0.97448 1.70415 1.18192 1.10655 1.21825 1.19834 0.93399 0.91361 1.05848 1.20442 0.98411 0.90642 0.95966 1.21597 0.97263 0.96073 0.99847 1.21073 0.89165 0.92828 0.98293 1.17239 0.82087 0.85815 0.78201 1.90840 1.44692 1.53668 1.50367 1.48177 1.04721 1.08204 1.70109 1.22595 0.83797 0.93812 1.01404 1.22853 0.98552 0.95502 0.99882 1.23151 0.94633 0.96926 0.98328 0.88554 1.21288 0.92524 0.95874 0.88593 1.44191 1.05630 1.67951 1.15125 1.18955 0.96240 1.31013 0.90060 0.90530 1.24832 0.95744 1.01070 0.98592 1.69973 1.00488 1.48817 1.36911 0.86224 0.76674 0.78899 0.84070 1.21281 1.21570 1.21166 1.21386 0.89128 0.98849 0.85294 1.22910 0.93776 0.81380 1.01125 0.89976 1.66608 1.36018 0.99406 1.14170 1.18997 0.89211 0.87925 1.04361 0.90451 0.89163 0.88897 0.76197 0.83444 0.82359 0.88623 0.91647 0.91342 0.90226 0.94806 0.96516 0.93583 0.92974 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.19 59.85 0.67 1.10 16 2 N -0.48 -4.55 3.20 -124.97 -0.40 -4.95 16 3 C 0.28 2.28 12.49 -89.74 -1.12 1.16 16 4 N -0.49 -5.91 11.27 -11.93 -0.13 -6.04 16 5 C 0.02 0.23 7.25 -84.57 -0.61 -0.39 16 6 C -0.03 -0.34 10.16 -39.41 -0.40 -0.74 16 7 C -0.12 -1.78 9.55 -39.48 -0.38 -2.15 16 8 C 0.14 2.23 6.72 -82.96 -0.56 1.67 16 9 C 0.58 11.39 7.41 -12.27 -0.09 11.30 16 10 O -0.52 -11.76 16.27 5.33 0.09 -11.67 16 11 N -0.58 -10.87 2.98 -162.86 -0.49 -11.36 16 12 C 0.11 1.62 5.49 -2.57 -0.01 1.61 16 13 C -0.13 -1.70 6.34 -24.63 -0.16 -1.86 16 14 C -0.11 -1.87 4.28 -87.73 -0.38 -2.25 16 15 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 16 C 0.14 2.94 6.46 -3.39 -0.02 2.92 16 17 N -0.60 -15.76 3.38 -171.39 -0.58 -16.34 16 18 C -0.23 -6.69 10.25 -15.06 -0.15 -6.85 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 21 N -0.92 -28.13 10.24 55.49 0.57 -27.56 16 22 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.18 4.62 4.94 -3.19 -0.02 4.60 16 27 C 0.11 2.24 3.66 -65.80 -0.24 2.00 16 28 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 29 N -0.45 -6.67 6.56 -8.82 -0.06 -6.72 16 30 C 0.23 3.09 8.01 -155.74 -1.25 1.84 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.22 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.16 2.13 7.61 -52.49 -0.40 1.74 16 37 H 0.10 1.32 5.82 -51.93 -0.30 1.02 16 38 H 0.07 1.09 7.24 -51.93 -0.38 0.72 16 39 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.02 0.35 6.59 -51.93 -0.34 0.01 16 43 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.05 1.50 7.33 -51.92 -0.38 1.12 16 45 H 0.05 1.61 6.80 -51.93 -0.35 1.26 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -37.29 363.15 -11.29 -48.57 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.92 Total: -0.79 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: -4.81 Total: 13.70 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -1.09 Total: -72.97 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.29 -11.29 -48.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076237876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.620 kcal (2) G-P(sol) polarization free energy of solvation -37.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds